mRNA_H-elongata_contig14343.2991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig14343.2991.1
Unique Name	mRNA_H-elongata_contig14343.2991.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 9.160e-59
Identity = 159/377 (42.18%), Postives = 195/377 (51.72%), Query Frame = 1

Query:   10 KPLLDPKVKEVVSQDLATEEIRRVRRKDSDPSRPSLPFLHQARAADGARSAWNEKRAALLPNGEAPPPPRYQENGKDGRSQAATAVETSGGERGAPGTQSEPGAPAAIAPPELGKAREGEGKEG---ERARLSGIDTKPNGVISSKKPVEPPPSSVGELAASALATPTAEAIPGQDPTSPERGIGAGSSDGEATETTGNCRGDGSSSKPKRLEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHLWN--PTLAGP 1125
            KPL DPKV EVVSQDLAT+EI+R                 Q    +G   A  E+++ L   G+        E    G S+  TA        G+ G Q  P        P++G +    G+     E  R  G  TKPNGV  +      P  + G +    L   +A  +P    +    G G   S     +T    R    +        E                 EEG  +ER     +   +CP+HALPVAR FFD+++VS  EMR LPEFFTGRSASKT EMY+QSRNYMVRSYQRMLE D +GQA++TGTECRRKLAGD CSILRIHDFLDRFGLINTR  G+RP S+ + PP+ HLWN  P  AGP
Sbjct:  347 KPLEDPKVDEVVSQDLATQEIKR----------------RQQPRPNGGGKAEGEEKSGLGKLGK--------ERTSAGGSEPQTA--------GSKGKQDPP--------PKVGGSGNAAGESSGGDEGVRAEGKSTKPNGVAVAGAASSSPSKAAGAMPPP-LPKSSAVDLPSSTSSLSSSGPGESPSSTSDRKTAVKARSSEGARPGPEARKETXXXXXXXXXXXXXXXXEEGAGEER-----RTISQCPDHALPVARTFFDFEAVSDLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAVGQRPASYSIAPPATHLWNQTPRSAGP 677

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.570e-53
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 1

Query:  721 GRGKRQKGPRCPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHLWN--PTLAGPGHP 1134
            G  KR   P CP+HALPVAR FFD+++VS  EMR LPEFFTGRSASKT EMY+QSRNYMVRSYQRMLE D +GQA++ GTECRRKLAGD CSILRIHDFL RF L+NTRT G+RP S+ + PP+ HLW   P  AGP  P
Sbjct:  424 GEEKRTTSP-CPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLMGTECRRKLAGDACSILRIHDFLHRFRLLNTRTVGKRPASYSLAPPAPHLWKHTPRSAGPAPP 562

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A2G9RJT8_LITCT (SWIRM domain-containing protein (Fragment) n=5 Tax=Ranidae TaxID=8397 RepID=A0A2G9RJT8_LITCT)

HSP 1 Score: 105 bits (263), Expect = 2.310e-23
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1

Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   33 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 138

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L2UIE3_BALRX (SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID=8825 RepID=A0A7L2UIE3_BALRX)

HSP 1 Score: 107 bits (268), Expect = 4.640e-23
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 1

Query:  655 GLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            GLW+ EE +  G           +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   82 GLWQDEEENGTG----------SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 223

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A6J1WID0_GALME (SWI/SNF complex subunit SMARCC2-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WID0_GALME)

HSP 1 Score: 101 bits (251), Expect = 2.960e-22
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 1

Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+S+   E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N   Y+T T CRR LAGDVC+I+R+H FL+++GL+N +      P+    PP+ H 
Sbjct:   20 VPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPTEYLTSTACRRNLAGDVCAIMRVHGFLEQWGLVNYQLEAESRPTAMGPPPTSHF 125

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A4W3GTU1_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GTU1_CALMI)

HSP 1 Score: 105 bits (263), Expect = 6.410e-22
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1

Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   84 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 189

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L2PWU7_9PASS (SMRC2 protein (Fragment) n=1 Tax=Hypocryptadius cinnamomeus TaxID=589841 RepID=A0A7L2PWU7_9PASS)

HSP 1 Score: 106 bits (264), Expect = 6.870e-22
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 1

Query:  634 LEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            L+++ED+ +    ET+ K   E G      +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  186 LDEQEDESM----ETAGKDEEENGTG---SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 337

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L3XKW0_9AVES (SMRC2 protein (Fragment) n=1 Tax=Calonectris borealis TaxID=1323832 RepID=A0A7L3XKW0_9AVES)

HSP 1 Score: 107 bits (268), Expect = 7.750e-22
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 1

Query:  655 GLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            GLW+ EE +  G           +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  296 GLWQDEEENGTG----------SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 437

[Close]

BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A4W3GVH8_CALMI (SWIRM domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GVH8_CALMI)

HSP 1 Score: 105 bits (263), Expect = 7.870e-22
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1

Query:  766 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  186 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 291

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BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A091V6D9_NIPNI (SWI/SNF complex subunit SMARCC1 (Fragment) n=1 Tax=Nipponia nippon TaxID=128390 RepID=A0A091V6D9_NIPNI)

HSP 1 Score: 106 bits (264), Expect = 8.100e-22
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 1

Query:  634 LEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 1101
            L+++ED+ +    ET+ K   E G      +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  251 LDEQEDESM----ETAGKDEEENGTG---SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 402

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JSE9_9PHAE	9.160e-59	42.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LMT8_ECTSI	5.570e-53	70.00	Internalin protein n=1 Tax=Ectocarpus siliculosus ...	[more]
A0A2G9RJT8_LITCT	2.310e-23	46.43	SWIRM domain-containing protein (Fragment) n=5 Tax...	[more]
A0A7L2UIE3_BALRX	4.640e-23	39.24	SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID...	[more]
A0A6J1WID0_GALME	2.960e-22	42.86	SWI/SNF complex subunit SMARCC2-like n=1 Tax=Galle...	[more]
A0A4W3GTU1_CALMI	6.410e-22	46.43	Uncharacterized protein n=1 Tax=Callorhinchus mili...	[more]
A0A7L2PWU7_9PASS	6.870e-22	38.79	SMRC2 protein (Fragment) n=1 Tax=Hypocryptadius ci...	[more]
A0A7L3XKW0_9AVES	7.750e-22	39.24	SMRC2 protein (Fragment) n=1 Tax=Calonectris borea...	[more]
A0A4W3GVH8_CALMI	7.870e-22	46.43	SWIRM domain-containing protein n=1 Tax=Callorhinc...	[more]
A0A091V6D9_NIPNI	8.100e-22	38.79	SWI/SNF complex subunit SMARCC1 (Fragment) n=1 Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14343	contig	H-elongata_contig14343:403..3997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	196.8
Seed ortholog evalue	1.8e-47
Seed eggNOG ortholog	2880.D8LMT8
KEGG ko	ko:K11649
KEGG Pathway	ko04714,ko05225,map04714,map05225
GOs	GO:0000228,GO:0000429,GO:0000436,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010453,GO:0010455,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016052,GO:0016514,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031494,GO:0031496,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032991,GO:0042221,GO:0042393,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044107,GO:0044109,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046164,GO:0046352,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000112,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.	chromatin remodeling
EggNOG OGs	COG5259@1,KOG1279@2759
COG Functional cat.	BK
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03021,ko03036
Hectar predicted targeting category	other localisation
Exons	5
Model size	1134
Cds size	1134
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14343.2991.1	prot_H-elongata_contig14343.2991.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig14343 403..3997 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929850.5488634-CDS-H-elongata_contig14343:402..441	1622929850.5488634-CDS-H-elongata_contig14343:402..441	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 403..441 +
1691679182.8202136-CDS-H-elongata_contig14343:402..441	1691679182.8202136-CDS-H-elongata_contig14343:402..441	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 403..441 +
1622929850.56708-CDS-H-elongata_contig14343:996..1480	1622929850.56708-CDS-H-elongata_contig14343:996..1480	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 997..1480 +
1691679182.8320146-CDS-H-elongata_contig14343:996..1480	1691679182.8320146-CDS-H-elongata_contig14343:996..1480	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 997..1480 +
1622929850.6088867-CDS-H-elongata_contig14343:1546..1893	1622929850.6088867-CDS-H-elongata_contig14343:1546..1893	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 1547..1893 +
1691679182.8406222-CDS-H-elongata_contig14343:1546..1893	1691679182.8406222-CDS-H-elongata_contig14343:1546..1893	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 1547..1893 +
1622929850.6325238-CDS-H-elongata_contig14343:3403..3537	1622929850.6325238-CDS-H-elongata_contig14343:3403..3537	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 3404..3537 +
1691679182.849882-CDS-H-elongata_contig14343:3403..3537	1691679182.849882-CDS-H-elongata_contig14343:3403..3537	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 3404..3537 +
1622929850.6442707-CDS-H-elongata_contig14343:3867..3997	1622929850.6442707-CDS-H-elongata_contig14343:3867..3997	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 3868..3997 +
1691679182.860451-CDS-H-elongata_contig14343:3867..3997	1691679182.860451-CDS-H-elongata_contig14343:3867..3997	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14343 3868..3997 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig14343:403..3997+
coding sequence from alignment at H-elongata_contig14343:403..3997+

protein sequence of mRNA_H-elongata_contig14343.2991.1

>prot_H-elongata_contig14343.2991.1 ID=prot_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
DALKPLLDPKVKEVVSQDLATEEIRRVRRKDSDPSRPSLPFLHQARAADG
ARSAWNEKRAALLPNGEAPPPPRYQENGKDGRSQAATAVETSGGERGAPG
TQSEPGAPAAIAPPELGKAREGEGKEGERARLSGIDTKPNGVISSKKPVE
PPPSSVGELAASALATPTAEAIPGQDPTSPERGIGAGSSDGEATETTGNC
RGDGSSSKPKRLEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPR
CPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMV
RSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRT
GGRRPPSFPVLPPSVHLWNPTLAGPGHP

mRNA from alignment at H-elongata_contig14343:403..3997+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig14343.2991.1 ID=mRNA_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3595bp|location=Sequence derived from alignment at H-elongata_contig14343:403..3997+ (Himanthalia elongata Himel1 dioecious)
GATGCGCTGAAGCCTCTACTCGATCCGAAAGTCAAGGAGGTAATGTGGAG
AAAAGAAGGGAAGATATATCGATCTTCTTTGAGAAATAAATAAATATATA
TATATGTATATATCAAATCATTCAAACCCTCCGAACATCCACGCCTTCTT
AGCACCGTCAGAGGTTTCTTTCCTGATCGTGGCCCTCTCACGAATTCCGC
GATCCATTGTGTGGATAAGGAATTCTTATGCGGGATGTGTCGCCGTCCTC
CGGTGTCAACACCAAGAGGCGGTGTATGAAGTCGTGCAAAGAAGCGGGAA
TGTTTGCGGCTTGAAGACCAGCGCTCCTTACGTACGGTAGTTGGGGGTCT
TGACCCAGAATGTGTTGTCATTTTTTTTCCCGAGCAGCTTGAAGGGTCCA
GAAAACTCCTCGATTTCACCCCTTGTGTAAAGAAGATGGAGATGTTTGGA
TTGTTTGAGTGAGTTCTTACGTTTTAAAAATAAATCGCTCGGATTCGCTC
ACCCCGTTCAGTCAGCGAGCCCGTTTCGAGCTATCGATCACACACTCTGG
TTCCCTTTGCTGCTATCGATGGCCTCCGCCCCAACACTTTCCAGGTGGTC
TCTCAAGACCTTGCGACCGAAGAGATTCGCCGCGTTCGGCGAAAGGATAG
CGATCCATCACGGCCTTCGTTGCCGTTTCTGCACCAAGCCCGAGCTGCAG
ATGGAGCACGTTCGGCGTGGAACGAAAAGCGTGCAGCACTACTGCCGAAT
GGCGAGGCCCCGCCACCACCACGATATCAAGAAAACGGGAAGGATGGCCG
CTCGCAGGCAGCAACAGCGGTGGAAACCAGTGGGGGTGAGCGAGGGGCAC
CGGGCACCCAGAGTGAGCCGGGCGCTCCGGCTGCCATAGCCCCTCCCGAG
CTTGGAAAGGCTAGGGAAGGGGAGGGTAAGGAGGGAGAGCGAGCAAGGCT
CTCCGGCATCGACACGAAGCCAAACGGGGTAATCTCGTCGAAGAAACCCG
TGGAGCCTCCGCCGTCGTCAGTGGGAGAACTCGCAGCGTCGGCACTTGCT
ACACCCACGGCTGAAGCCATCCCTGGCCGTTTCTCGGGCGGCTGGTGCAA
TTCGGCCTGGATGTCGCGGCCTTTCCCCGAAAAGCTTGCACAAGAAGACC
CGACGTCGCCCGAGCGCGGGATCGGTGCCGGGAGCAGTGATGGCGAGGCA
ACAGAGACTACGGGTAACTGCCGCGGTGACGGCAGCAGCTCGAAGCCGAA
GCGACTAGAAGATGAGGAGGACCAGGGACTCTGGCGAAAGGAGGAAACCT
CAGCGAAGGGGGTCAGCGAGGAGGGTTTGGAGAAAGAGAGGGGAAGGGGA
AAGCGTCAGAAAGGTCCCCGGTGTCCAGAGCACGCGCTGCCGGTGGCGCG
AGCTTTCTTTGACTACGATTCTGTGAGCGCCTTCGAGATGAGGACGCTGC
CCGAGTTTTTCACCGGCCGTAGCGCTTCAAAGACGGCGGAGGTGAGTCAG
CGTTCGTAACAAGCCCGTGCGGCGAGCGGCATCTTTGAATGGGACTGACG
TCATTCTGATGAATGCTCTGGTCTGGTAGGCGTTGACGATGACAATCCCG
TTTGTTGCCCAACCGGAATGGTGTTTCATTTCTGTTAAAAGCCTGGGAAA
TGATGCATAGTAAATATTCCGTTTTCATTAATAAATGGATATATATATAT
ATATATATATATATTAGATATCGGGCAATTTTCATTCTTAGTATAGAGAA
GAAAATACCCAAAATAACTTACATAAAAATAAAGAAAGTAAAAATATTGT
ATTAAGCATCATTTTTGCTTAGGGTCGGTTTATACGGACTCTTAAAAAAT
CAATATTTTTGAATTTCTTGATTCAAAATATTGAATCGAACCATTTTTTT
AGGTTCAGTTTATACTCGTTTTTGTCTGGAATATTGACAAAACTCGTCCC
CGTACGGCATGTTGACAAAAGCCTCAATTTGTGCTATAAACCAGTAGCAC
CACACGGTACGAATTTCAAACCATGTTCTCTCACATGAGTGCTCGTAGGT
CGACCTTCAAGGTGGAAGTGGCAGCTATTATATTTATGTGTGATGGTGCT
ATTCGGGCTGCGGTACCAATTTCAAACTATATTTTCTCGCGTGAGTGCTC
GTAGCTCGACTGCTACAAGCATGGAAAGTTATTTTAGGGCCCGCTCTGCG
TCTCCAGGCAGCATAGTTTATGCATCGTTTTCTCGAGCTTATCTTATCAC
GAGAAAGGCAGCATGGAATGCCCCAACTACAACCGCTGCCATAACTCCCA
GAGTAAGAAAGCGACGCGATAAGATGATGTTCCCTCTTAACAAAAGGTTG
GAACGTGAGCCCATATGTCGTGGTTGGGTGCACCAACCGCTGGAGTGGTG
GGTCTGTACGGTATCGGTAAACACGCATTTGGGATCTGCAAAATCTGCAA
AAATGCACAGTTCTCTCCCGGGTCACGCGCACCTCCAGCACGCTTGTTCA
CCCCTGACATTGTCTGCTGACATTGGCTACTTGAGTTCATCCCTGACATT
GACTACTTGATTTACGTACGAAGCCCCACGGTGTTAGGTATGTGCTTCGG
TGTTCCCATGAGAAGGCGTGCCGCCTTCATATTCAATATGTTTGACATTC
AAAAATATTGAATATGAAGGAGCGTGAAAAATGAAACGCTCCTTCACATT
CTTTTTTTGGCATGAAAAACAATTTTATTGACGTCAATTAAAAAAAATGA
ATTTATTTTGTTCGTATAAACCGACCCTTACATGACAGATACCCTTTTTT
TTTAATTTTCTAAATGAAAATGAGAGAGTGTGTCGCGAATCTATTAGGAA
TATAATTCACGTGTGTGAAATAAAGGCGACCAGGATCAATCCATTACTGA
TACAAGAAGTTGACGAAGTCCCATATTGGCCATTATCCGTCCATTGTTTT
GTATCTCTCTTTCTCTGGTACACGGCACATTTTGCCCATTCACCTCACCA
GATGTACATTCAGTCGCGTAACTACATGGTGCGGTCTTACCAACGCATGC
TGGAGACGGACAGAAATGGACAGGCCTATATGACGGGGACGGAGTGCCGT
CGGAAGCTCGCTGGTGACGTCTGCTCTATTCTACGGTGCGAACGCCTCCC
TATTTTATTTGGTCGTGTACCCCCCACCCCCCACCGATACCTCGAGACGT
CACCGCTAACTACGCTGTATTCTTGAGTGGCGAATGAAATTGATTAGGAA
GCGGAGAGGAAGGGAATAAAGCTCGATTCGTATTGCTGTCGGACACCCCA
CGGAGGTTGAGGTATTTTCTCGAAAGATGCCCACGTATGAGACGCAACGC
GACACGGCAGAACCTCTCGTAAGTGTCTTTACTATGCTGTGTGCAGGTTG
CACTCCGCAGCCCTTGCTAGCGGTCTTACTCCTTCAAAACCCGGATCCCA
ATAATCCCTTTTCAGGATACACGACTTTCTAGATCGCTTCGGTCTCATCA
ACACGCGGACGGGCGGGAGGCGTCCCCCGTCTTTCCCCGTCCTACCGCCG
TCGGTGCACTTGTGGAATCCGACGCTCGCCGGGCCGGGGCATCCT

Coding sequence (CDS) from alignment at H-elongata_contig14343:403..3997+

>mRNA_H-elongata_contig14343.2991.1 ID=mRNA_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2268bp|location=Sequence derived from alignment at H-elongata_contig14343:403..3997+ (Himanthalia elongata Himel1 dioecious)
GATGCGCTGAAGCCTCTACTCGATCCGAAAGTCAAGGAGGATGCGCTGAA
GCCTCTACTCGATCCGAAAGTCAAGGAGGTGGTCTCTCAAGACCTTGCGA
CCGAAGAGATTCGCCGCGTTCGGCGAAAGGATAGCGATCCATCACGGCCT
TCGTTGCCGTTTCTGCACCAAGCCCGAGCTGCAGATGGAGCACGTTCGGC
GTGGAACGAAAAGCGTGCAGCACTACTGCCGAATGGCGAGGCCCCGCCAC
CACCACGATATCAAGAAAACGGGAAGGATGGCCGCTCGCAGGCAGCAACA
GCGGTGGAAACCAGTGGGGGTGAGCGAGGGGCACCGGGCACCCAGAGTGA
GCCGGGCGCTCCGGCTGCCATAGCCCCTCCCGAGCTTGGAAAGGCTAGGG
AAGGGGAGGGTAAGGAGGGAGAGCGAGCAAGGCTCTCCGGCATCGACACG
AAGCCAAACGGGGTAATCTCGTCGAAGAAACCCGTGGAGCCTCCGCCGTC
GTCAGTGGGAGAACTCGCAGCGTCGGCACTTGCTACACCCACGGCTGAAG
CCATCCCTGGCCGTGGTCTCTCAAGACCTTGCGACCGAAGAGATTCGCCG
CGTTCGGCGAAAGGATAGCGATCCATCACGGCCTTCGTTGCCGTTTCTGC
ACCAAGCCCGAGCTGCAGATGGAGCACGTTCGGCGTGGAACGAAAAGCGT
GCAGCACTACTGCCGAATGGCGAGGCCCCGCCACCACCACGATATCAAGA
AAACGGGAAGGATGGCCGCTCGCAGGCAGCAACAGCGGTGGAAACCAGTG
GGGGTGAGCGAGGGGCACCGGGCACCCAGAGTGAGCCGGGCGCTCCGGCT
GCCATAGCCCCTCCCGAGCTTGGAAAGGCTAGGGAAGGGGAGGGTAAGGA
GGGAGAGCGAGCAAGGCTCTCCGGCATCGACACGAAGCCAAACGGGGTAA
TCTCGTCGAAGAAACCCGTGGAGCCTCCGCCGTCGTCAGTGGGAGAACTC
GCAGCGTCGGCACTTGCTACACCCACGGCTGAAGCCATCCCTGGCCAAGA
CCCGACGTCGCCCGAGCGCGGGATCGGTGCCGGGAGCAGTGATGGCGAGG
CAACAGAGACTACGGGTAACTGCCGCGGTGACGGCAGCAGCTCGAAGCCG
AAGCGACTAGAAGATGAGGAGGACCAGGGACTCTGGCGAAAGGAGGAAAC
CTCAGCGAAGGGGGTCAGCGAGGAGGGTTTGGAGAAAGAGAGGGGAAGGG
GAAAGCGTCAGAAAGGTCCCCGGTGTCCAGAGCACGCGCTGCCGGTGGCG
CGAGCTTTCTTTGACTACGATTCTGTGAGCGCCTTCGAGATGAGGACGCT
GCCCGAGTTTTTCACCGGCCGTAGCGCTTCAAAGACGGCGGAGAAGACCC
GACGTCGCCCGAGCGCGGGATCGGTGCCGGGAGCAGTGATGGCGAGGCAA
CAGAGACTACGGGTAACTGCCGCGGTGACGGCAGCAGCTCGAAGCCGAAG
CGACTAGAAGATGAGGAGGACCAGGGACTCTGGCGAAAGGAGGAAACCTC
AGCGAAGGGGGTCAGCGAGGAGGGTTTGGAGAAAGAGAGGGGAAGGGGAA
AGCGTCAGAAAGGTCCCCGGTGTCCAGAGCACGCGCTGCCGGTGGCGCGA
GCTTTCTTTGACTACGATTCTGTGAGCGCCTTCGAGATGAGGACGCTGCC
CGAGTTTTTCACCGGCCGTAGCGCTTCAAAGACGGCGGAGATGTACATTC
AGTCGCGTAACTACATGGTGCGGTCTTACCAACGCATGCTGGAGACGGAC
AGAAATGGACAGGCCTATATGACGGGGACGGAGTGCCGTCGGAAGCTCGC
TGGTGACGTCTGCTCTATTCTACGATGTACATTCAGTCGCGTAACTACAT
GGTGCGGTCTTACCAACGCATGCTGGAGACGGACAGAAATGGACAGGCCT
ATATGACGGGGACGGAGTGCCGTCGGAAGCTCGCTGGTGACGTCTGCTCT
ATTCTACGGATACACGACTTTCTAGATCGCTTCGGTCTCATCAACACGCG
GACGGGCGGGAGGCGTCCCCCGTCTTTCCCCGTCCTACCGCCGTCGGTGC
ACTTGTGGAATCCGACGCTCGCCGGGCCGGGGCATCCTGATACACGACTT
TCTAGATCGCTTCGGTCTCATCAACACGCGGACGGGCGGGAGGCGTCCCC
CGTCTTTCCCCGTCCTACCGCCGTCGGTGCACTTGTGGAATCCGACGCTC
GCCGGGCCGGGGCATCCT