mRNA_H-elongata_contig143079.2973.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143079.2973.1
Unique NamemRNA_H-elongata_contig143079.2973.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: D8LIF0_ECTSI (NAD(+) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIF0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.990e-20
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   16 GSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            GSSPYLTN+ECYCDE+HLTTVQADGLIIATPTGSTAYSMSAGGSMV
Sbjct:  409 GSSPYLTNLECYCDEEHLTTVQADGLIIATPTGSTAYSMSAGGSMV 454
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A7S0BNN1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNN1_9RHOD)

HSP 1 Score: 81.3 bits (199), Expect = 4.050e-17
Identity = 37/51 (72.55%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  GSSPYL+N++C+CDE+++TTVQADG+I++TPTGSTAYSMSAGGSMV
Sbjct:  129 VVIDRGSSPYLSNLDCFCDEKYITTVQADGIIMSTPTGSTAYSMSAGGSMV 179
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A7S2RIK7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIK7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.260e-17
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  G+SPYL N+EC+CD  HLTTVQADG+I ATPTGSTAYSM+AGGS+V
Sbjct:   60 VVIDRGASPYLANLECFCDNVHLTTVQADGIIFATPTGSTAYSMAAGGSVV 110
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A6T6C9C9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6C9C9_9RHOD)

HSP 1 Score: 81.3 bits (199), Expect = 1.060e-16
Identity = 36/46 (78.26%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:   16 GSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            GSSPYL+N++CYCD++++TTVQADG+I++TPTGSTAYSMSAGGSMV
Sbjct:  419 GSSPYLSNLDCYCDDKYITTVQADGIIMSTPTGSTAYSMSAGGSMV 464
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A7S1BK34_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BK34_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-16
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 GSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            GSS YL N+EC+CD  HLTTVQADGLI ATPTGSTAYSMSAGGS+V
Sbjct:   72 GSSAYLANLECFCDNVHLTTVQADGLIFATPTGSTAYSMSAGGSVV 117
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: B7FYY7_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYY7_PHATC)

HSP 1 Score: 77.8 bits (190), Expect = 3.630e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  GSSPYL  +EC+CD+ HLTTVQADG+I ATPTGSTAYSM+AGGS+V
Sbjct:   88 VVIDRGSSPYLAALECFCDDVHLTTVQADGIIFATPTGSTAYSMAAGGSVV 138
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: B8C4D1_THAPS (Inorganic polyphosphate/ATP-NAD kinase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4D1_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 3.910e-16
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  GSSPYL ++EC+CD+ HLTTVQADG+I +TPTGSTAYSM+AGGS+V
Sbjct:   92 VVIDRGSSPYLASLECFCDDVHLTTVQADGIIFSTPTGSTAYSMAAGGSVV 142
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A7S1DCH6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCH6_CYCTE)

HSP 1 Score: 79.0 bits (193), Expect = 4.400e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  G SPYL N+EC+CD+ HLTTVQADG+I ATPTGSTAYSM+AGGS+V
Sbjct:  196 VIIDRGGSPYLANLECFCDDVHLTTVQADGVIFATPTGSTAYSMAAGGSVV 246
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A7S4T0M5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0M5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.150e-16
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  GSSPYL N+EC+CD  HLTTVQADG+I++TPTGSTAYSM+AGGS+V
Sbjct:  463 VTIDRGSSPYLANLECFCDNVHLTTVQADGVILSTPTGSTAYSMAAGGSVV 513
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BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Match: A0A7S0AZR7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZR7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.530e-16
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 153
            V +  GSSPYL N+EC+CD+ HLTTVQADG+I +TP+GSTAYSMSAGGS+V
Sbjct:  296 VVIDRGSSPYLANLECFCDDVHLTTVQADGVIFSTPSGSTAYSMSAGGSVV 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143079.2973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF0_ECTSI1.990e-2095.65NAD(+) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7S0BNN1_9RHOD4.050e-1772.55Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2RIK7_9STRA8.260e-1772.55Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6T6C9C9_9RHOD1.060e-1678.26Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1BK34_9STRA1.300e-1682.61Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
B7FYY7_PHATC3.630e-1672.55Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
B8C4D1_THAPS3.910e-1670.59Inorganic polyphosphate/ATP-NAD kinase (Fragment) ... [more]
A0A7S1DCH6_CYCTE4.400e-1672.55Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4T0M5_9STRA5.150e-1672.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0AZR7_9STRA6.530e-1672.55Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143079contigH-elongata_contig143079:1228..1380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog2880.D8LIF0
KEGG rclassRC00002,RC00078
KEGG koko:K00858
KEGG ReactionR00104
KEGG Pathwayko00760,ko01100,map00760,map01100
EggNOG free text desc.NADP biosynthetic process
EggNOG OGsCOG0061@1,KOG2178@2759
EC2.7.1.23
COG Functional cat.G
BiGG ReactioniRC1080.CRv4_Au5_s7_g13893_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.823161-CDS-H-elongata_contig143079:1227..13801622929848.823161-CDS-H-elongata_contig143079:1227..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143079 1228..1380 +
1691679182.1303422-CDS-H-elongata_contig143079:1227..13801691679182.1303422-CDS-H-elongata_contig143079:1227..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143079 1228..1380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143079.2973.1prot_H-elongata_contig143079.2973.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143079 1228..1380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143079.2973.1

>prot_H-elongata_contig143079.2973.1 ID=prot_H-elongata_contig143079.2973.1|Name=mRNA_H-elongata_contig143079.2973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VCLTTGSSPYLTNMECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSM
V
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mRNA from alignment at H-elongata_contig143079:1228..1380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143079.2973.1 ID=mRNA_H-elongata_contig143079.2973.1|Name=mRNA_H-elongata_contig143079.2973.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig143079:1228..1380+ (Himanthalia elongata Himel1 dioecious)
GTCTGTCTCACGACAGGTTCGAGCCCGTATCTGACGAACATGGAGTGCTA
CTGCGACGAGCAGCACCTCACCACCGTCCAAGCGGACGGGCTCATCATCG
CTACCCCGACGGGATCCACGGCGTACAGCATGTCCGCCGGAGGCAGCATG
GTG
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Coding sequence (CDS) from alignment at H-elongata_contig143079:1228..1380+

>mRNA_H-elongata_contig143079.2973.1 ID=mRNA_H-elongata_contig143079.2973.1|Name=mRNA_H-elongata_contig143079.2973.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig143079:1228..1380+ (Himanthalia elongata Himel1 dioecious)
GTCTGTCTCACGACAGGTTCGAGCCCGTATCTGACGAACATGGAGTGCTA
CTGCGACGAGCAGCACCTCACCACCGTCCAAGCGGACGGGCTCATCATCG
CTACCCCGACGGGATCCACGGCGTACAGCATGTCCGCCGGAGGCAGCATG
GTGGTCTGTCTCACGACAGGTTCGAGCCCGTATCTGACGAACATGGAGTG
CTACTGCGACGAGCAGCACCTCACCACCGTCCAAGCGGACGGGCTCATCA
TCGCTACCCCGACGGGATCCACGGCGTACAGCATGTCCGCCGGAGGCAGC
ATGGTG
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