prot_H-elongata_contig14311.2977.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14311.2977.1
Unique Nameprot_H-elongata_contig14311.2977.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length889
Homology
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Match: A0A6H5KDH3_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH3_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 5.380e-114
Identity = 353/960 (36.77%), Postives = 470/960 (48.96%), Query Frame = 0
Query:    1 DICHSRVQRRVGHPTLPPGPASADVVTRMAQNLRPPCRDEGFHDVLHCRRERDLSEAVAVLSFSPGAWEPSRKIADGGAGLMESAWKDPSTAHSS--------------------LASTAAAPLHGQQLSVQN--ESEINTAAAAASWHSTT--LEMMEAEALNSGRGKVMVSAAGRGGRRGGHRVQPRAASHRRSQRPPRDWA---SSGGMNSWRKSARAPFGGGHHPEQAAVIGRATDGVFAD----SEDFSSFPAVSSTGIG---GSYPGGTGRAFPPPPEELRANGSTRAGTIPAAVLRDQPPRAKAS-----KPEP--LTPAGFVADCAARESPSEVAEXXXXXXXXLAASGSPWKISGSTGLAAFSMGSQE------RLTVLPLRDLEISTPRSNATAMADPHEYEGNT-------EVPGSRESIVVADPRSRGGSGSVESQRAAAVKELETSTGGNDPDLSDGEAFLVLEDMFGGLLCYDALGDVYVESGHNLEESVRLAFKLCQEMWDHKEISTERSSFSGSMASDAVTADTSADATSSA--DCSSIGEGDGFEVCDERNQLADVSDWTHEQVDVLTELCLAFEER-PREQVVAALVSANHDPEHAAHILFETSEDLPLRASI--ITAPHGGGNKRRRGTGRRGQMCATQLPVSTASNLLGVTCGDRSRLGKGRD---SEEGAAGVAWEGEIEEEGDEWLTSEEYRARANAAAEEMTTWFQRAAEAFTRGGKKRNGGAAAIHPSEQGHRCRRKMETLNLRAAREAFRERNPSVKVGCTTDGRSVLKVLALPEPSECPTRGQLSVDLHLLRKMEAVGVLEAVLDALRPRRAGKE---LESRPPIPRSQTDTPTLDSTKNYIDAVHSLAAVYEP-YPGRVKTGTSSAATN-------VHKEGFSYLEVIVGRGSHSKRGVGRLRPVVAKYLTDRGFKAKAVKGERGAGVFLVRL 887
            D+C  RVQ RVGHPTL  G ASA +V R A++ RPP R EGFH VL C  ++DLSEA+A+LS S G+        DG  G   +     +TA S                     +    +    G Q ++ +    E+   A A + H        +E  A  +G    +  AA     +GG      A++     RP  D     + GG            GGG     A  + R  D V  +    + D +S P++ S   G   G + G   +  P  P++ R   S+   +I A +       A AS     KP+   LTPA   ++ +  ++P  V          +AAS    ++   TG  A + G ++      +  VLPL    I    S +T     +E  GNT       E   + E     D R R  +G+ +       +E        D D+SDGEAF VLEDMFGGLL  + L +++ ESG+ LE++V+  FK+C+ +W   E+ T    F  S +SD  T D     ++SA  D S+   G      +   + ADV  WT +QVD LTELCLAFE    RE ++AAL +++HD   AA +L +     P        + PH G  +R R    R       LP +T+   LG TCG   R G   +    EE A G          GDE LTSEEYR RANAAAE+M  WFQ+AAEAF RGG  RNGGAAA  PS  G R ++ MET NLRAAREAFRERNP ++VG T DG SVLKVL LPEPS+C T GQLSVDLHLLR+ EA+ VLE VL A+R RRAG+    L +RP  P+           K + D V + A   EP Y G   T   +           +  + F+ LEV+VGRG+HS  GV RLRP V  YL  +GF+A+ V+G+RG GV +V L
Sbjct:  127 DVCQGRVQSRVGHPTLGAGLASAGIVKRYAKDFRPPHRKEGFHTVLRCHGDQDLSEAIALLSLSAGS--------DGAPGTERAPAPPATTAGSDRVGGDLGGGTGWRRGVDSVGMCWDQSLAEEGSQWNMNSCPPGEVGAVATAPTVHHAVDIFFPVEKGATTAGMATKLPGAAPG---QGGVTYHTPASADAPMTRPEYDRGPVLACGGQQQ--------VGGGG---AAGPVARTRDAVGNNGRTAANDATSDPSLPSAMNGDKRGRFVGSLEKQLPHRPKQ-RGFTSSSLNSI-AKLTSQSQAEALASVKQSLKPKTRLLTPAEICSNFSDLQAPPRV---LAPEDVGVAASARTDRLG--TGPTAAATGKRDEDHSCAQPVVLPLGPNSIEEWPSRSTFPIQGNEENGNTGNSSYRSEEAATAEGGQAHDHRERVPAGAWDGDDQTNEEEA-------DLDVSDGEAFFVLEDMFGGLLPPETLENLFAESGNYLEKAVKEGFKVCEGLWGQGEVIT----FPDSPSSDGTTTDDFLTPSTSAGTDVSTNENGSDTRDDETHGKFADVLHWTPKQVDTLTELCLAFEATISRETIIAALTASDHDATSAAQLLLDPRPANPRERGEGRRSRPHRGVAQRERKA--RPPRSDDSLPTATS---LGATCGVDHRAGALSERQWEEEDAEGXXXXXXXXXXGDEGLTSEEYRTRANAAAEQMKAWFQKAAEAFIRGG--RNGGAAAADPSRIGQRWKKSMETANLRAAREAFRERNPLIRVGHTHDGVSVLKVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIR-RRAGEHSRVLVNRPRAPKQS------QQLKEHPDVVAAAAGQTEPSYSGASYTPPVAQQGEGLQHDRVIRVQKFASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEGVEGDRGKGVVVVGL 1032          
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Match: D7FMH4_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH4_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 1.220e-96
Identity = 236/498 (47.39%), Postives = 291/498 (58.43%), Query Frame = 0
Query:  410 DPDLSDGEAFLVLEDMFGGLLCYDALGDVYVESGHNLEESVRLAFKLCQEMWDHKEISTERSSFSGSMASDAVTADTSADATSSADCSSIGEGDGFEVCDERN--QLADVSDWTHEQVDVLTELCLAFEER-PREQVVAALVSANHDPEHAAHILFETSEDLPLRASIITAPHGGGNKRRR--GTGRRGQMCATQ-----LPVSTASNLLGVTCGDRSR---LGKGRDSEEGAAGVAWEGEIEEEGDEWLTSEEYRARANAAAEEMTTWFQRAAEAFTRGGKKRNGGAAAIHPSEQGHRCRRKMETLNLRAAREAFRERNPSVKVGCTTDGRSVLKVLALPEPSECPTRGQLSVDLHLLRKMEAVGVLEAVLDALRPRRAGKELE-----SRPPIPRSQ-TDTPTLDSTKNYIDAVHSLAAVYEPYPGRVKTGTS-SAATNVHKEGFSYLEVIVGRGSHSKRGVGRLRPVVAKYLTDRGFKAKAVKGERGAGVFLVRL 887
            D D+SDGEAF VLEDMFGGLL  + L +++ ESG  LE++V+  FK+C+ +W   E  T    F  S +SD  T D     ++SA        +G E  D+    + ADVS WTH+QVD LTELCLAFE    RE ++AAL ++NHD   AA +L +     P          G G + RR  G  +R +          LP +T   LLG TCG   R   LG+    EE A G          GDE LTSEEYR RANAAAE M  WFQ+AAEAFTRGG  RNGGAAA  PS  G R ++ MET NLRAAREAFRERNP ++VG T DG +VLKVL LPEPS+C T GQLSVDLHLLR+ EA+ VLE VL A+R RRAG+         R P P  Q  + P + +         S  A Y P   +   G       +V K  F+ LEV+VGRG+HS  GV RLRP V  YL  +GF+A+AV+G++G GV +V L
Sbjct:  462 DLDVSDGEAFFVLEDMFGGLLPPETLENLFAESGKYLEKAVKEGFKVCEGLWGQGEAIT----FPNSPSSDGSTTDDFLTPSTSAGTDVSTNENGSESWDDETHGEFADVSHWTHKQVDTLTELCLAFEATISRETIIAALTASNHDATSAAQLLLDPGPANPRE-------RGEGRRSRRYGGVAQRERKARPPRYDGCLPTAT---LLGATCGVDHRAGALGERGWEEEDAEGXXXXXXX---GDEGLTSEEYRTRANAAAELMKAWFQKAAEAFTRGG--RNGGAAAADPSRIGQRWKKSMETANLRAAREAFRERNPLIRVGHTRDGVAVLKVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIR-RRAGEHTGVLVNGPRAPKPSQQHKEHPGVVAAPGGHTEPSSSGASYTPPAAQQGEGLQHDRVMSVLK--FASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEAVEGDKGKGVVVVGL 937          
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Match: A0A7S1CRB5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRB5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 0
Query:    1 DICHSRVQRRVGHPTLPPGPASADVVTRMAQNLRPPCRDEGFHDVLHCRRERDLSEAVAVLSFSPG 66
            D+C +R   RVGHPTLPP PA+  ++ R  +++ PP R EGF  V+  R   ++ EA A    S G
Sbjct:   93 DVCVARAMARVGHPTLPPSPATEGIIRRFHKDMVPPSRAEGFGAVVTLRSAEEV-EAFAAEFGSRG 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDH3_9PHAE5.380e-11436.77Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMH4_ECTSI1.220e-9647.39Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1CRB5_9STRA3.150e-542.42Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013899Domain of unknown function DUF1771SMARTSM01162DUF1771_2coord: 647..717
e-value: 3.7E-11
score: 53.1
IPR013899Domain of unknown function DUF1771PFAMPF08590DUF1771coord: 649..716
e-value: 1.5E-11
score: 44.5
IPR002625Smr domainSMARTSM00463SMR_2coord: 747..888
e-value: 7.0E-6
score: 35.5
IPR002625Smr domainPFAMPF01713Smrcoord: 750..887
e-value: 3.3E-14
score: 53.0
IPR002625Smr domainPROSITEPS50828SMRcoord: 750..888
score: 14.348
NoneNo IPR availableGENE3D3.30.1370.110coord: 818..887
e-value: 1.4E-8
score: 36.8
NoneNo IPR availablePANTHERPTHR46535FAMILY NOT NAMEDcoord: 831..886
coord: 633..769
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 832..887

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14311contigH-elongata_contig14311:1909..6603 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14311.2977.1mRNA_H-elongata_contig14311.2977.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14311 1909..6603 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14311.2977.1 ID=prot_H-elongata_contig14311.2977.1|Name=mRNA_H-elongata_contig14311.2977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=889bp
DICHSRVQRRVGHPTLPPGPASADVVTRMAQNLRPPCRDEGFHDVLHCRR
ERDLSEAVAVLSFSPGAWEPSRKIADGGAGLMESAWKDPSTAHSSLASTA
AAPLHGQQLSVQNESEINTAAAAASWHSTTLEMMEAEALNSGRGKVMVSA
AGRGGRRGGHRVQPRAASHRRSQRPPRDWASSGGMNSWRKSARAPFGGGH
HPEQAAVIGRATDGVFADSEDFSSFPAVSSTGIGGSYPGGTGRAFPPPPE
ELRANGSTRAGTIPAAVLRDQPPRAKASKPEPLTPAGFVADCAARESPSE
VAESPAQGAESLAASGSPWKISGSTGLAAFSMGSQERLTVLPLRDLEIST
PRSNATAMADPHEYEGNTEVPGSRESIVVADPRSRGGSGSVESQRAAAVK
ELETSTGGNDPDLSDGEAFLVLEDMFGGLLCYDALGDVYVESGHNLEESV
RLAFKLCQEMWDHKEISTERSSFSGSMASDAVTADTSADATSSADCSSIG
EGDGFEVCDERNQLADVSDWTHEQVDVLTELCLAFEERPREQVVAALVSA
NHDPEHAAHILFETSEDLPLRASIITAPHGGGNKRRRGTGRRGQMCATQL
PVSTASNLLGVTCGDRSRLGKGRDSEEGAAGVAWEGEIEEEGDEWLTSEE
YRARANAAAEEMTTWFQRAAEAFTRGGKKRNGGAAAIHPSEQGHRCRRKM
ETLNLRAAREAFRERNPSVKVGCTTDGRSVLKVLALPEPSECPTRGQLSV
DLHLLRKMEAVGVLEAVLDALRPRRAGKELESRPPIPRSQTDTPTLDSTK
NYIDAVHSLAAVYEPYPGRVKTGTSSAATNVHKEGFSYLEVIVGRGSHSK
RGVGRLRPVVAKYLTDRGFKAKAVKGERGAGVFLVRLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013899DUF1771
IPR002625Smr_dom
IPR036063Smr_dom_sf