mRNA_H-elongata_contig1431.2975.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Match: A0A6H5L721_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L721_9PHAE) HSP 1 Score: 374 bits (960), Expect = 1.340e-126 Identity = 182/230 (79.13%), Postives = 207/230 (90.00%), Query Frame = 1
Query: 55 SRLAPWYPAAGAVAVAVSLALLAKALAPPVHFLSTYNRNQMKDVFLGKGTWAVLCSGEGAGYDAVYKRFGTASSAMKGSVKFGVVDCSGSLPSGKNILQKFEMSEDIQPVLFVTGGAMTPVQASARNMDTHSSLLKWVQATATPGASPVKSTRDLESKCLKKERCAMIMKAGPLDDRARDAFKELMVRHRNLKFVSVDSAKLETSIEKKLGLKPFHGSHLLLYFTRYNVT 744
SRLAPWYPA A+ VAV+LA LAKALAPP+HFLSTYNRNQMKDVFLGKG W VLCSGEGAGYDAVYKRFGTAS AM GS KFGVVDC+GSLPSGK+ILQKF++SE+++PVLFVTG +TP QAS+RNM+TH+SLLKWVQ ATPGASPV STR+LESKCLKKERCA++MKAGPL+D +DAFK+LM HRNLKFVS+DS KLETS+EKKLG+KP GSH L++FTRYNVT
Sbjct: 18 SRLAPWYPAVVAMGVAVALAFLAKALAPPIHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDLSEEVKPVLFVTGAGLTPAQASSRNMETHASLLKWVQVMATPGASPVTSTRELESKCLKKERCALVMKAGPLEDDVKDAFKDLMGNHRNLKFVSIDSTKLETSLEKKLGIKPVDGSHQLVHFTRYNVT 247
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Match: D8LFH7_ECTSI (NIMA-like PK similar to Serine/threonine-protein kinase Nek1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH7_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.970e-57 Identity = 101/180 (56.11%), Postives = 129/180 (71.67%), Query Frame = 1
Query: 205 WAVLCSGEGAGYDAVYKRFGTASSAMKGSVKFGVVDCSGSLPSGKNILQKFEMSEDIQ-PVLFVTGGAMTPVQASARNMDTHSSLLKWVQATATPGASPVKSTRDLESKCLKKERCAMIMKAGPLDDRARDAFKELMVRHRNLKFVSVDSAKLETSIEKKLGLKPFHGSHLLLYFTRYNV 741
W VLC +G Y++ Y RF TAS + SVKFGVVDC GSLPSGK+I+QKF ++ + P+LFV G M PVQAS NMD+ +SL+KW TP ASPV STR LE+KC+KKE+C +IM AG L+ A KE+M RHR ++FVS+D+ KLETSIEK+ +KP G+H ++FTRYNV
Sbjct: 363 WVVLCKKKGPDYNSAYGRFETASRTLTESVKFGVVDCFGSLPSGKSIIQKFGLTNRLNTPILFVAGAEMKPVQASPWNMDSEASLVKWASIAITPAASPVTSTRSLETKCMKKEQCVLIMLAGQLESADDYALKEVMARHRKVRFVSMDATKLETSIEKRFDIKPVDGAHHFVHFTRYNV 542
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Match: A0A835ZG14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG14_9STRA) HSP 1 Score: 146 bits (369), Expect = 8.300e-38 Identity = 90/235 (38.30%), Postives = 131/235 (55.74%), Query Frame = 1
Query: 61 LAPWYPAAGAVAVAVSLALLAKALAPPVHFLSTYNRNQMKDVFLGKGTWAVLCSGEGAGYDAVYKRFGTASSAMKGSVKFGVVDCSGSLPSGKNILQKFEMSEDIQPVLFVT-GGAMTPVQASARNMDTHSSLLKWVQATATPGASPVKSTRDLESKCLKKERCAMIMKAGPLDDRARDAFKE----LMVRHRNLKFVSVDSAKLETSIEKKLGLKPF--HGSHLLLYFTRYNVT 744
L PW A ++ A + A + + ++ P+H+LS N +QM+ VFLG TW VLC A A++ TA + V FGV+DC G+LPSGK +L+KF + + P +F GA T QA AR + + + KWV+ T P + V +++DL +CL K+ C +++KA + A KE M RHR L+F + D+AK E S+E KLG G+H+ LYF NVT
Sbjct: 8 LEPWLKAMAVISAAFAAAYILRGVSQPLHYLSARNVDQMRAVFLGNETWVVLCHAGAAAVPALFDA--TARAPPSPGVAFGVLDCGGTLPSGKTVLEKFGIDVGVAPTVFAALPGARTTRQAPARALASRAHFAKWVRDTVEPHSFAVATSKDLLERCLVKDECCLVLKAAGGGEGMGGAEKEGVRAAMYRHRGLRFAAADAAKHELSLEAKLGFGDALEAGNHVALYFR--NVT 238
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Match: A0A7S2A9Q6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9Q6_TRICV) HSP 1 Score: 85.1 bits (209), Expect = 2.800e-15 Identity = 54/194 (27.84%), Postives = 102/194 (52.58%), Query Frame = 1
Query: 175 MKDVFLGKG---TWAVLCSGEGAGYDA----VYKRFGTASSAMKGSVKFGVVDCSGSLP-SGKNILQKFEMSEDIQPVLFVTGGAMTPVQASARNMDTHSSLLKWVQATATPGASPVKSTRDLESKCLKKERCAMIMKAGPLDDRARDAFKELMVRHRNLKFVSVDSAKLETSIEKKLGLKPFHGSHLLLYFTR 732
+++VF G+G +AVLC+ A + F A+ + F ++DC LP SGK + ++F ++ +P +FV+G P Q +++ T + L+K ++ P A +++T+DL+ KCL ++RC +++K G + ++A L+ +H ++ F SVDS L S ++ + G H + F +
Sbjct: 52 LREVFFGEGRGKNYAVLCNTLPADESKKPLPISSVFSDAAEDGSANADFVLLDCEHVLPDSGKTVAERFGINLKKRPTVFVSGKVGPPKQVPEKHLKTGNMLVKLLRQMLEPHAQKIENTKDLKVKCLNRDRCGLLLKGGKPEPYVKEAISNLLKKHPDVTFASVDSTVLLLSNLEEYLPEFVKGQHRFVVFEK 245
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Match: L1JA46_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JA46_GUITC) HSP 1 Score: 80.1 bits (196), Expect = 1.540e-13 Identity = 51/196 (26.02%), Postives = 100/196 (51.02%), Query Frame = 1
Query: 142 VHFLSTYNRNQMKDVFLGKGTWAVLCSGEGAGYDAVYKRFGTASSAM-KGSVKFGVVDCSGSLPSGKNILQKFEMSEDIQ-PVLFVTGGAMTPVQASARNMDTHSSLLKWVQATATPGASPVKSTRDLESKCLKKERCAMIMKAGPLDDRARDAFKELMVRHRNLKFVSVDSAKLETSIEKKLGLKPFHGSHLLLY 723
+ + T + + +VFL + V C+G + ++K F AS+ + + S+ +DC+G+LPSGK ++++F + + P+ F+ P + R+ T ++++ T S + + DL +CL++++CA+++ G + R L + R + FV VDS KL+ S+E L + +G L+Y
Sbjct: 109 IQTIETDDAAMVHEVFLSGNPYFVQCAGP---LEPLHKTFVDASAGLVESSITPAAMDCNGTLPSGKTVVERFFKGKKLHDPLFFIVANKRLPRSFTIRSHVTSDFVVQFAVNTTAVVVSNISNQEDLREECLRRKQCALVLHDGNYSGQERAVVLSLAPKFRGIAFVQVDSRKLQFSLEDALPVS--NGKPRLVY 299
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Match: A0A7S0TSR5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TSR5_HEMAN) HSP 1 Score: 68.2 bits (165), Expect = 1.350e-9 Identity = 52/182 (28.57%), Postives = 83/182 (45.60%), Query Frame = 1
Query: 163 NRNQMKDVFLGKGTWAVLCSGEGAGYDAVYKRFGTASSAMKGSVKFGVVDCSGSLPSGKNILQKFE---MSEDIQPV--LFVTGGAMTPVQASARNMDTHSSLLKWVQATATPGASPVKSTRDLESKCLKKERCAMI---MKAGPLDDRARDAFKELMVRHRNLKFVSVDSAKLETSIEKKL 684
N +Q+K VF G W + C +++ SS + G VK+GV+DCSG LPS K Q+F+ ++ PV LF GG P + + L W + + P + + CL ++ C M+ K P+D K++M HR + FVS++ +TS + K+
Sbjct: 87 NPDQLKKVFFGGEPWLLHCMNVNTTMALSFEKAAKKSS-VDGLVKYGVIDCSGKLPSNKTFFQRFKTPSVNFTKTPVAYLFANGGG--PDKVPDKIFADAKKLAAWAEKHSKPKVQELSWSSSFSKFCLHRDACVMLHAKAKYQPVD-----WMKDVMASHRGVPFVSINRKLHKTSFDDKV 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1431.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1431.2975.1 >prot_H-elongata_contig1431.2975.1 ID=prot_H-elongata_contig1431.2975.1|Name=mRNA_H-elongata_contig1431.2975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp ASPQAGKGSKRPPPPPPPSRLAPWYPAAGAVAVAVSLALLAKALAPPVHFback to top mRNA from alignment at H-elongata_contig1431:283..2730- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1431.2975.1 ID=mRNA_H-elongata_contig1431.2975.1|Name=mRNA_H-elongata_contig1431.2975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2448bp|location=Sequence derived from alignment at H-elongata_contig1431:283..2730- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1431:283..2730- >mRNA_H-elongata_contig1431.2975.1 ID=mRNA_H-elongata_contig1431.2975.1|Name=mRNA_H-elongata_contig1431.2975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig1431:283..2730- (Himanthalia elongata Himel1 dioecious)back to top |