mRNA_H-elongata_contig14343.2992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14343.2992.1
Unique NamemRNA_H-elongata_contig14343.2992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 9.110e-42
Identity = 156/414 (37.68%), Postives = 199/414 (48.07%), Query Frame = 1 
Query:    1 WHRKELVRLMEAAVATPDQWETVAFQVGGGRTPTACMRQFLNLAVEEVLGEQNEQGPATGRGATSEAWVSKIGTLPDGDSEGFAENPAQKGADGGAVKSIAPSLSLMRQDTPPQGGKAAAESTHVGVGSTSGKGGTESYSDIGEAVASAGTGFITGADVDVDKDSHRRECRTPLGQNAPALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSKCEITAALVDSGRGGSLLEA---SRIAESSMGPRNEDVIMLEATARE-------------PGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIG-----RLDEVERRISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQSMLSK 1179
            W R+ELV LMEAAVA P++W+ VA QV GGRTP  CM++FL+LAVE+V+ + NE+ PA                +P                                              +  G  S  GK       D G      G+          ++ + +++    LG   PAL+LASALVSSVHPEVL+AA SAAA AA+ V     A++  +       +G  G    A   + + ES   P  ED  +     ++             P V+      +      G+  R +   A    A +   G      L      +  A AARAAVLSVAGLQARGLAEQE+RRTEAL+ADLLEAR+QRLE KLHC DELDQVLE ER  LEHDRAEL+  QA+SML K
Sbjct:  745 WRREELVLLMEAAVANPNRWDAVARQVAGGRTPVECMQRFLSLAVEDVV-QGNEKLPAA---------------VPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSSAGAASGEGK-------DAGTIPDQGGS---------QNRPNQQQQRPDYLGPEVPALVLASALVSSVHPEVLKAAMSAAAEAADAVTAA--ATANHDRDRGFPPAGGSGGGFRAGVPAAVEESGSRPGEEDGDLEMPDVKDLAGPAPRSRPGEPPAVDTAPVAANGGGAGAGEDGRVAVGGAPGSRAARGCAGGSSSASLSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 1124
[Close]
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: D8LMT7_ECTSI (Phasmid Socket Absent family member (Psa-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.320e-26
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:  937 AAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQSMLSK 1179
            A AARAAVLSVAGLQARGLAEQE+RRTEAL+ADLLEAR+QRLE KLHC DELDQVLE ER  LEHDRAEL+  QA+SML K
Sbjct:  127 ATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 207
[Close]
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: T1H8S7_RHOPR (Uncharacterized protein n=5 Tax=Triatominae TaxID=70999 RepID=T1H8S7_RHOPR)

HSP 1 Score: 65.9 bits (159), Expect = 3.460e-7
Identity = 97/397 (24.43%), Postives = 161/397 (40.55%), Query Frame = 1 
Query:    1 WHRKELVRLMEAAVATPDQWETVAFQVGGGRTPTACMRQFLNLAVEEVLGEQNEQGPATGRGATSEAWVSKIGTLPDGDSEGFAENPAQKGADGGAVKSIAPSLSLMRQDTPPQGGKAAAESTHVGVGSTSGKGGTESYSDIGEAVASAGTGFITGADVDVDKDSHRRECRTPLGQNAPALMLASALVSSVHPEVLRAA-ASAAAVAAEDVARRWDASSKCEITAALVDSGRGGSLLEASRIAESSMGPRNEDVIMLEATAREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERRISRAA---AARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQSMLSK 1179
            W  +E + L+EA     D W  V   VG  RT   C+  FL L +E+   E +E G A G  A      SK G            NP            I  +++ +     P+   +AA++  V             +++I + V +A           +D      E  T  G+  P+  L  + ++   PE   +       V +E      D++ K E  AA   S  GG    ++ +    MGP+  +       A     E  +     DA   GK + + E                D    R+ + A   +A AA L+ A ++A+ LA  E+R+ ++L+A L+E ++++LE KL   +EL+  +E ER+ LE+ R +L+A + Q  L +
Sbjct:  548 WTEQETLLLLEALELYKDDWNKVCEHVGS-RTQDECILHFLRLPIEDPYLEDHEAGGALGPLAYQPIPFSKAG------------NP------------IMSTVAFLASVVDPRVAASAAKAAMV------------EFANIRDEVPAAL----------LDAHIKHVEASTADGKYDPSAGLVQSGIAGTQPEKEESEDKEKKEVGSEGEGSTGDSAVKTEAAAAAPGSTAGGP--SSTEVKNEDMGPQQSNNTSSTGAAAVTKTEGSEPMETEDA---GKKEEAPE----------------DAERERVVKDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEKEREGLEYQRQQLIAERQQFHLEQ 876
[Close]
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A2B4SQ03_STYPI (SWI/SNF complex subunit SMARCC2 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SQ03_STYPI)

HSP 1 Score: 58.5 bits (140), Expect = 6.310e-5
Identity = 63/215 (29.30%), Postives = 110/215 (51.16%), Query Frame = 1 
Query:  526 QNAPALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSKCEITAALVDSG-RGGSLLEASRIAESSMGPRNEDVIM-LEATAREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERRISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQ 1164
            Q  P +   + L S V P V  AAA AA     ++        K EI  +++DS  +  +   A ++ + S     E+    +E    +  V  G+  R  DA    K++ SSE  + A    K         E  I++AAA+    L+ A ++A+ LA+ E+R+ ++L+A L+E ++++LE KL   +EL+ +++ ER++LE+ R +LLA + Q
Sbjct:  658 QGNPIMSTVAFLASVVDPRVASAAAKAALEKFSEM--------KDEIPQSVIDSHVKNAANARAEKVKQESSDENKEETPQPMEVNGGQGTVVEGRETRAQDA----KAEESSEPSSQAQNGEKTPAIN----EENIAKAAAS---ALAAAAVKAKHLAQVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAERQQ 853
[Close]
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A8C1ZEB7_CYPCA (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1ZEB7_CYPCA)

HSP 1 Score: 58.2 bits (139), Expect = 8.210e-5
Identity = 73/231 (31.60%), Postives = 112/231 (48.48%), Query Frame = 1 
Query:  535 PALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSKCEITAALVD------------SGRGGSL--LEASRIA--ESSMGPRNEDVIMLE-ATAREPGVELGQARRDLDATSNG-----KSKRSSETHAAAPWALKRGIGRLDEVERRISRA--AAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLAN 1155
            P +   + L S V P V  AAA +A    E+ +R      K E+ AALV+            SGR   L  LE S IA  ES  G   E+    E     E  V  G+A RD + T +      K K   E              +  +VER +     A A A+ L+ A ++A+ LA  E+R+ ++L+A L+E ++++LE KL   +EL+ +++ ER++LE+ R +LLA+
Sbjct:  639 PVMSTVAFLASVVDPRVASAAAKSAL---EEFSRM-----KEEVPAALVEAHVRRVEEAARASGRPDPLYGLEGSGIAGTESKDGASEEEEKQGENGKKEEERVREGEAERDTEKTDSEMADGEKEKXRKEGSEXXXXXXXXXXEKKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD 861
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE9.110e-4237.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMT7_ECTSI1.320e-2682.72Phasmid Socket Absent family member (Psa-1) n=1 Ta... [more]
T1H8S7_RHOPR3.460e-724.43Uncharacterized protein n=5 Tax=Triatominae TaxID=... [more]
A0A2B4SQ03_STYPI6.310e-529.30SWI/SNF complex subunit SMARCC2 n=4 Tax=Pocillopor... [more]
A0A8C1ZEB7_CYPCA8.210e-531.60SWI/SNF related, matrix associated, actin dependen... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14343contigH-elongata_contig14343:4166..7994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog2880.D8LMT7
KEGG koko:K11649
KEGG Pathwayko04714,ko05225,map04714,map05225
GOsGO:0000228,GO:0000429,GO:0000436,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010453,GO:0010455,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016052,GO:0016514,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031494,GO:0031496,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032991,GO:0042221,GO:0042393,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044107,GO:0044109,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046164,GO:0046352,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000112,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5259@1,KOG1279@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size2704
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14343.2992.1prot_H-elongata_contig14343.2992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14343 4193..6472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.7128224-UTR-H-elongata_contig14343:4165..41921622929850.7128224-UTR-H-elongata_contig14343:4165..4192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14343 4166..4192 +
1691679182.868711-UTR-H-elongata_contig14343:4165..41921691679182.868711-UTR-H-elongata_contig14343:4165..4192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14343 4166..4192 +
1622929850.7904117-UTR-H-elongata_contig14343:6472..79941622929850.7904117-UTR-H-elongata_contig14343:6472..7994Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14343 6473..7994 +
1691679182.933288-UTR-H-elongata_contig14343:6472..79941691679182.933288-UTR-H-elongata_contig14343:6472..7994Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14343 6473..7994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.7269642-CDS-H-elongata_contig14343:4192..42431622929850.7269642-CDS-H-elongata_contig14343:4192..4243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 4193..4243 +
1691679182.877856-CDS-H-elongata_contig14343:4192..42431691679182.877856-CDS-H-elongata_contig14343:4192..4243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 4193..4243 +
1622929850.742561-CDS-H-elongata_contig14343:4581..55521622929850.742561-CDS-H-elongata_contig14343:4581..5552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 4582..5552 +
1691679182.8855762-CDS-H-elongata_contig14343:4581..55521691679182.8855762-CDS-H-elongata_contig14343:4581..5552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 4582..5552 +
1622929850.7597682-CDS-H-elongata_contig14343:5822..58711622929850.7597682-CDS-H-elongata_contig14343:5822..5871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 5823..5871 +
1691679182.9017332-CDS-H-elongata_contig14343:5822..58711691679182.9017332-CDS-H-elongata_contig14343:5822..5871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 5823..5871 +
1622929850.7763484-CDS-H-elongata_contig14343:6388..64721622929850.7763484-CDS-H-elongata_contig14343:6388..6472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 6389..6472 +
1691679182.917562-CDS-H-elongata_contig14343:6388..64721691679182.917562-CDS-H-elongata_contig14343:6388..6472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14343 6389..6472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14343.2992.1

>prot_H-elongata_contig14343.2992.1 ID=prot_H-elongata_contig14343.2992.1|Name=mRNA_H-elongata_contig14343.2992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=385bp
MEAAVATPDQWETVAFQVGGGRTPTACMRQFLNLAVEEVLGEQNEQGPAT
GRGATSEAWVSKIGTLPDGDSEGFAENPAQKGADGGAVKSIAPSLSLMRQ
DTPPQGGKAAAESTHVGVGSTSGKGGTESYSDIGEAVASAGTGFITGADV
DVDKDSHRRECRTPLGQNAPALMLASALVSSVHPEVLRAAASAAAVAAED
VARRWDASSKCEITAALVDSGRGGSLLEASRIAESSMGPRNEDVIMLEAT
AREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERR
ISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLH
CLDELDQVLEAERQSLEHDRAELLANQAQSMLSK*
back to top

mRNA from alignment at H-elongata_contig14343:4166..7994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14343.2992.1 ID=mRNA_H-elongata_contig14343.2992.1|Name=mRNA_H-elongata_contig14343.2992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3829bp|location=Sequence derived from alignment at H-elongata_contig14343:4166..7994+ (Himanthalia elongata Himel1 dioecious)
TGGCACCGCAAGGAGCTGGTTCGGTTGATGGAGGCAGCCGTTGCGACTCC
GGATCAGTGGGAAACCGTGGCTTTTCAGGTGCGGCGGCGGTATGGTACGG
TACGGTACGGTGTCGACCTCAGTGAAAGTCAGATGGGATATCTCGTACGT
TTTCTTTTGAGGTTGATTTTTTGCGCTTTCGCTGGAAATATACGAATAGA
AACATGATTAACCACATGTGACGATTTTGGGCTCAAATGTAGTAATGTAC
TCATGTGAACCCGACGATAGTCGATCCCCTGGATTGCGCCTCTTGAGTGC
CGCACGCATGGGTACATCCCGCTACTCATGCATCAATTTTTGTCTAACTC
GGCCCGAACGTCCTTAACACCATTCTGTCTCGATAAACATCCTCCCGGCC
CGGCCGGTGTGCGAAGGTTGGAGGAGGCCGCACCCCGACTGCTTGCATGC
GCCAGTTTCTCAACCTCGCCGTCGAGGAGGTGCTTGGAGAGCAGAATGAG
CAAGGGCCTGCGACCGGACGGGGGGCAACTTCAGAAGCGTGGGTGTCAAA
GATTGGTACCTTGCCAGACGGGGACTCGGAGGGTTTCGCGGAAAATCCTG
CCCAGAAAGGTGCCGATGGTGGCGCTGTGAAATCTATAGCGCCAAGTTTA
TCGCTTATGCGCCAAGATACACCTCCGCAAGGCGGAAAGGCAGCCGCGGA
ATCGACGCATGTTGGAGTTGGATCCACGTCTGGAAAAGGGGGGACGGAAT
CTTACAGTGATATCGGTGAGGCTGTCGCAAGCGCTGGCACTGGTTTCATT
ACCGGTGCCGATGTCGATGTCGACAAGGATTCCCATCGACGGGAATGTCG
GACTCCACTCGGCCAGAACGCCCCCGCTCTGATGCTTGCGTCGGCTCTTG
TGTCCAGCGTGCACCCGGAGGTGTTGCGGGCGGCGGCTTCGGCTGCCGCA
GTAGCGGCCGAGGACGTAGCTCGCCGATGGGATGCATCTTCGAAATGCGA
GATTACTGCCGCGTTGGTTGATTCGGGAAGGGGCGGCAGTCTTCTCGAGG
CCAGTCGCATCGCCGAAAGCAGCATGGGTCCGCGAAACGAGGACGTCATC
ATGCTCGAAGCCACGGCGCGGGAACCCGGCGTGGAGCTAGGGCAGGCACG
CAGAGACCTGGATGCTACTTCAAACGGGAAGAGTAAACGATCCTCGGAAA
CGCACGCCGCCGCGCCTTGGGCATTGAAGCGAGGCATTGGTCGGTTGGAC
GAGGTGGAACGCCGAATTTCCAGAGCAGCAGCCGCGCGGGCGGCGGTGCT
ATCTGTGGCGGGTCTCCAAGCTCGCGGGCTGGCAGAACAGGAAGACCGAC
GAACAGAAGCGCTAATCGCAGATCTTCTAGAAGCCAGGTGGGGATGGGTG
TCCCGAGACGAGACGGGTAAGATACACTCTGATGTCGTTGTTTTGTGCGA
CGGTGTTTTGTTCCCCCACCGTCTGAAGACGGGGAAAGGATTGGTTTTGT
GTGCTCAAGGTAGGACATCTGGAGAGGCTTCTCTAGCTGGCACCAGCTCG
ACACATCCAGGTTTCCATGCGCAGAGCATGTGGTGTGTTGTGCGCGTGCA
ATCGCTGCGTTGTGATGATTTGCCTCTCCCCCTTCGTCCGTTCGTGGTAT
GTCGTAGGCTCCAACGGTTGGAGACGAAGCTCCATTGCTTGGACGAGCTT
GATCAGGTCAGTGCCGCACTTTTAACTTTGTGCATATTCGCGCTTTCCTA
CGCCCGTCGCCCGCTGTAACGCTCCCGTCCTACGATTTTAGAAGACCTCG
CGGAGTTTTTGTCGGTCCTAAAGCGTTTTTTACTGCATCGCATCGAGAGT
GTGTTTCGCCACAGGCGTCAAAACGCATCCTTTCAAAATATCGTGTAGCC
TCCGTTTGGCGCGGTGCTTCCTTTTCTCCCCGTTGGCGACTTACTCGCCA
GCCAATGGTCACGATAGGGCAACCATGGAGGCTCCGAAAAATTAACTGAA
AGTTGTCATAGTCCATATATCGGTATATATTTATATTTCATTATCCGCCC
CCTCCGTACGACCGGTTGTCCATCGGCGATTTATGATGTAGGAAAAATAT
CCCGCCCTCCCGCGGATACGTGGTCAATAGTTTATTAGATTATGCATGCA
AAACATGAATACGCTCTACCCCCTTCCGCGATACTCATCTGGGTTTGATA
TTTTTGTTTTTGCTGTAATCCAGGTTCTGGAAGCCGAGCGCCAGTCGCTG
GAGCACGACAGAGCCGAGCTACTTGCAAATCAGGCGCAATCGATGCTCTC
GAAGTGACTTAACTCGCCACGGCGGCCGCTGGTAGGATTTTGCTTTTGTA
TGTTTGGCGGCAAGCGTCGGCCTCTTGGTTCTAGCGGATCCTTCTTCGTG
GATATGCCATTTTCTGACCCTTTTCTCCGCGTGGTGGAAATTTCCCAACT
AAGTTCCACGCGGTATAGCTGCTGGAGCCCTGTCTGTGATAATGCGCGAT
ATCGAGAGAGGGAGGTAAATCGGAGGGACCTTGTGGGTGGTGGTGAGCGT
TTTATATATTAGGTGTTTTCCTGCTCGGAGAGGCTAATGACGGGGGTGGA
CGGTCGGTTCTGTTATTATCTGTGCCGAAACGAAAGCGCGGTCGGTACCT
TTGACCTTTGACCTTTGGGTCGTCGTCTTTTGTTGGCGGCGGCGAAAGCG
TGGCTGATGGCTGATGGCGGTGATTTGAGCTCCCTCAACCGTTCTCGCGG
CGCAGACAGCACGTTCGTCGAGAGGAACGATTCTTAATTTGTAATTTGTC
CGTGCTGGTTGTTGCGGTCGTTGACCTTTTGTTGGACGGAATGGTTTATC
GCCAGAGAGCGTGTTATACGTGATGTGATGCGATGAACTTGGGGCAGGCA
GATGGTGAGTTGTTATGATGCTAGGCATACTGACTGGTAAGGTTGAACGA
CATATGATGACGTGCAGACGACCAGGTTTTTGACGCCCACGACTTTTTGA
GGTGGTGGATGACGGATGAGCGATCGGGATGTCATTGAATAGGCAGGCTG
GGGAGCAAGATACACGGTTAGAAGGGACCGGAATCAGCGGACGGGACTGT
GTCCGAGTCTTTGCTGCGGCTCGATACTGTTTTTCCCGTATCTTGTCTTT
CCTTCTCTGTTTGCTTGTACTGTTTGAAGCTGGCGCAAAATCCAGGGTGT
TCGTAGTTCGCTACTTCCAGAGTTGCTTGTACAACAAGTGAATAAATAGT
ACGTGAAGGGTGGCGGCAGGCGATCGGTCGTTTTGTCGAGCTCGTGGCAC
CTCCCCCCTGCAGCGTGGATCAAATTCTCTTGTGCGTTTGGCATTCACGT
GTGTGTGTGTCGTTGTTTCTCTTCTCAGTCGCCAGACGAGATGGTTTCTC
TCTGCTTTATCTCTTAAGTTGATTGATTTTCGAAAATATTTACAGTAGTC
AGGTTGATGACTAATCCTTGAGTTGAACGTCCCCGCCGCGACCATCCCGG
TAGGGAAACAGCAATAGCTTGATGGCGCGCTTTCACGCGGAATGGGATGG
TGGATGGACTGAAACTATGGTGTGCGTCATATATATATATATATATATAT
ATATATATTCTCGAGTGCATTTACTTGAAAAGCGCTTGCTTGTATTGAAA
ATATGGCGAGCCACGTGTGTTCGTCCGGCGTATTCCTGTCGTGCACCTGT
TGTCCGTTCTTCTATGGTGCACGCGTTTATCTGTGATAGCTGAAGATAAA
AAGAGCATTATTATTAGAGAACATAATCGGCGGCTACGTAATAAAAATAA
TCGGCGGCTACGTCCCGAGGTACCGCCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14343:4166..7994+

>mRNA_H-elongata_contig14343.2992.1 ID=mRNA_H-elongata_contig14343.2992.1|Name=mRNA_H-elongata_contig14343.2992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2310bp|location=Sequence derived from alignment at H-elongata_contig14343:4166..7994+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGCAGCCGTTGCGACTCCGGATCAGTGGGAAACCGTGGCTTTTCA
GATGGAGGCAGCCGTTGCGACTCCGGATCAGTGGGAAACCGTGGCTTTTC
AGGTTGGAGGAGGCCGCACCCCGACTGCTTGCATGCGCCAGTTTCTCAAC
CTCGCCGTCGAGGAGGTGCTTGGAGAGCAGAATGAGCAAGGGCCTGCGAC
CGGACGGGGGGCAACTTCAGAAGCGTGGGTGTCAAAGATTGGTACCTTGC
CAGACGGGGACTCGGAGGGTTTCGCGGAAAATCCTGCCCAGAAAGGTGCC
GATGGTGGCGCTGTGAAATCTATAGCGCCAAGTTTATCGCTTATGCGCCA
AGATACACCTCCGCAAGGCGGAAAGGCAGCCGCGGAATCGACGCATGTTG
GAGTTGGATCCACGTCTGGAAAAGGGGGGACGGAATCTTACAGTGATATC
GGTGAGGCTGTCGCAAGCGCTGGCACTGGTTTCATTACCGGTGCCGATGT
CGATGTCGACAAGGATTCCCATCGACGGGAATGTCGGACTCCACTCGGCC
AGAACGCCCCCGCTCTGATGCTTGCGTCGGCTCTTGTGTCCAGCGTGCAC
CCGGAGGTGTTGCGGGCGGCGGCTTCGGCTGCCGCAGTAGCGGCCGAGGA
CGTAGCTCGCCGATGGGATGCATCTTCGAAATGCGAGATTACTGCCGCGT
TGGTTGATTCGGGAAGGGGCGGCAGTCTTCTCGAGGCCAGTCGCATCGCC
GAAAGCAGCATGGGTCCGCGAAACGAGGACGTCATCATGCTCGAAGCCAC
GGCGCGGGAACCCGGCGTGGAGCTAGGGCAGGCACGCAGAGACCTGGATG
CTACTTCAAACGGGAAGAGTAAACGATCCTCGGAAACGCACGCCGCCGCG
CCTTGGGCATTGAAGCGAGGCATTGGTCGGTTGGACGAGGTGGAACGCCG
AATTTCCAGAGCAGCAGCCGCGCGGGCGGCGGTGCTATCTGTGGCGGGTC
TCCAAGCTCGCGGGCTGGCAGAACAGGAAGACCGACGAACAGAAGCGCTA
ATCGCAGATCTTCTAGAAGCCAGGTTGGAGGAGGCCGCACCCCGACTGCT
TGCATGCGCCAGTTTCTCAACCTCGCCGTCGAGGAGGTGCTTGGAGAGCA
GAATGAGCAAGGGCCTGCGACCGGACGGGGGGCAACTTCAGAAGCGTGGG
TGTCAAAGATTGGTACCTTGCCAGACGGGGACTCGGAGGGTTTCGCGGAA
AATCCTGCCCAGAAAGGTGCCGATGGTGGCGCTGTGAAATCTATAGCGCC
AAGTTTATCGCTTATGCGCCAAGATACACCTCCGCAAGGCGGAAAGGCAG
CCGCGGAATCGACGCATGTTGGAGTTGGATCCACGTCTGGAAAAGGGGGG
ACGGAATCTTACAGTGATATCGGTGAGGCTGTCGCAAGCGCTGGCACTGG
TTTCATTACCGGTGCCGATGTCGATGTCGACAAGGATTCCCATCGACGGG
AATGTCGGACTCCACTCGGCCAGAACGCCCCCGCTCTGATGCTTGCGTCG
GCTCTTGTGTCCAGCGTGCACCCGGAGGTGTTGCGGGCGGCGGCTTCGGC
TGCCGCAGTAGCGGCCGAGGACGTAGCTCGCCGATGGGATGCATCTTCGA
AATGCGAGATTACTGCCGCGTTGGTTGATTCGGGAAGGGGCGGCAGTCTT
CTCGAGGCCAGTCGCATCGCCGAAAGCAGCATGGGTCCGCGAAACGAGGA
CGTCATCATGCTCGAAGCCACGGCGCGGGAACCCGGCGTGGAGCTAGGGC
AGGCACGCAGAGACCTGGATGCTACTTCAAACGGGAAGAGTAAACGATCC
TCGGAAACGCACGCCGCCGCGCCTTGGGCATTGAAGCGAGGCATTGGTCG
GTTGGACGAGGTGGAACGCCGAATTTCCAGAGCAGCAGCCGCGCGGGCGG
CGGTGCTATCTGTGGCGGGTCTCCAAGCTCGCGGGCTGGCAGAACAGGAA
GACCGACGAACAGAAGCGCTAATCGCAGATCTTCTAGAAGCCAGGCTCCA
ACGGTTGGAGACGAAGCTCCATTGCTTGGACGAGCTTGATCAGGCTCCAA
CGGTTGGAGACGAAGCTCCATTGCTTGGACGAGCTTGATCAGGTTCTGGA
AGCCGAGCGCCAGTCGCTGGAGCACGACAGAGCCGAGCTACTTGCAAATC
AGGCGCAATCGATGCTCTCGAAGTGAGTTCTGGAAGCCGAGCGCCAGTCG
CTGGAGCACGACAGAGCCGAGCTACTTGCAAATCAGGCGCAATCGATGCT
CTCGAAGTGA
back to top