mRNA_H-elongata_contig143210.2984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143210.2984.1
Unique NamemRNA_H-elongata_contig143210.2984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: D7FJJ0_ECTSI (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 6.930e-23
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    7 RRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGFE 156
            RRIPEADISMK GKWERKKFMG ELKGKT+AIVGCGRIGQMVA+WAQGF+
Sbjct:  195 RRIPEADISMKAGKWERKKFMGQELKGKTIAIVGCGRIGQMVAKWAQGFD 244
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A835Z0M8_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.840e-19
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    7 RRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGF 153
            RRI EAD SMK GKWERKKFMG EL GKT+A+VGCGRIGQ VA+WAQGF
Sbjct:  144 RRISEADASMKSGKWERKKFMGTELGGKTIAVVGCGRIGQQVAKWAQGF 192
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A6U4F3N0_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F3N0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.660e-16
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 RRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWA 144
            R IP AD+SMK GKWERK F G+ELKGKTLAIVGCGRIG +VA+WA
Sbjct:  140 RSIPAADMSMKAGKWERKAFSGVELKGKTLAIVGCGRIGMVVAKWA 185
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: W7T1C1_9STRA (D-3-phosphoglycerate dehydrogenase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T1C1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-15
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 RRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGFE 156
            R +  AD+SMK GKWER K MG EL GKTLA+VGCGRIGQ VA+W Q F+
Sbjct:   26 RSLARADMSMKAGKWERSKLMGTELAGKTLAVVGCGRIGQQVAKWGQAFD 75
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A4D9D253_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D253_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-15
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 RRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGFE 156
            R +  AD+SMK GKWER K MG EL GKTLA+VGCGRIGQ VA+W Q F+
Sbjct:  150 RSLARADMSMKAGKWERSKLMGTELAGKTLAVVGCGRIGQQVAKWGQAFD 199
[Close]
BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A7S2V587_9STRA (Phosphoglycerate dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V587_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-15
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    7 RRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQ 147
            R +  AD+SMK GK+ERKK+MG+ELKGKTLA+VGCGRIGQ VA+WAQ
Sbjct:   26 RNVAAADMSMKEGKFERKKYMGVELKGKTLAVVGCGRIGQTVAKWAQ 72
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A7W0RRJ3_9BACT (D-3-phosphoglycerate dehydrogenase (Fragment) n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0RRJ3_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 3.620e-15
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 ILRRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGFE 156
            + RR+P+A+ S++ GKWERKKF+G+EL+GKTL +VG GRIGQ+VA  A+GFE
Sbjct:  111 LARRVPQANSSLRAGKWERKKFVGVELRGKTLGVVGLGRIGQVVASRARGFE 162
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BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A7R9U7T3_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7T3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.980e-15
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 ILRRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGF 153
            + R IP ADISMK GKWERK F G+E+ GKTLAIVGCGRIG +VA+W +  
Sbjct:  138 VARSIPAADISMKAGKWERKAFSGVEISGKTLAIVGCGRIGLVVAKWCKAL 188
[Close]
BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: A0A0B6WXV8_9BACT (D-3-phosphoglycerate dehydrogenase n=1 Tax=Pyrinomonas methylaliphatogenes TaxID=454194 RepID=A0A0B6WXV8_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 6.790e-15
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 ILRRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGFE 156
            + RRIP+A  S+K G+WERKKF+G EL+GKTL I+G GRIG++VA  AQGFE
Sbjct:  114 LARRIPQAHASLKAGRWERKKFVGTELRGKTLGIIGLGRIGRVVASRAQGFE 165
[Close]
BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Match: UPI0019C6E186 (Phosphoglycerate dehydrogenase n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=UPI0019C6E186)

HSP 1 Score: 75.9 bits (185), Expect = 9.270e-15
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 ILRRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQGFE 156
            + RR+P+ D S+K G+WERKKF+G+EL+GKTL +VG GRIG++VA  A+GFE
Sbjct:  114 LARRVPQGDASLKSGRWERKKFVGVELRGKTLGVVGLGRIGRVVASRARGFE 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143210.2984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ0_ECTSI6.930e-2390.00D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocar... [more]
A0A835Z0M8_9STRA5.840e-1981.63D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribone... [more]
A0A6U4F3N0_9STRA7.660e-1678.26D-3-phosphoglycerate dehydrogenase n=1 Tax=Phaeomo... [more]
W7T1C1_9STRA1.400e-1568.00D-3-phosphoglycerate dehydrogenase n=2 Tax=Nannoch... [more]
A0A4D9D253_9STRA1.430e-1568.00D-3-phosphoglycerate dehydrogenase n=1 Tax=Nannoch... [more]
A0A7S2V587_9STRA2.550e-1574.47Phosphoglycerate dehydrogenase n=1 Tax=Fibrocapsa ... [more]
A0A7W0RRJ3_9BACT3.620e-1563.46D-3-phosphoglycerate dehydrogenase (Fragment) n=1 ... [more]
A0A7R9U7T3_9STRA4.980e-1566.67D-3-phosphoglycerate dehydrogenase n=1 Tax=Pinguio... [more]
A0A0B6WXV8_9BACT6.790e-1565.38D-3-phosphoglycerate dehydrogenase n=1 Tax=Pyrinom... [more]
UPI0019C6E1869.270e-1561.54Phosphoglycerate dehydrogenase n=1 Tax=Rubrivivax ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143210contigH-elongata_contig143210:405..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2880.D7FJJ0
Preferred namePHGDH
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004617,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006541,GO:0006544,GO:0006563,GO:0006564,GO:0006566,GO:0006790,GO:0006805,GO:0006807,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008652,GO:0009055,GO:0009058,GO:0009064,GO:0009066,GO:0009069,GO:0009070,GO:0009410,GO:0009448,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010001,GO:0010468,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0019222,GO:0019530,GO:0019694,GO:0019752,GO:0021510,GO:0021782,GO:0021915,GO:0022008,GO:0022402,GO:0022900,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032787,GO:0035295,GO:0042063,GO:0042133,GO:0042221,GO:0043009,GO:0043209,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051716,GO:0055114,GO:0060255,GO:0060322,GO:0060429,GO:0065007,GO:0065008,GO:0070314,GO:0070887,GO:0071466,GO:0071704,GO:0071840,GO:0120036,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.phosphoglycerate dehydrogenase activity
EggNOG OGsCOG0111@1,KOG0068@2759
EC1.1.1.399,1.1.1.95
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.0343282-CDS-H-elongata_contig143210:404..5631622929850.0343282-CDS-H-elongata_contig143210:404..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143210 405..563 -
1691679182.6114752-CDS-H-elongata_contig143210:404..5631691679182.6114752-CDS-H-elongata_contig143210:404..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143210 405..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143210.2984.1prot_H-elongata_contig143210.2984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143210 405..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143210.2984.1

>prot_H-elongata_contig143210.2984.1 ID=prot_H-elongata_contig143210.2984.1|Name=mRNA_H-elongata_contig143210.2984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
ILRRIPEADISMKLGKWERKKFMGLELKGKTLAIVGCGRIGQMVAQWAQG
FE*
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mRNA from alignment at H-elongata_contig143210:405..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143210.2984.1 ID=mRNA_H-elongata_contig143210.2984.1|Name=mRNA_H-elongata_contig143210.2984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig143210:405..563- (Himanthalia elongata Himel1 dioecious)
ATTCTAAGGAGAATCCCAGAGGCGGACATCTCCATGAAGCTGGGCAAGTG
GGAGAGGAAGAAGTTTATGGGCCTCGAGCTCAAGGGGAAGACGCTGGCAA
TCGTGGGCTGCGGGCGGATCGGGCAGATGGTGGCGCAGTGGGCCCAGGGC
TTCGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig143210:405..563-

>mRNA_H-elongata_contig143210.2984.1 ID=mRNA_H-elongata_contig143210.2984.1|Name=mRNA_H-elongata_contig143210.2984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig143210:405..563- (Himanthalia elongata Himel1 dioecious)
ATTCTAAGGAGAATCCCAGAGGCGGACATCTCCATGAAGCTGGGCAAGTG
GGAGAGGAAGAAGTTTATGGGCCTCGAGCTCAAGGGGAAGACGCTGGCAA
TCGTGGGCTGCGGGCGGATCGGGCAGATGGTGGCGCAGTGGGCCCAGGGC
TTCGAGTGAATTCTAAGGAGAATCCCAGAGGCGGACATCTCCATGAAGCT
GGGCAAGTGGGAGAGGAAGAAGTTTATGGGCCTCGAGCTCAAGGGGAAGA
CGCTGGCAATCGTGGGCTGCGGGCGGATCGGGCAGATGGTGGCGCAGTGG
GCCCAGGGCTTCGAGTGA
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