mRNA_H-elongata_contig142874.2965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142874.2965.1
Unique NamemRNA_H-elongata_contig142874.2965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142874.2965.1 vs. uniprot
Match: D8LMT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMT5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.520e-43
Identity = 87/175 (49.71%), Postives = 106/175 (60.57%), Query Frame = 1 
Query:    1 VVMNSRSTMARLSPVAIMHAKSGGMGHRGGGIYTEACGCTYHVRDDARVVYFDDPVMSDVEAI-------TDLRCG-----------PLRRYLCGSRGQAVRVQSRACCGLCVRSRGL---PCIPSCCICLCKPGVLSYDLPVKDAVDAAAKIKQARDNALTRMWRENDAHAAVP 462
            VVM SR ++AR++     H         G G Y+ ACGCT+HVRDDARV+YFDDP + D+  +       +   CG             R+ LCG RGQAVRVQSR CCG CVR+RGL   PC+PSCC C C+   L YD+P KDAV AA KI  AR+NALT+M    +A AAVP
Sbjct:  269 VVMGSRPSVARVASADSAH---------GNGQYSGACGCTFHVRDDARVLYFDDPTLEDMTPVFPGGGGCSRFCCGRRPSTGARLMAEARQLLCGGRGQAVRVQSRVCCGACVRARGLLGLPCVPSCCACACRSATLRYDMPAKDAVTAATKIWHARNNALTKMREVGEAQAAVP 434
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142874.2965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMT5_ECTSI1.520e-4349.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142874contigH-elongata_contig142874:490..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_003590.1
Exons2
Model size477
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142874.2965.1prot_H-elongata_contig142874.2965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142874 496..1187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.2453349-UTR-H-elongata_contig142874:489..4951622929848.2453349-UTR-H-elongata_contig142874:489..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142874 490..495 +
1691679181.943996-UTR-H-elongata_contig142874:489..4951691679181.943996-UTR-H-elongata_contig142874:489..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142874 490..495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.258233-CDS-H-elongata_contig142874:495..8581622929848.258233-CDS-H-elongata_contig142874:495..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142874 496..858 +
1691679181.9520085-CDS-H-elongata_contig142874:495..8581691679181.9520085-CDS-H-elongata_contig142874:495..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142874 496..858 +
1622929848.2684066-CDS-H-elongata_contig142874:1079..11871622929848.2684066-CDS-H-elongata_contig142874:1079..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142874 1080..1187 +
1691679181.9603517-CDS-H-elongata_contig142874:1079..11871691679181.9603517-CDS-H-elongata_contig142874:1079..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142874 1080..1187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142874.2965.1

>prot_H-elongata_contig142874.2965.1 ID=prot_H-elongata_contig142874.2965.1|Name=mRNA_H-elongata_contig142874.2965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MNSRSTMARLSPVAIMHAKSGGMGHRGGGIYTEACGCTYHVRDDARVVYF
DDPVMSDVEAITDLRCGPLRRYLCGSRGQAVRVQSRACCGLCVRSRGLPC
IPSCCICLCKPGVLSYDLPVKDAVDAAAKIKQARDNALTRMWRENDAHAA
VPRPKG*
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mRNA from alignment at H-elongata_contig142874:490..1187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142874.2965.1 ID=mRNA_H-elongata_contig142874.2965.1|Name=mRNA_H-elongata_contig142874.2965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=698bp|location=Sequence derived from alignment at H-elongata_contig142874:490..1187+ (Himanthalia elongata Himel1 dioecious)
GTGGTTATGAACTCAAGATCCACGATGGCAAGGTTGTCACCGGTGGCCAT
CATGCACGCGAAGTCGGGCGGCATGGGACATAGAGGAGGGGGGATCTACA
CCGAAGCGTGCGGGTGCACGTACCACGTCCGCGACGATGCGCGCGTCGTT
TATTTTGACGACCCCGTTATGAGCGATGTCGAGGCGATCACCGACCTACG
TTGCGGCCCTCTGCGCCGTTATCTCTGCGGTAGCCGGGGCCAAGCGGTGC
GCGTTCAAAGCCGGGCTTGCTGCGGGCTGTGCGTGAGGTCGCGAGGTCTG
CCGTGCATCCCTAGCTGCTGTATATGCTTGTGCAAACCAGGCGTGCTAAG
CTATGACCTTCCGGTAAAGGTGAGTAGAGTCACGGCTACGATGCTCGTGG
GTTGTATCCGGAAAGTAATCCGGATCCGGCGTTACTTTTTCCGAGACTAA
CGAACAGCTACAGCTCCCTACTGAGCTCCTTCATTTTATGATTTAGCTTC
TATCCCACGCCTTTCCTGGCAACATGCATGATGGTTAATTTCTCTTTCTG
CACCCGCGACTGATTACGTCACAATGACATTTTTTTTCAGGACGCTGTCG
ACGCGGCCGCGAAGATAAAGCAAGCGCGCGACAATGCGCTGACTCGAATG
TGGCGCGAAAACGACGCCCACGCGGCCGTCCCTCGCCCGAAGGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig142874:490..1187+

>mRNA_H-elongata_contig142874.2965.1 ID=mRNA_H-elongata_contig142874.2965.1|Name=mRNA_H-elongata_contig142874.2965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig142874:490..1187+ (Himanthalia elongata Himel1 dioecious)
ATGAACTCAAGATCCACGATGGCAAGGTTGTCACCGGTGGCCATCATGCA
CGCGAAGTCGGGCGGCATGGGACATAGAGGAGGGGGGATCTACACCGAAG
CGTGCGGGTGCACGTACCACGTCCGCGACGATGCGCGCGTCGTTTATTTT
GACGACCCCGTTATGAGCGATGTCGAGGCGATCACCGACCTACGTTGCGG
CCCTCTGCGCCGTTATCTCTGCGGTAGCCGGGGCCAAGCGGTGCGCGTTC
AAAGCCGGGCTTGCTGCGGGCTGTGCGTGAGGTCGCGAGGTCTGCCGTGC
ATCCCTAGCTGCTGTATATGCTTGTGCAAACCAGGCGTGCTAAGCTATGA
CCTTCCGGTAAAGATGAACTCAAGATCCACGATGGCAAGGTTGTCACCGG
TGGCCATCATGCACGCGAAGTCGGGCGGCATGGGACATAGAGGAGGGGGG
ATCTACACCGAAGCGTGCGGGTGCACGTACCACGTCCGCGACGATGCGCG
CGTCGTTTATTTTGACGACCCCGTTATGAGCGATGTCGAGGCGATCACCG
ACCTACGTTGCGGCCCTCTGCGCCGTTATCTCTGCGGTAGCCGGGGCCAA
GCGGTGCGCGTTCAAAGCCGGGCTTGCTGCGGGCTGTGCGTGAGGTCGCG
AGGTCTGCCGTGCATCCCTAGCTGCTGTATATGCTTGTGCAAACCAGGCG
TGCTAAGCTATGACCTTCCGGTAAAGGACGCTGTCGACGCGGCCGCGAAG
ATAAAGCAAGCGCGCGACAATGCGCTGACTCGAATGTGGCGCGAAAACGA
CGCCCACGCGGCCGTCCCTCGCCCGAAGGGTTAGGACGCTGTCGACGCGG
CCGCGAAGATAAAGCAAGCGCGCGACAATGCGCTGACTCGAATGTGGCGC
GAAAACGACGCCCACGCGGCCGTCCCTCGCCCGAAGGGTTAG
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