mRNA_H-elongata_contig142780.2960.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142780.2960.1
Unique NamemRNA_H-elongata_contig142780.2960.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: D7G7I6_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I6_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 3.610e-47
Identity = 71/90 (78.89%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 QALELLEEGYSLRVTRVNLLEGEDSEKKIKQMKTFSGRNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY 270
            +AL LLE  YSL+VTRVN+LEGEDSEKKIKQMKTFSG NTVPQ+FFNS+H+GGNDD+QKLH++GKLE LV KVRAEAPG+M+ +WYHPWY
Sbjct:   82 KALALLENDYSLQVTRVNVLEGEDSEKKIKQMKTFSGANTVPQVFFNSEHLGGNDDVQKLHEDGKLEELVKKVRAEAPGMMKDSWYHPWY 171          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A835ZFR3_9STRA (Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.570e-32
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 QALELLEEGYSLRVTRVNLLEGEDSEKKIKQMKTFSG-RNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY 270
            + L LLE  Y+L V RVN+LEG+DS+KKIKQM+TFSG RNTVPQ+FFNS+H+GGNDD+Q LH EGKL  LV  + ++    ++  WYHPWY
Sbjct:   80 KVLHLLENEYNLSVNRVNVLEGDDSDKKIKQMRTFSGGRNTVPQVFFNSEHLGGNDDVQSLHSEGKLAELVETILSQDAS-LKAGWYHPWY 169          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A836CJB3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.790e-31
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 QALELLEEGYSLRVTRVNLLEGEDSEKKIKQMKTFSG-RNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY 270
            + LELLE  Y L VT+V++L GEDS+K +KQM+TFSG RNTVPQ+FFNS H+GGNDD+Q LH EG+LE LV  + +E P  ++  WYHPWY
Sbjct:   27 KVLELLEGDYGLEVTKVDVL-GEDSDKVLKQMRTFSGGRNTVPQVFFNSHHLGGNDDVQALHAEGELEKLVESILSE-PATLKKGWYHPWY 115          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A7S1U9K7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9K7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.630e-26
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 QALELLEEGYSLRVTRVNLLEGEDSE--KKIKQMKTFSG-RNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY 270
            +A ELLE+ Y   +T VN+ EG++ E  KKI+ M T+SG R TVPQIFFNS+HIGGNDD+Q LH +GKL+A++ +VR+  P  M+  WYHP Y
Sbjct:   44 KAKELLEDTYDAELTLVNIWEGDEDEQKKKIRSMTTYSGGRQTVPQIFFNSEHIGGNDDVQGLHADGKLQAMLDEVRS-TPATMRDGWYHPHY 135          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A7S1XU45_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU45_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.270e-26
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 QALELLEEGYSLRVTRVNLLEGEDSE--KKIKQMKTFSG-RNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY 270
            +A ELLE+ Y   +T VN+ EG++ E  KKI+ M T+SG R TVPQIFFNS+HIGGNDD+Q LH +GKL+A++ +VR+  P  M+  WYHP Y
Sbjct:   56 KAKELLEDTYDAELTLVNIWEGDEDEQKKKIRSMTTYSGGRQTVPQIFFNSEHIGGNDDVQGLHADGKLQAMLDEVRS-TPATMRDGWYHPHY 147          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A6S9FTA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FTA2_HETAK)

HSP 1 Score: 103 bits (256), Expect = 4.450e-26
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 QALELLEEGYSLRVTRVNLLEGEDSEKKIKQ--MKTFSGRNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY 270
            +A  LLE  Y L +T V++LEGE+ E+K KQ  MK FS R TVPQIFFNS H+GGNDD+Q LH+EG L ALVA + AE    +   WYHP Y
Sbjct:   68 EAKALLEGEYGLNLTVVDVLEGEEGEQKAKQRQMKQFSFRKTVPQIFFNSKHLGGNDDVQTLHREGALAALVAAMNAEGTPRLDEGWYHPHY 159          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A8EXS7_RICCK (Glutaredoxin n=2 Tax=Rickettsia canadensis TaxID=788 RepID=A8EXS7_RICCK)

HSP 1 Score: 60.1 bits (144), Expect = 8.940e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   76 EKKIKQMKTFSGRNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEAP 234
            E+K K +K   G  TVPQIF N+ HIGGNDDLQKL++EG+L+ L+     + P
Sbjct:   45 EEKEKLIKKAGGSRTVPQIFINNIHIGGNDDLQKLNEEGRLDKLLEGQPKKTP 97          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A0S7ESE5_9TELE (GLRX1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ESE5_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 3.340e-9
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   64 GEDSEKKIKQMKTFSGRNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAE 228
            G  SE ++K +K  +GR+TVPQIFFN  H+GGNDDLQKL  E +L+ LV  V+ E
Sbjct:   33 GLHSELRVK-LKELTGRSTVPQIFFNGIHVGGNDDLQKLATE-ELQRLVTLVKEE 85          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: UPI000D624899 (uncharacterized protein LOC107988205 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=UPI000D624899)

HSP 1 Score: 59.7 bits (143), Expect = 3.630e-9
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   94 MKTFSGRNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALVAKVRAEA 231
            +K  +GR+TVPQIFFNS H+GGNDDLQKL  E +L+ LV  VR EA
Sbjct:   61 VKELTGRSTVPQIFFNSVHVGGNDDLQKLAPE-ELQRLVRLVREEA 105          
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Match: A0A7X1IKS0_9ACTN (Glutaredoxin n=1 Tax=Streptomyces sp. TYQ1024 TaxID=2762559 RepID=A0A7X1IKS0_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 4.950e-9
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   49 VNLLEGEDSEKKIKQMKTFSGRNTVPQIFFNSDHIGGNDDLQKLHQEGKLEALV 210
            V L E ED ++   ++   + + TVP IF N  HIGGNDDLQKLHQ GKL  L+
Sbjct:   47 VELDEREDGDEIQDELHKMTKQRTVPNIFINQAHIGGNDDLQKLHQSGKLATLL 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142780.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7I6_ECTSI3.610e-4778.89Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835ZFR3_9STRA2.570e-3261.54Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836CJB3_9STRA1.790e-3161.54Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S1U9K7_9STRA1.630e-2655.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XU45_9STRA2.270e-2655.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6S9FTA2_HETAK4.450e-2657.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A8EXS7_RICCK8.940e-1052.83Glutaredoxin n=2 Tax=Rickettsia canadensis TaxID=7... [more]
A0A0S7ESE5_9TELE3.340e-956.36GLRX1 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
UPI000D6248993.630e-965.22uncharacterized protein LOC107988205 n=1 Tax=Cynog... [more]
A0A7X1IKS0_9ACTN4.950e-951.85Glutaredoxin n=1 Tax=Streptomyces sp. TYQ1024 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142780contigH-elongata_contig142780:889..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-02_000430.1
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.6812408-CDS-H-elongata_contig142780:888..10171622929847.6812408-CDS-H-elongata_contig142780:888..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142780 889..1017 +
1691679181.797263-CDS-H-elongata_contig142780:888..10171691679181.797263-CDS-H-elongata_contig142780:888..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142780 889..1017 +
1622929847.6940048-CDS-H-elongata_contig142780:1464..16081622929847.6940048-CDS-H-elongata_contig142780:1464..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142780 1465..1608 +
1691679181.8056114-CDS-H-elongata_contig142780:1464..16081691679181.8056114-CDS-H-elongata_contig142780:1464..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142780 1465..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142780.2960.1prot_H-elongata_contig142780.2960.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142780 889..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142780.2960.1

>prot_H-elongata_contig142780.2960.1 ID=prot_H-elongata_contig142780.2960.1|Name=mRNA_H-elongata_contig142780.2960.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
QALELLEEGYSLRVTRVNLLEGEDSEKKIKQMKTFSGRNTVPQIFFNSDH
IGGNDDLQKLHQEGKLEALVAKVRAEAPGVMQPTWYHPWY*
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mRNA from alignment at H-elongata_contig142780:889..1608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142780.2960.1 ID=mRNA_H-elongata_contig142780.2960.1|Name=mRNA_H-elongata_contig142780.2960.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig142780:889..1608+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTTGGAACTCCTTGAGGAGGGATACTCCCTGCGGGTGACGCGGGT AAACTTGCTGGAGGGAGAAGACAGCGAGAAAAAAATCAAGCAGATGAAGA CATTCAGTGGTCGCAATACCGTACCTCAGGTGCGAAACAGCGAGACACAG GTCACAGGTCTCCCTGCCTCGCCTCCGCAAGAGAGATCTGAAAGAGGATG ATTCCGCTTTGTTTCAGGCGTGTCAAAATATATTATGGCTTTCTGTCGCA CCCCCCAAACAAAAACAAGCCCGTGTGTCCTCGGAGCCTTATTTTTTGCA AATTTGAGAGACGAAGTCCGGGAGCCACTTGGGGCACACAGGTTTGACAA ATCAAAGTTATAAAATTCCGGCTTGAAAATCAAAATGAAGCCGCGGCGTT CCCAAAAGGCTAACCGACGTGTCCGCCTCGGGCGTTTGGAATGTAGCCCT GGTCCCGTTCATCCGATCTCCAGAAAATATTATCAGTTGTCCGCCGGCCG TCTACTTACTTTCTTTTTTGTTTTCGTTTAAAAAATAAACAACAAAAAAA ATGTTTGGCGTTTTTTTACGCCGCAGATATTCTTCAATTCTGATCACATC GGTGGTAACGACGACCTACAGAAGCTTCACCAGGAGGGAAAGCTTGAAGC TCTGGTCGCCAAGGTTCGCGCGGAGGCCCCTGGCGTGATGCAGCCCACTT GGTACCACCCCTGGTACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig142780:889..1608+

>mRNA_H-elongata_contig142780.2960.1 ID=mRNA_H-elongata_contig142780.2960.1|Name=mRNA_H-elongata_contig142780.2960.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig142780:889..1608+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTTGGAACTCCTTGAGGAGGGATACTCCCTGCGGGTGACGCGGGT
AAACTTGCTGGAGGGAGAAGACAGCGAGAAAAAAATCAAGCAGATGAAGA
CATTCAGTGGTCGCAATACCGTACCTCAGCAGGCGTTGGAACTCCTTGAG
GAGGGATACTCCCTGCGGGTGACGCGGGTAAACTTGCTGGAGGGAGAAGA
CAGCGAGAAAAAAATCAAGCAGATGAAGACATTCAGTGGTCGCAATACCG
TACCTCAGATATTCTTCAATTCTGATCACATCGGTGGTAACGACGACCTA
CAGAAGCTTCACCAGGAGGGAAAGCTTGAAGCTCTGGTCGCCAAGGTTCG
CGCGGAGGCCCCTGGCGTGATGCAGCCCACTTGGTACCACCCCTGGTACT
AGATATTCTTCAATTCTGATCACATCGGTGGTAACGACGACCTACAGAAG
CTTCACCAGGAGGGAAAGCTTGAAGCTCTGGTCGCCAAGGTTCGCGCGGA
GGCCCCTGGCGTGATGCAGCCCACTTGGTACCACCCCTGGTACTAG
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