mRNA_H-elongata_contig14311.2977.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14311.2977.1
Unique NamemRNA_H-elongata_contig14311.2977.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Match: A0A6H5KDH3_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH3_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 5.380e-114
Identity = 353/960 (36.77%), Postives = 470/960 (48.96%), Query Frame = 1 
Query:    1 DICHSRVQRRVGHPTLPPGPASADVVTRMAQNLRPPCRDEGFHDVLHCRRERDLSEAVAVLSFSPGAWEPSRKIADGGAGLMESAWKDPSTAHSS--------------------LASTAAAPLHGQQLSVQN--ESEINTAAAAASWHSTT--LEMMEAEALNSGRGKVMVSAAGRGGRRGGHRVQPRAASHRRSQRPPRDWA---SSGGMNSWRKSARAPFGGGHHPEQAAVIGRATDGVFAD----SEDFSSFPAVSSTGIG---GSYPGGTGRAFPPPPEELRANGSTRAGTIPAAVLRDQPPRAKAS-----KPEP--LTPAGFVADCAARESPSEVAEXXXXXXXXLAASGSPWKISGSTGLAAFSMGSQE------RLTVLPLRDLEISTPRSNATAMADPHEYEGNT-------EVPGSRESIVVADPRSRGGSGSVESQRAAAVKELETSTGGNDPDLSDGEAFLVLEDMFGGLLCYDALGDVYVESGHNLEESVRLAFKLCQEMWDHKEISTERSSFSGSMASDAVTADTSADATSSA--DCSSIGEGDGFEVCDERNQLADVSDWTHEQVDVLTELCLAFEER-PREQVVAALVSANHDPEHAAHILFETSEDLPLRASI--ITAPHGGGNKRRRGTGRRGQMCATQLPVSTASNLLGVTCGDRSRLGKGRD---SEEGAAGVAWEGEIEEEGDEWLTSEEYRARANAAAEEMTTWFQRAAEAFTRGGKKRNGGAAAIHPSEQGHRCRRKMETLNLRAAREAFRERNPSVKVGCTTDGRSVLKVLALPEPSECPTRGQLSVDLHLLRKMEAVGVLEAVLDALRPRRAGKE---LESRPPIPRSQTDTPTLDSTKNYIDAVHSLAAVYEP-YPGRVKTGTSSAATN-------VHKEGFSYLEVIVGRGSHSKRGVGRLRPVVAKYLTDRGFKAKAVKGERGAGVFLVRL 2661
            D+C  RVQ RVGHPTL  G ASA +V R A++ RPP R EGFH VL C  ++DLSEA+A+LS S G+        DG  G   +     +TA S                     +    +    G Q ++ +    E+   A A + H        +E  A  +G    +  AA     +GG      A++     RP  D     + GG            GGG     A  + R  D V  +    + D +S P++ S   G   G + G   +  P  P++ R   S+   +I A +       A AS     KP+   LTPA   ++ +  ++P  V          +AAS    ++   TG  A + G ++      +  VLPL    I    S +T     +E  GNT       E   + E     D R R  +G+ +       +E        D D+SDGEAF VLEDMFGGLL  + L +++ ESG+ LE++V+  FK+C+ +W   E+ T    F  S +SD  T D     ++SA  D S+   G      +   + ADV  WT +QVD LTELCLAFE    RE ++AAL +++HD   AA +L +     P        + PH G  +R R    R       LP +T+   LG TCG   R G   +    EE A G          GDE LTSEEYR RANAAAE+M  WFQ+AAEAF RGG  RNGGAAA  PS  G R ++ MET NLRAAREAFRERNP ++VG T DG SVLKVL LPEPS+C T GQLSVDLHLLR+ EA+ VLE VL A+R RRAG+    L +RP  P+           K + D V + A   EP Y G   T   +           +  + F+ LEV+VGRG+HS  GV RLRP V  YL  +GF+A+ V+G+RG GV +V L
Sbjct:  127 DVCQGRVQSRVGHPTLGAGLASAGIVKRYAKDFRPPHRKEGFHTVLRCHGDQDLSEAIALLSLSAGS--------DGAPGTERAPAPPATTAGSDRVGGDLGGGTGWRRGVDSVGMCWDQSLAEEGSQWNMNSCPPGEVGAVATAPTVHHAVDIFFPVEKGATTAGMATKLPGAAPG---QGGVTYHTPASADAPMTRPEYDRGPVLACGGQQQ--------VGGGG---AAGPVARTRDAVGNNGRTAANDATSDPSLPSAMNGDKRGRFVGSLEKQLPHRPKQ-RGFTSSSLNSI-AKLTSQSQAEALASVKQSLKPKTRLLTPAEICSNFSDLQAPPRV---LAPEDVGVAASARTDRLG--TGPTAAATGKRDEDHSCAQPVVLPLGPNSIEEWPSRSTFPIQGNEENGNTGNSSYRSEEAATAEGGQAHDHRERVPAGAWDGDDQTNEEEA-------DLDVSDGEAFFVLEDMFGGLLPPETLENLFAESGNYLEKAVKEGFKVCEGLWGQGEVIT----FPDSPSSDGTTTDDFLTPSTSAGTDVSTNENGSDTRDDETHGKFADVLHWTPKQVDTLTELCLAFEATISRETIIAALTASDHDATSAAQLLLDPRPANPRERGEGRRSRPHRGVAQRERKA--RPPRSDDSLPTATS---LGATCGVDHRAGALSERQWEEEDAEGXXXXXXXXXXGDEGLTSEEYRTRANAAAEQMKAWFQKAAEAFIRGG--RNGGAAAADPSRIGQRWKKSMETANLRAAREAFRERNPLIRVGHTHDGVSVLKVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIR-RRAGEHSRVLVNRPRAPKQS------QQLKEHPDVVAAAAGQTEPSYSGASYTPPVAQQGEGLQHDRVIRVQKFASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEGVEGDRGKGVVVVGL 1032
[Close]
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Match: D7FMH4_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH4_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 1.220e-96
Identity = 236/498 (47.39%), Postives = 291/498 (58.43%), Query Frame = 1 
Query: 1228 DPDLSDGEAFLVLEDMFGGLLCYDALGDVYVESGHNLEESVRLAFKLCQEMWDHKEISTERSSFSGSMASDAVTADTSADATSSADCSSIGEGDGFEVCDERN--QLADVSDWTHEQVDVLTELCLAFEER-PREQVVAALVSANHDPEHAAHILFETSEDLPLRASIITAPHGGGNKRRR--GTGRRGQMCATQ-----LPVSTASNLLGVTCGDRSR---LGKGRDSEEGAAGVAWEGEIEEEGDEWLTSEEYRARANAAAEEMTTWFQRAAEAFTRGGKKRNGGAAAIHPSEQGHRCRRKMETLNLRAAREAFRERNPSVKVGCTTDGRSVLKVLALPEPSECPTRGQLSVDLHLLRKMEAVGVLEAVLDALRPRRAGKELE-----SRPPIPRSQ-TDTPTLDSTKNYIDAVHSLAAVYEPYPGRVKTGTS-SAATNVHKEGFSYLEVIVGRGSHSKRGVGRLRPVVAKYLTDRGFKAKAVKGERGAGVFLVRL 2661
            D D+SDGEAF VLEDMFGGLL  + L +++ ESG  LE++V+  FK+C+ +W   E  T    F  S +SD  T D     ++SA        +G E  D+    + ADVS WTH+QVD LTELCLAFE    RE ++AAL ++NHD   AA +L +     P          G G + RR  G  +R +          LP +T   LLG TCG   R   LG+    EE A G          GDE LTSEEYR RANAAAE M  WFQ+AAEAFTRGG  RNGGAAA  PS  G R ++ MET NLRAAREAFRERNP ++VG T DG +VLKVL LPEPS+C T GQLSVDLHLLR+ EA+ VLE VL A+R RRAG+         R P P  Q  + P + +         S  A Y P   +   G       +V K  F+ LEV+VGRG+HS  GV RLRP V  YL  +GF+A+AV+G++G GV +V L
Sbjct:  462 DLDVSDGEAFFVLEDMFGGLLPPETLENLFAESGKYLEKAVKEGFKVCEGLWGQGEAIT----FPNSPSSDGSTTDDFLTPSTSAGTDVSTNENGSESWDDETHGEFADVSHWTHKQVDTLTELCLAFEATISRETIIAALTASNHDATSAAQLLLDPGPANPRE-------RGEGRRSRRYGGVAQRERKARPPRYDGCLPTAT---LLGATCGVDHRAGALGERGWEEEDAEGXXXXXXX---GDEGLTSEEYRTRANAAAELMKAWFQKAAEAFTRGG--RNGGAAAADPSRIGQRWKKSMETANLRAAREAFRERNPLIRVGHTRDGVAVLKVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIR-RRAGEHTGVLVNGPRAPKPSQQHKEHPGVVAAPGGHTEPSSSGASYTPPAAQQGEGLQHDRVMSVLK--FASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEAVEGDKGKGVVVVGL 937
[Close]
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Match: A0A7S1CRB5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRB5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 DICHSRVQRRVGHPTLPPGPASADVVTRMAQNLRPPCRDEGFHDVLHCRRERDLSEAVAVLSFSPG 198
            D+C +R   RVGHPTLPP PA+  ++ R  +++ PP R EGF  V+  R   ++ EA A    S G
Sbjct:   93 DVCVARAMARVGHPTLPPSPATEGIIRRFHKDMVPPSRAEGFGAVVTLRSAEEV-EAFAAEFGSRG 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14311.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDH3_9PHAE5.380e-11436.77Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMH4_ECTSI1.220e-9647.39Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1CRB5_9STRA3.150e-542.42Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14311contigH-elongata_contig14311:1909..6603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionALIX V-shaped and BRO1-like domain protein
Ec32 orthologEc-23_000310.1
Exons5
Model size2667
Cds size2667
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14311.2977.1prot_H-elongata_contig14311.2977.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14311 1909..6603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.383063-CDS-H-elongata_contig14311:1908..23791622929849.383063-CDS-H-elongata_contig14311:1908..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 1909..2379 -
1691679182.3582652-CDS-H-elongata_contig14311:1908..23791691679182.3582652-CDS-H-elongata_contig14311:1908..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 1909..2379 -
1622929849.3991687-CDS-H-elongata_contig14311:2859..30161622929849.3991687-CDS-H-elongata_contig14311:2859..3016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 2860..3016 -
1691679182.3682585-CDS-H-elongata_contig14311:2859..30161691679182.3682585-CDS-H-elongata_contig14311:2859..3016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 2860..3016 -
1622929849.4137423-CDS-H-elongata_contig14311:3349..38161622929849.4137423-CDS-H-elongata_contig14311:3349..3816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 3350..3816 -
1691679182.376453-CDS-H-elongata_contig14311:3349..38161691679182.376453-CDS-H-elongata_contig14311:3349..3816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 3350..3816 -
1622929849.4309685-CDS-H-elongata_contig14311:4456..46841622929849.4309685-CDS-H-elongata_contig14311:4456..4684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 4457..4684 -
1691679182.3857467-CDS-H-elongata_contig14311:4456..46841691679182.3857467-CDS-H-elongata_contig14311:4456..4684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 4457..4684 -
1622929849.4470022-CDS-H-elongata_contig14311:5259..66031622929849.4470022-CDS-H-elongata_contig14311:5259..6603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 5260..6603 -
1691679182.3934028-CDS-H-elongata_contig14311:5259..66031691679182.3934028-CDS-H-elongata_contig14311:5259..6603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14311 5260..6603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14311.2977.1

>prot_H-elongata_contig14311.2977.1 ID=prot_H-elongata_contig14311.2977.1|Name=mRNA_H-elongata_contig14311.2977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=889bp
DICHSRVQRRVGHPTLPPGPASADVVTRMAQNLRPPCRDEGFHDVLHCRR
ERDLSEAVAVLSFSPGAWEPSRKIADGGAGLMESAWKDPSTAHSSLASTA
AAPLHGQQLSVQNESEINTAAAAASWHSTTLEMMEAEALNSGRGKVMVSA
AGRGGRRGGHRVQPRAASHRRSQRPPRDWASSGGMNSWRKSARAPFGGGH
HPEQAAVIGRATDGVFADSEDFSSFPAVSSTGIGGSYPGGTGRAFPPPPE
ELRANGSTRAGTIPAAVLRDQPPRAKASKPEPLTPAGFVADCAARESPSE
VAESPAQGAESLAASGSPWKISGSTGLAAFSMGSQERLTVLPLRDLEIST
PRSNATAMADPHEYEGNTEVPGSRESIVVADPRSRGGSGSVESQRAAAVK
ELETSTGGNDPDLSDGEAFLVLEDMFGGLLCYDALGDVYVESGHNLEESV
RLAFKLCQEMWDHKEISTERSSFSGSMASDAVTADTSADATSSADCSSIG
EGDGFEVCDERNQLADVSDWTHEQVDVLTELCLAFEERPREQVVAALVSA
NHDPEHAAHILFETSEDLPLRASIITAPHGGGNKRRRGTGRRGQMCATQL
PVSTASNLLGVTCGDRSRLGKGRDSEEGAAGVAWEGEIEEEGDEWLTSEE
YRARANAAAEEMTTWFQRAAEAFTRGGKKRNGGAAAIHPSEQGHRCRRKM
ETLNLRAAREAFRERNPSVKVGCTTDGRSVLKVLALPEPSECPTRGQLSV
DLHLLRKMEAVGVLEAVLDALRPRRAGKELESRPPIPRSQTDTPTLDSTK
NYIDAVHSLAAVYEPYPGRVKTGTSSAATNVHKEGFSYLEVIVGRGSHSK
RGVGRLRPVVAKYLTDRGFKAKAVKGERGAGVFLVRLM*
back to top

mRNA from alignment at H-elongata_contig14311:1909..6603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14311.2977.1 ID=mRNA_H-elongata_contig14311.2977.1|Name=mRNA_H-elongata_contig14311.2977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4695bp|location=Sequence derived from alignment at H-elongata_contig14311:1909..6603- (Himanthalia elongata Himel1 dioecious)
GACATTTGTCACAGCAGAGTCCAGCGCAGGGTGGGCCACCCGACGCTCCC
TCCCGGCCCGGCGTCCGCCGACGTGGTCACCCGCATGGCACAAAACCTGC
GCCCGCCTTGCCGCGACGAGGGTTTTCACGACGTCCTTCACTGCAGGAGG
GAGCGAGACCTCTCCGAAGCCGTCGCGGTCTTGTCCTTCTCTCCGGGCGC
GTGGGAACCTTCGAGGAAGATCGCCGACGGTGGGGCGGGCCTGATGGAAA
GCGCGTGGAAAGACCCCTCGACAGCACATTCGTCTCTCGCGTCAACAGCG
GCTGCGCCTTTGCACGGTCAGCAGCTCTCCGTTCAAAACGAGAGCGAAAT
TAATACTGCTGCTGCTGCTGCCTCTTGGCATTCCACGACCCTTGAAATGA
TGGAGGCAGAAGCCTTGAACTCGGGACGAGGAAAGGTGATGGTTTCGGCG
GCCGGGAGAGGGGGGAGAAGGGGAGGTCATCGAGTGCAACCCCGTGCGGC
GTCTCATCGACGATCGCAGCGGCCTCCCCGCGATTGGGCCAGCAGTGGCG
GGATGAATTCGTGGCGAAAGAGTGCAAGGGCACCTTTCGGGGGCGGTCAT
CATCCCGAACAAGCAGCGGTAATAGGACGTGCGACCGACGGCGTATTCGC
AGACAGCGAGGACTTTTCTTCTTTCCCCGCGGTATCATCCACCGGAATTG
GTGGATCCTACCCGGGCGGCACCGGCCGTGCCTTTCCGCCGCCGCCCGAA
GAATTGAGGGCCAACGGATCGACTCGGGCCGGAACAATCCCTGCCGCGGT
GTTGCGTGATCAACCACCTCGGGCGAAGGCGTCAAAGCCAGAACCCCTGA
CTCCCGCAGGGTTTGTCGCAGATTGTGCGGCGCGAGAGTCGCCGTCCGAG
GTGGCCGAATCACCGGCGCAGGGTGCGGAATCGTTGGCGGCGTCCGGCAG
CCCTTGGAAGATATCCGGATCGACGGGATTGGCAGCGTTCAGCATGGGTT
CCCAGGAGAGGCTTACCGTTCTCCCGCTTCGCGACCTCGAAATATCGACG
CCTCGATCCAACGCCACAGCAATGGCTGACCCGCACGAGTACGAGGGCAA
TACTGAAGTACCTGGTAGCAGGGAGTCGATCGTCGTGGCTGATCCACGGT
CTCGAGGGGGTTCGGGAAGCGTCGAGTCCCAGCGTGCGGCGGCGGTAAAG
GAACTGGAGACATCGACTGGGGGAAATGATCCCGATCTCTCGGACGGGGA
GGCATTCCTTGTGCTCGAAGACATGTTTGGCGGCTTGCTGTGTTACGATG
CCCTTGGAGATGTTTATGTTGAATCCGGACACAATCTTGAGGAGGTGGGA
GCCAACATTCTTCGAAATAATGTTGGATTTTTGTTCGTTTAAATGTGGGC
ATTTATTGTGAGGCCATCTCGAATGATAAACCCCGCGGAACGGTAAAAAT
GGTGCTTGAGTTGCGAGAGGATGAATCTAAGCCGACCGGGGGAAACATGG
TAAACGAAAAAAAGGAAAATGCGAGGGTGAAGCGCAAATGTCTAGAAAAG
TGGTTGGCTCTGTAAATATAGAGAGTGCTACGGTTGCCGGCCTCGGAAAG
AAGACACGCGAGAGGGGTGCCCTATCCCTCTGTGATTCAGGCGGCGATGG
GGGTGAGGTCCACAAGCGATCTCTTTAAACCAATGCAACAGACTGAATTG
GAACATCCCTCCCCCGGTAATAGGAGATTATCGATTCACGCAGTTCGAAG
GAACACGCAGCCTGCACGTTGACAACGTGCGAGAAGATCGCTCTAATACT
CAAGTCACCGTGAGGCGCGCGCGAGACCAATCGTCGCTCCTCCCGATTAG
AAGTTTGCCACGAAGAGAATCACACCGACTCTACCCCTCCCGTGATAATG
TCACAAATTGTGTCCCCAGTCGGTGCGGCTAGCGTTCAAGCTGTGTCAAG
AAATGTGGGACCACAAGGAAATTTCCACGGAACGTTCTTCGTTCTCGGGC
AGCATGGCGTCGGATGCAGTCACCGCCGATACCTCTGCCGATGCCACCAG
CAGCGCCGACTGCAGCAGCATTGGTGAAGGCGATGGCTTCGAGGTCTGCG
ATGAGAGGAATCAGCTAGCAGACGTGTCGGACTGGACACATGAGCAGGTG
ATTTTGCGTGACGTCATCACATATATCAGAGTAGGGATCAACCAGATTTG
GCTGCCTCCTGCTTGAGATCAACTGAACATGAAAACATATTTTTTCCTGT
CCCCGTTCGCGCCTGAAAGTTTGGTCTCAGAGACGGGTCCGGCAGTCCCA
TCCCGCGTCAGCCCGCTCATTCTCTTAACCCAAGCTGATAAGGTGTGTTC
TCCCGAGATCCTCTCTATCCTCTCGTTTTTCGTGATGACATCCATCTCTA
CCGTCAACGGCCATCGGGCCAGTCCTGAGTTCATCAGGTCATGCAATTGC
GTACCGATGGCGTTTACTACCCAGAATCCGCTGACACTGATTTAGCAGTC
CTCAAGGTAGCTGGAGTAACGGGTGCAGCCTATTCAGGTAACCCCATGGA
CCAATGATTGTACTCCTCTTTGTAGGTGACCGATAATTCGGGGGCACGGG
GGGAAATATGGGATCCTGCAGGACCCCGACTGAACCGCACCTCCCTGTGC
GCCCCATGGGCGACCTGATTACGACAGTTGAGATTTACAGCCCCCAGGGA
TTATTCCTTCTCGTCATCAACCCACCATACTTTGCTCCCAACCCCTCCCC
ACCCCCTTTGAATGTTGACGCCTCAAACAACTTGAAGGTGGACGTGCTGA
CCGAGCTTTGCTTGGCGTTCGAGGAGAGACCCCGCGAACAGGTGGTGGCT
GCTCTGGTCTCCGCAAACCACGACCCGGAGCACGCGGCACATATCCTTTT
TGAGACCTCCGAAGACCTGCCCTTGCGAGCGAGCATCATTACTGCTCCGC
ACGGTGGGGGAAATAAACGACGGAGGGGGACTGGTCGTCGCGGTCAGATG
TGCGCCACCCAGCTGCCGGTATCAACCGCCTCGAATTTGCTGGGCGTGAC
GTGCGGCGATCGTTCTCGCCTTGGCAAAGGTAGAGATTCCGAGGAGGGGG
CTGCAGGGGTGGCGTGGGAGGGTGAAATCGAAGAGGAGGGAGATGAGTGG
CTGACGTCGGAGGAGTATCGAGCGCGCGCCAACGCCGCTGCGGAAGAAAT
GACGACTTGGTTCCAGAGAGCAGCGGAGGCGTTCACGAGAGGGGGTAAAA
AAAGGTTTGTGTTTGTATGCCGATGTCTTCGTTAGATTTTTGCGGAGCTA
TTCGAACGAACGAACAACTTTGTTTATTCCTCAGTTTCTAATTTACGCCA
AAGTGGCTGATGCTGTAGAAGATCGGAGCGAGCGCTTCGCCAAAGCCCCA
GAGGCTTTCCTCATTAAAAGTAGTACTTATTTTCCCGAGACATGCATGTC
GAGGTCTCGAGACAGCGGCGGCTCATGCGATTTTATCTGAGCCAGCATAT
CAAGTATGAGCCATCATATCAAGGGGGAACCGACCCCCTCCCCCCGCCCT
CCTCCTCCCCTTTTGGTTTTCTTCTAACGTCTCAAAGAAACGGGGGCGCG
GCGGCGATTCACCCGTCCGAACAAGGGCACCGCTGCAGGAGAAAGATGGA
GACTCTCAACCTCCGCGCGGCCAGGGAAGCGTTCCGGGAGAGGAATCCCT
CTGTGAAGGTCGGATGCACGACTGACGGGCGCTCGGTTCTAAAGGTGAGA
GTCCACCACGGGCACTCGATCGCGGGTAAGTGACGTCACTGTTGCCCTTG
TAGGGTAGGCAATCCAATTGTTACTCGAGACAGCGAGCGCCATTGTGTTT
GACCGCACTTCTATTTGTGTCCAACGGGTTTCACTTAAGTCCATAACCTG
GAGATATGTGTAGGATTATTAGATTTTTTCATGCGGTATGATCTCTCTCT
CGTGATCCGAGTAATCGCACCACGCGTCCCCGAATCGTCGGCGCGCAGAA
ACACGCCTCGTTAATTCTCCCCCTTGCTCGAGCGCGACCTGAATGTATCG
AGACACGGCAGGCTAGTTGGCCTACTACCGTACGTTGTAATCTAGCGGTG
TATCTAGCGGTGTGTCCTGACCGGTGGCTTATCTCGACGACAATTGGCCC
TCTCTAATCTGACCCTCTTATTTTTACCCTTCCTCAGCATGTTCCCTGTT
TCTCTCGAATCGACGCCATCGCAGGTGCTTGCCCTTCCCGAGCCATCGGA
GTGCCCGACCCGTGGCCAACTGTCGGTAGATTTGCATCTGCTGCGGAAGA
TGGAGGCAGTGGGCGTGCTCGAGGCCGTGCTAGACGCCCTTCGTCCCAGG
CGAGCGGGCAAGGAGCTCGAATCGCGACCGCCAATCCCTCGATCTCAGAC
TGATACTCCCACACTCGACTCTACCAAAAATTATATCGATGCAGTCCACT
CGTTAGCAGCGGTATATGAACCTTATCCGGGGAGGGTCAAAACAGGGACA
AGCTCGGCTGCTACCAACGTCCACAAGGAGGGGTTCTCTTACCTGGAGGT
GATCGTTGGGAGAGGGTCCCACAGCAAGCGAGGGGTTGGTCGACTCAGGC
CTGTTGTGGCGAAGTACTTGACCGACAGGGGTTTCAAAGCGAAGGCGGTG
AAGGGCGAAAGGGGAGCGGGGGTGTTTTTGGTTCGTCTGATGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14311:1909..6603-

>mRNA_H-elongata_contig14311.2977.1 ID=mRNA_H-elongata_contig14311.2977.1|Name=mRNA_H-elongata_contig14311.2977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5334bp|location=Sequence derived from alignment at H-elongata_contig14311:1909..6603- (Himanthalia elongata Himel1 dioecious)
GACATTTGTCACAGCAGAGTCCAGCGCAGGGTGGGCCACCCGACGCTCCC
TCCCGGCCCGGCGTCCGCCGACGTGGTCACCCGCATGGCACAAAACCTGC
GCCCGCCTTGCCGCGACGAGGGTTTTCACGACGTCCTTCACTGCAGGAGG
GAGCGAGACCTCTCCGAAGCCGTCGCGGTCTTGTCCTTCTCTCCGGGCGC
GTGGGAACCTTCGAGGAAGATCGCCGACGGTGGGGCGGGCCTGATGGAAA
GCGCGTGGAAAGACCCCTCGACAGCACATTCGTCTCTCGCGTCAACAGCG
GCTGCGCCTTTGCACGGTCAGCAGCTCTCCGTTCAAAACGAGAGCGAAAT
TAATACTGCTGCTGCTGCTGCCTCTTGGCATTCCACGACCCTTGAAATGA
TGGAGGCAGAAGCCTTGAACTCGGGACGAGGAAAGGTGATGGTTTCGGCG
GCCGGGAGAGGGGGGAGAAGGGGAGGTCATCGAGTGCAACCCCGTGCGGC
GTCTCATCGACGATCGCAGCGGCCTCCCCGCGATTGGGCCAGCAGTGGCG
GGATGAATTCGTGGCGAAAGAGTGCAAGGGCACCTTTCGGGGGCGGTCAT
CATCCCGAACAAGCAGCGGTAATAGGACGTGCGACCGACGGCGTATTCGC
AGACAGCGAGGACTTTTCTTCTTTCCCCGCGGTATCATCCACCGGAATTG
GTGGATCCTACCCGGGCGGCACCGGCCGTGCCTTTCCGCCGCCGCCCGAA
GAATTGAGGGCCAACGGATCGACTCGGGCCGGAACAATCCCTGCCGCGGT
GTTGCGTGATCAACCACCTCGGGCGAAGGCGTCAAAGCCAGAACCCCTGA
CTCCCGCAGGGTTTGTCGCAGATTGTGCGGCGCGAGAGTCGCCGTCCGAG
GTGGCCGAATCACCGGCGCAGGGTGCGGAATCGTTGGCGGCGTCCGGCAG
CCCTTGGAAGATATCCGGATCGACGGGATTGGCAGCGTTCAGCATGGGTT
CCCAGGAGAGGCTTACCGTTCTCCCGCTTCGCGACCTCGAAATATCGACG
CCTCGATCCAACGCCACAGCAATGGCTGACCCGCACGAGTACGAGGGCAA
TACTGAAGTACCTGGTAGCAGGGAGTCGATCGTCGTGGCTGATCCACGGT
CTCGAGGGGGTTCGGGAAGCGTCGAGTCCCAGCGTGCGGCGGCGGTAAAG
GAACTGGAGACATCGACTGGGGGAAATGATCCCGATCTCTCGGACGGGGA
GGCATTCCTTGTGCTCGAAGACATGTTTGGCGGCTTGCTGTGTTACGATG
CCCTTGGAGATGTTTATGTTGAATCCGGACACAATCTTGAGGAGGACATT
TGTCACAGCAGAGTCCAGCGCAGGGTGGGCCACCCGACGCTCCCTCCCGG
CCCGGCGTCCGCCGACGTGGTCACCCGCATGGCACAAAACCTGCGCCCGC
CTTGCCGCGACGAGGGTTTTCACGACGTCCTTCACTGCAGGAGGGAGCGA
GACCTCTCCGAAGCCGTCGCGGTCTTGTCCTTCTCTCCGGGCGCGTGGGA
ACCTTCGAGGAAGATCGCCGACGGTGGGGCGGGCCTGATGGAAAGCGCGT
GGAAAGACCCCTCGACAGCACATTCGTCTCTCGCGTCAACAGCGGCTGCG
CCTTTGCACGGTCAGCAGCTCTCCGTTCAAAACGAGAGCGAAATTAATAC
TGCTGCTGCTGCTGCCTCTTGGCATTCCACGACCCTTGAAATGATGGAGG
CAGAAGCCTTGAACTCGGGACGAGGAAAGGTGATGGTTTCGGCGGCCGGG
AGAGGGGGGAGAAGGGGAGGTCATCGAGTGCAACCCCGTGCGGCGTCTCA
TCGACGATCGCAGCGGCCTCCCCGCGATTGGGCCAGCAGTGGCGGGATGA
ATTCGTGGCGAAAGAGTGCAAGGGCACCTTTCGGGGGCGGTCATCATCCC
GAACAAGCAGCGGTAATAGGACGTGCGACCGACGGCGTATTCGCAGACAG
CGAGGACTTTTCTTCTTTCCCCGCGGTATCATCCACCGGAATTGGTGGAT
CCTACCCGGGCGGCACCGGCCGTGCCTTTCCGCCGCCGCCCGAAGAATTG
AGGGCCAACGGATCGACTCGGGCCGGAACAATCCCTGCCGCGGTGTTGCG
TGATCAACCACCTCGGGCGAAGGCGTCAAAGCCAGAACCCCTGACTCCCG
CAGGGTTTGTCGCAGATTGTGCGGCGCGAGAGTCGCCGTCCGAGGTGGCC
GAATCACCGGCGCAGGGTGCGGAATCGTTGGCGGCGTCCGGCAGCCCTTG
GAAGATATCCGGATCGACGGGATTGGCAGCGTTCAGCATGGGTTCCCAGG
AGAGGCTTACCGTTCTCCCGCTTCGCGACCTCGAAATATCGACGCCTCGA
TCCAACGCCACAGCAATGGCTGACCCGCACGAGTACGAGGGCAATACTGA
AGTACCTGGTAGCAGGGAGTCGATCGTCGTGGCTGATCCACGGTCTCGAG
GGGGTTCGGGAAGCGTCGAGTCCCAGCGTGCGGCGGCGGTAAAGGAACTG
GAGACATCGACTGGGGGAAATGATCCCGATCTCTCGGACGGGGAGGCATT
CCTTGTGCTCGAAGACATGTTTGGCGGCTTGCTGTGTTACGATGCCCTTG
GAGATGTTTATGTTGAATCCGGACACAATCTTGAGGAGTCGGTGCGGCTA
GCGTTCAAGCTGTGTCAAGAAATGTGGGACCACAAGGAAATTTCCACGGA
ACGTTCTTCGTTCTCGGGCAGCATGGCGTCGGATGCAGTCACCGCCGATA
CCTCTGCCGATGCCACCAGCAGCGCCGACTGCAGCAGCATTGGTGAAGGC
GATGGCTTCGAGGTCTGCGATGAGAGGAATCAGCTAGCAGACGTGTCGGA
CTGGACACATGAGCAGTCGGTGCGGCTAGCGTTCAAGCTGTGTCAAGAAA
TGTGGGACCACAAGGAAATTTCCACGGAACGTTCTTCGTTCTCGGGCAGC
ATGGCGTCGGATGCAGTCACCGCCGATACCTCTGCCGATGCCACCAGCAG
CGCCGACTGCAGCAGCATTGGTGAAGGCGATGGCTTCGAGGTCTGCGATG
AGAGGAATCAGCTAGCAGACGTGTCGGACTGGACACATGAGCAGGTGGAC
GTGCTGACCGAGCTTTGCTTGGCGTTCGAGGAGAGACCCCGCGAACAGGT
GGTGGCTGCTCTGGTCTCCGCAAACCACGACCCGGAGCACGCGGCACATA
TCCTTTTTGAGACCTCCGAAGACCTGCCCTTGCGAGCGAGCATCATTACT
GCTCCGCACGGTGGGGGAAATAAACGACGGAGGGGGACTGGTCGTCGCGG
TCAGATGTGCGCCACCCAGCTGCCGGTATCAACCGCCTCGAATTTGCTGG
GCGTGACGTGCGGCGATCGTTCTCGCCTTGGCAAAGGTAGAGATTCCGAG
GAGGGGGCTGCAGGGGTGGCGTGGGAGGGTGAAATCGAAGAGGAGGGAGA
TGAGTGGCTGACGTCGGAGGAGTATCGAGCGCGCGCCAACGCCGCTGCGG
AAGAAATGACGACTTGGTTCCAGAGAGCAGCGGAGGCGTTCACGAGAGGG
GGTAAAAAAAGGTGGACGTGCTGACCGAGCTTTGCTTGGCGTTCGAGGAG
AGACCCCGCGAACAGGTGGTGGCTGCTCTGGTCTCCGCAAACCACGACCC
GGAGCACGCGGCACATATCCTTTTTGAGACCTCCGAAGACCTGCCCTTGC
GAGCGAGCATCATTACTGCTCCGCACGGTGGGGGAAATAAACGACGGAGG
GGGACTGGTCGTCGCGGTCAGATGTGCGCCACCCAGCTGCCGGTATCAAC
CGCCTCGAATTTGCTGGGCGTGACGTGCGGCGATCGTTCTCGCCTTGGCA
AAGGTAGAGATTCCGAGGAGGGGGCTGCAGGGGTGGCGTGGGAGGGTGAA
ATCGAAGAGGAGGGAGATGAGTGGCTGACGTCGGAGGAGTATCGAGCGCG
CGCCAACGCCGCTGCGGAAGAAATGACGACTTGGTTCCAGAGAGCAGCGG
AGGCGTTCACGAGAGGGGGTAAAAAAAGAAACGGGGGCGCGGCGGCGATT
CACCCGTCCGAACAAGGGCACCGCTGCAGGAGAAAGATGGAGACTCTCAA
CCTCCGCGCGGCCAGGGAAGCGTTCCGGGAGAGGAATCCCTCTGTGAAGG
TCGGATGCACGACTGACGGGCGCTCGGTTCTAAAGAAACGGGGGCGCGGC
GGCGATTCACCCGTCCGAACAAGGGCACCGCTGCAGGAGAAAGATGGAGA
CTCTCAACCTCCGCGCGGCCAGGGAAGCGTTCCGGGAGAGGAATCCCTCT
GTGAAGGTCGGATGCACGACTGACGGGCGCTCGGTTCTAAAGGTGCTTGC
CCTTCCCGAGCCATCGGAGTGCCCGACCCGTGGCCAACTGTCGGTAGATT
TGCATCTGCTGCGGAAGATGGAGGCAGTGGGCGTGCTCGAGGCCGTGCTA
GACGCCCTTCGTCCCAGGCGAGCGGGCAAGGAGCTCGAATCGCGACCGCC
AATCCCTCGATCTCAGACTGATACTCCCACACTCGACTCTACCAAAAATT
ATATCGATGCAGTCCACTCGTTAGCAGCGGTATATGAACCTTATCCGGGG
AGGGTCAAAACAGGGACAAGCTCGGCTGCTACCAACGTCCACAAGGAGGG
GTTCTCTTACCTGGAGGTGATCGTTGGGAGAGGGTCCCACAGCAAGCGAG
GGGTTGGTCGACTCAGGCCTGTTGTGGCGAAGTACTTGACCGACAGGGGT
TTCAAAGCGAAGGCGGTGAAGGGCGAAAGGGGAGCGGGGGTGTTTTTGGT
TCGTCTGATGTAAGTGCTTGCCCTTCCCGAGCCATCGGAGTGCCCGACCC
GTGGCCAACTGTCGGTAGATTTGCATCTGCTGCGGAAGATGGAGGCAGTG
GGCGTGCTCGAGGCCGTGCTAGACGCCCTTCGTCCCAGGCGAGCGGGCAA
GGAGCTCGAATCGCGACCGCCAATCCCTCGATCTCAGACTGATACTCCCA
CACTCGACTCTACCAAAAATTATATCGATGCAGTCCACTCGTTAGCAGCG
GTATATGAACCTTATCCGGGGAGGGTCAAAACAGGGACAAGCTCGGCTGC
TACCAACGTCCACAAGGAGGGGTTCTCTTACCTGGAGGTGATCGTTGGGA
GAGGGTCCCACAGCAAGCGAGGGGTTGGTCGACTCAGGCCTGTTGTGGCG
AAGTACTTGACCGACAGGGGTTTCAAAGCGAAGGCGGTGAAGGGCGAAAG
GGGAGCGGGGGTGTTTTTGGTTCGTCTGATGTAA
back to top