mRNA_H-elongata_contig142907.2967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142907.2967.1
Unique NamemRNA_H-elongata_contig142907.2967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A6H5KWE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE6_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 8.650e-30
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    4 KRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLSYK 213
            KRERL VS+ VL+LATKLLKELDGPNKLSGLSMNP+LYNVTR VLVSALSGVMSDTLGFSVKL+KV+S+K
Sbjct:  332 KRERLGVSTNVLKLATKLLKELDGPNKLSGLSMNPVLYNVTRVVLVSALSGVMSDTLGFSVKLWKVISFK 401
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: D8LCF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 5.180e-29
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    4 KRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLSYK 213
            KRERL VS+ VL+LATKLLKELDGPNKLSGLSMNP+LYNVTR VLVSALSGVMSDTLGFSVKL+KV+S+K
Sbjct:  721 KRERLGVSTNVLKLATKLLKELDGPNKLSGLSMNPVLYNVTRVVLVSALSGVMSDTLGFSVKLWKVISFK 790
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A1A6GXP7_NEOLE (Uncharacterized protein n=4 Tax=Amniota TaxID=32524 RepID=A0A1A6GXP7_NEOLE)

HSP 1 Score: 85.9 bits (211), Expect = 1.390e-20
Identity = 42/69 (60.87%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLS 207
            +K+E L + + VL+LATKLLKELD P +L GL+MNPLLYN+T+ V++SA+SGV+SD LGF++KL+K+ S
Sbjct:    6 NKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS 74
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A6P6JZT7_CARAU (putative homeodomain transcription factor 2 n=2 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6JZT7_CARAU)

HSP 1 Score: 85.9 bits (211), Expect = 1.390e-20
Identity = 42/69 (60.87%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLS 207
            +K+E L + + VL+LATKLLKELD P +L GL+MNPLLYN+T+ V++SA+SGV+SD LGF++KL+K+ S
Sbjct:    6 NKKEELTLVNNVLKLATKLLKELDAPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS 74
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A061ADE4_ONCMY (Uncharacterized protein (Fragment) n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A061ADE4_ONCMY)

HSP 1 Score: 85.1 bits (209), Expect = 5.090e-20
Identity = 42/69 (60.87%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLS 207
            +K+E L + + VL+LATKLLKELD P +L GL+MNPLLYN+T+ V++SA+SGV+SD LGF++KL+K+ S
Sbjct:   28 NKKEDLTLVNNVLKLATKLLKELDAPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS 96
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: UPI00077AD11E (putative homeodomain transcription factor 2 isoform X1 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AD11E)

HSP 1 Score: 84.3 bits (207), Expect = 5.660e-20
Identity = 40/66 (60.61%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    4 KRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKV 201
            K+E L +++ VL+LA+KLLKE++ P K+SGLSMNPLLYN+TR V++S  SGVMSD LGF +K++K+
Sbjct:    7 KKEDLTIANHVLKLASKLLKEIESPFKMSGLSMNPLLYNITRVVVLSLFSGVMSDLLGFRLKIWKI 72
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A1S3QH78_SALSA (putative homeodomain transcription factor 2 n=23 Tax=Salmoninae TaxID=504568 RepID=A0A1S3QH78_SALSA)

HSP 1 Score: 84.0 bits (206), Expect = 8.040e-20
Identity = 41/69 (59.42%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLS 207
            +K++ L + + VL+LATKLLKELD P +L GL+MNPLLYN+T+ V++SA+SGV+SD LGF++KL+K+ S
Sbjct:    6 NKKDDLTLVNNVLKLATKLLKELDAPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS 74
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: UPI001955E1D8 (protein PHTF2-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955E1D8)

HSP 1 Score: 85.9 bits (211), Expect = 8.560e-20
Identity = 42/69 (60.87%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLS 207
            +K+E L + + VL+LATKLLKELD P +L GL+MNPLLYN+T+ V++SA+SGV+SD LGF++KL+K+ S
Sbjct:   74 NKKEELTLVNNVLKLATKLLKELDAPFRLYGLTMNPLLYNITQVVILSAVSGVISDMLGFNLKLWKIKS 142
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A7S2R9Z1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9Z1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.800e-19
Identity = 43/69 (62.32%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    4 KRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLSY 210
            KRERLA+SSKVLELA KLLKE + PN++SGL+M+P++YNVTR +L SALS  MS+ +GF VK++K+  +
Sbjct:  665 KRERLAISSKVLELAIKLLKEFESPNQISGLAMDPVVYNVTRVILFSALSAAMSELMGFDVKMWKLKGF 733
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BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Match: A0A822GPI3_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822GPI3_9NEOB)

HSP 1 Score: 85.9 bits (211), Expect = 3.460e-19
Identity = 42/69 (60.87%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSALSGVMSDTLGFSVKLYKVLS 207
            +K+E L + + VL+LATKLLKELD P +L GL+MNPLLYN+T+ V++SA+SGV+SD LGF++KL+K+ S
Sbjct:  134 NKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142907.2967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWE6_9PHAE8.650e-3087.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCF4_ECTSI5.180e-2987.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1A6GXP7_NEOLE1.390e-2060.87Uncharacterized protein n=4 Tax=Amniota TaxID=3252... [more]
A0A6P6JZT7_CARAU1.390e-2060.87putative homeodomain transcription factor 2 n=2 Ta... [more]
A0A061ADE4_ONCMY5.090e-2060.87Uncharacterized protein (Fragment) n=1 Tax=Oncorhy... [more]
UPI00077AD11E5.660e-2060.61putative homeodomain transcription factor 2 isofor... [more]
A0A1S3QH78_SALSA8.040e-2059.42putative homeodomain transcription factor 2 n=23 T... [more]
UPI001955E1D88.560e-2060.87protein PHTF2-like n=1 Tax=Pimephales promelas Tax... [more]
A0A7S2R9Z1_9STRA2.800e-1962.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A822GPI3_9NEOB3.460e-1960.87(mimic poison frog) hypothetical protein n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142907contigH-elongata_contig142907:987..1202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D8LCF4
Preferred namePHTF1
GOsGO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.transcription, DNA-templated
EggNOG OGs28I6J@1,2QQGQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.3784676-CDS-H-elongata_contig142907:986..12021622929848.3784676-CDS-H-elongata_contig142907:986..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142907 987..1202 -
1691679181.9899864-CDS-H-elongata_contig142907:986..12021691679181.9899864-CDS-H-elongata_contig142907:986..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142907 987..1202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142907.2967.1prot_H-elongata_contig142907.2967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142907 987..1202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142907.2967.1

>prot_H-elongata_contig142907.2967.1 ID=prot_H-elongata_contig142907.2967.1|Name=mRNA_H-elongata_contig142907.2967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
SKRERLAVSSKVLELATKLLKELDGPNKLSGLSMNPLLYNVTRAVLVSAL
SGVMSDTLGFSVKLYKVLSYK*
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mRNA from alignment at H-elongata_contig142907:987..1202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142907.2967.1 ID=mRNA_H-elongata_contig142907.2967.1|Name=mRNA_H-elongata_contig142907.2967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig142907:987..1202- (Himanthalia elongata Himel1 dioecious)
AGCAAGCGGGAGCGCCTGGCGGTGTCAAGCAAGGTGCTCGAGCTGGCGAC
GAAGCTCCTCAAGGAGCTGGATGGGCCGAACAAGCTGTCGGGCCTCTCCA
TGAACCCTCTGCTGTACAACGTGACGAGAGCCGTCCTCGTGTCCGCCCTC
TCAGGGGTCATGAGCGACACGCTGGGCTTCAGCGTCAAGCTGTACAAGGT
CTTGTCGTATAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig142907:987..1202-

>mRNA_H-elongata_contig142907.2967.1 ID=mRNA_H-elongata_contig142907.2967.1|Name=mRNA_H-elongata_contig142907.2967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig142907:987..1202- (Himanthalia elongata Himel1 dioecious)
AGCAAGCGGGAGCGCCTGGCGGTGTCAAGCAAGGTGCTCGAGCTGGCGAC
GAAGCTCCTCAAGGAGCTGGATGGGCCGAACAAGCTGTCGGGCCTCTCCA
TGAACCCTCTGCTGTACAACGTGACGAGAGCCGTCCTCGTGTCCGCCCTC
TCAGGGGTCATGAGCGACACGCTGGGCTTCAGCGTCAAGCTGTACAAGGT
CTTGTCGTATAAGTAAAGCAAGCGGGAGCGCCTGGCGGTGTCAAGCAAGG
TGCTCGAGCTGGCGACGAAGCTCCTCAAGGAGCTGGATGGGCCGAACAAG
CTGTCGGGCCTCTCCATGAACCCTCTGCTGTACAACGTGACGAGAGCCGT
CCTCGTGTCCGCCCTCTCAGGGGTCATGAGCGACACGCTGGGCTTCAGCG
TCAAGCTGTACAAGGTCTTGTCGTATAAGTAA
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