mRNA_H-elongata_contig143007.2970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143007.2970.1
Unique NamemRNA_H-elongata_contig143007.2970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143007.2970.1 vs. uniprot
Match: D7G4U9_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4U9_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 7.490e-61
Identity = 106/177 (59.89%), Postives = 134/177 (75.71%), Query Frame = 1 
Query:    1 GAAHHEKDQAYEEAAFLQTNRFVAAYVVDEHSRMSYVNDILNEGFHQPGEHADGGRDLYRACVGANTAIEEFLALIQDFDHEMQGLEKLRRDQVGNR---GGLDGTVAAPKIQRFCEGYIALVGRLIASRLMLELSPFMDSSVAGTPSAPISSSRKQLIATRRKLDEVYGFRRQLNI 522
            GAA H KD+AYEEA +L+TNRF+AAYVVDE SR SY+ND+LN+GFH  G+ A   RD + AC G+ +AI E LAL +DF  EM+G+E+LRR   G+    G LDG V APKI+RFCE Y++LVGR I+SRLMLELSPFM++SVAG+ SAP  S+R +L+ TRR+LDE Y    Q+ I
Sbjct:  119 GAAQHAKDEAYEEATYLKTNRFLAAYVVDEQSRASYINDLLNDGFHHVGDRAGSERDAHNACAGSRSAIAELLALTEDFMKEMRGVEELRRGTQGSETSEGQLDGAVTAPKIERFCEEYMSLVGRTISSRLMLELSPFMETSVAGSSSAPTESTRAELVGTRRRLDEAYAATEQVVI 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143007.2970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4U9_ECTSI7.490e-6159.89PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143007contigH-elongata_contig143007:248..1218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000260.1
Exons3
Model size522
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143007.2970.1prot_H-elongata_contig143007.2970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143007 248..1218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.5553215-CDS-H-elongata_contig143007:247..3881622929848.5553215-CDS-H-elongata_contig143007:247..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143007 248..388 +
1691679182.0396428-CDS-H-elongata_contig143007:247..3881691679182.0396428-CDS-H-elongata_contig143007:247..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143007 248..388 +
1622929848.5725708-CDS-H-elongata_contig143007:571..6761622929848.5725708-CDS-H-elongata_contig143007:571..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143007 572..676 +
1691679182.0488915-CDS-H-elongata_contig143007:571..6761691679182.0488915-CDS-H-elongata_contig143007:571..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143007 572..676 +
1622929848.591208-CDS-H-elongata_contig143007:942..12181622929848.591208-CDS-H-elongata_contig143007:942..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143007 943..1218 +
1691679182.0588956-CDS-H-elongata_contig143007:942..12181691679182.0588956-CDS-H-elongata_contig143007:942..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143007 943..1218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143007.2970.1

>prot_H-elongata_contig143007.2970.1 ID=prot_H-elongata_contig143007.2970.1|Name=mRNA_H-elongata_contig143007.2970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
GAAHHEKDQAYEEAAFLQTNRFVAAYVVDEHSRMSYVNDILNEGFHQPGE
HADGGRDLYRACVGANTAIEEFLALIQDFDHEMQGLEKLRRDQVGNRGGL
DGTVAAPKIQRFCEGYIALVGRLIASRLMLELSPFMDSSVAGTPSAPISS
SRKQLIATRRKLDEVYGFRRQLNI
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mRNA from alignment at H-elongata_contig143007:248..1218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143007.2970.1 ID=mRNA_H-elongata_contig143007.2970.1|Name=mRNA_H-elongata_contig143007.2970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig143007:248..1218+ (Himanthalia elongata Himel1 dioecious)
GGAGCGGCGCATCACGAAAAAGACCAAGCGTACGAAGAGGCGGCTTTCCT
CCAAACGAACCGATTCGTGGCGGCCTACGTCGTGGATGAGCATAGCAGGA
TGTCGTACGTCAACGACATCTTGAACGAGGGCTTTCATCAGGTACTTTGG
TTGCGCATCTCTCGTCGACCTCCAACCCCCAGTGCGGCGCGTTTCCCATT
CTAAAATTCGTTTATTGCGGGCTAGAAGCAACCAGAAGCCAGAAATCAGT
GACAGGCAGAAAATAATTCGGTGTACCGTTGAGCGACTTTCCGACACGGT
GCTTCCTTGACACTCGTTTCGCAGCCCGGAGAACATGCAGACGGTGGGCG
AGACCTGTACAGGGCGTGTGTAGGGGCGAATACCGCGATCGAGGAGTTTC
TGGCTTTGATCCAGGACTTCGACCATGAGGTGAGTGAGTCTTTACGCTAT
TCTAGACAAAAAATAATAATTGCTAGAGGAAGGCGTCATGAGCCACATAT
GCAATCGATGGGGTCGCGTTGGGTTCTGTGAGGCTGGCGTGTATTCCCTT
CGAGGACTTGCGACCTACCTCGAAACCCTTGGACCCCAGATAGAAACTGA
TTCACACATGGGTTTGTCTAAATATCTCGCCAACTGCACCCGCTATCCTC
AAAGTTTGGCTTACGAATCAAAATAGATTGCTTCTATCTCTGCAGATGCA
AGGACTGGAAAAGCTGCGTCGTGATCAAGTGGGCAACCGCGGCGGACTTG
ACGGTACCGTGGCTGCCCCAAAAATACAACGGTTCTGCGAGGGATATATC
GCACTCGTGGGTCGCCTGATCGCAAGCAGATTGATGTTGGAGCTGTCACC
GTTCATGGACTCGTCCGTGGCAGGAACGCCTTCCGCCCCAATAAGCTCTT
CTCGAAAACAGCTGATCGCCACAAGGCGGAAACTTGACGAGGTATATGGA
TTCCGTAGGCAGTTGAATATT
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Coding sequence (CDS) from alignment at H-elongata_contig143007:248..1218+

>mRNA_H-elongata_contig143007.2970.1 ID=mRNA_H-elongata_contig143007.2970.1|Name=mRNA_H-elongata_contig143007.2970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig143007:248..1218+ (Himanthalia elongata Himel1 dioecious)
GGAGCGGCGCATCACGAAAAAGACCAAGCGTACGAAGAGGCGGCTTTCCT
CCAAACGAACCGATTCGTGGCGGCCTACGTCGTGGATGAGCATAGCAGGA
TGTCGTACGTCAACGACATCTTGAACGAGGGCTTTCATCAGGGAGCGGCG
CATCACGAAAAAGACCAAGCGTACGAAGAGGCGGCTTTCCTCCAAACGAA
CCGATTCGTGGCGGCCTACGTCGTGGATGAGCATAGCAGGATGTCGTACG
TCAACGACATCTTGAACGAGGGCTTTCATCAGCCCGGAGAACATGCAGAC
GGTGGGCGAGACCTGTACAGGGCGTGTGTAGGGGCGAATACCGCGATCGA
GGAGTTTCTGGCTTTGATCCAGGACTTCGACCATGAGCCCGGAGAACATG
CAGACGGTGGGCGAGACCTGTACAGGGCGTGTGTAGGGGCGAATACCGCG
ATCGAGGAGTTTCTGGCTTTGATCCAGGACTTCGACCATGAGATGCAAGG
ACTGGAAAAGCTGCGTCGTGATCAAGTGGGCAACCGCGGCGGACTTGACG
GTACCGTGGCTGCCCCAAAAATACAACGGTTCTGCGAGGGATATATCGCA
CTCGTGGGTCGCCTGATCGCAAGCAGATTGATGTTGGAGCTGTCACCGTT
CATGGACTCGTCCGTGGCAGGAACGCCTTCCGCCCCAATAAGCTCTTCTC
GAAAACAGCTGATCGCCACAAGGCGGAAACTTGACGAGGTATATGGATTC
CGTAGGCAGTTGAATATTATGCAAGGACTGGAAAAGCTGCGTCGTGATCA
AGTGGGCAACCGCGGCGGACTTGACGGTACCGTGGCTGCCCCAAAAATAC
AACGGTTCTGCGAGGGATATATCGCACTCGTGGGTCGCCTGATCGCAAGC
AGATTGATGTTGGAGCTGTCACCGTTCATGGACTCGTCCGTGGCAGGAAC
GCCTTCCGCCCCAATAAGCTCTTCTCGAAAACAGCTGATCGCCACAAGGC
GGAAACTTGACGAGGTATATGGATTCCGTAGGCAGTTGAATATT
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