mRNA_H-elongata_contig142776.2959.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142776.2959.1
Unique NamemRNA_H-elongata_contig142776.2959.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.860e-35
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 MASVASSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 237
            MAS A   AA V SK+Y+HK IE RWQ++WEEK TF+TPERTEG+PKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY
Sbjct:    3 MASAAPEAAAAVGSKLYNHKAIEARWQQHWEEKGTFKTPERTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 81
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A448Z2U8_9STRA (Leucine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2U8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.010e-28
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    7 SVASSDAAVVASKV-YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 237
            S A+ + + VA+K  Y  +E+E +WQ+YWEE  TF+TPER   KPKK+VLDMFPYPSG+GLHVGHPEGYTASDVMARY
Sbjct:   52 STATDEESTVAAKTGYPFQEVEPKWQKYWEENNTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMARY 129
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S0DTQ0_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTQ0_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 9.660e-28
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   49 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 249
            YD  E+E RWQ+ W +++TF TP R++ KPKK++LDMFPYPSGSGLHVGHPEGYTASDVMARY  +R
Sbjct:   97 YDPSEVEPRWQQRWADEKTFATPIRSQDKPKKYILDMFPYPSGSGLHVGHPEGYTASDVMARYYRMR 163
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S0LTP1_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTP1_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 1.690e-27
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:   49 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 249
            YDH  +EG+WQ YWEE RTF T  R EGK KK+VLDMFPYPSG+GLHVGHPEGYTASD+MARY  +R
Sbjct:   34 YDHAVVEGKWQAYWEESRTFAT-RRREGKEKKYVLDMFPYPSGAGLHVGHPEGYTASDIMARYWRMR 99
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S2V1U2_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.180e-27
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   16 SSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTE---------GKP-KKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 249
            +S   VV +K+YDH+ +E RWQ++WEE +TF+ P+RTE         G P KK+VLDMFPYPSGSGLHVGHPEGYTASD+MARY  +R
Sbjct:   88 TSPETVVPNKLYDHQTVEERWQQHWEENKTFKAPDRTEAVEKAGSTDGLPEKKYVLDMFPYPSGSGLHVGHPEGYTASDIMARYWRMR 175
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S4AJT1_9STRA (Leucine--tRNA ligase n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJT1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.230e-27
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    4 ASVASSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 237
            A V  S     A   Y   E+E +WQ+YWEE  TF+TPER   KPKK+VLDMFPYPSG+GLHVGHPEGYTASDVMARY
Sbjct:   52 ADVEESSTNTPAKTGYPFAEVEPKWQKYWEENNTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMARY 129
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S2YMF4_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMF4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.000e-27
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   49 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 237
            Y   E+E +WQ+YW++  TF+TPER   KPKK+VLDMFPYPSG+GLHVGHPEGYTASDVMARY
Sbjct:   70 YPFAEVEPKWQKYWKDNHTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMARY 132
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S0XJW0_9RHOD (Leucine--tRNA ligase (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJW0_9RHOD)

HSP 1 Score: 105 bits (263), Expect = 1.330e-26
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   49 YDHKEIEGRWQRYWEEKRTFRTPERTEG--KPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 249
            YDH ++E RWQ+YW+E  TFRTPE+ E   KPK +VLDMFPYPSG+GLHVGHPEGYTA+D++ARY  +R
Sbjct:   97 YDHLKVEQRWQQYWKENCTFRTPEKVEDETKPKYYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMR 165
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S4DRP5_9EUKA (Leucine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DRP5_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 2.860e-26
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   25 AAVVASKV--YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 249
            AA VA+++  YD  EIE RWQ+ W E++TF+TPER +GK K+++LDMFPYPSG+GLHVGHPEGYTASDVMARY  ++
Sbjct:   70 AAGVATELKRYDPAEIEPRWQKIWAEEKTFKTPERRDGKEKRYILDMFPYPSGAGLHVGHPEGYTASDVMARYYRMK 146
[Close]
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A8J6YRJ3_9BACL (Leucine--tRNA ligase (Fragment) n=2 Tax=Thermicanus TaxID=94008 RepID=A0A8J6YRJ3_9BACL)

HSP 1 Score: 101 bits (252), Expect = 3.820e-26
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   49 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 234
            + H+EIE +WQRYWEEK+ F+T E    KPK +VLDMFPYPSG+GLHVGHPEGYTA+D++AR
Sbjct:    3 FQHREIEKKWQRYWEEKKVFKTREEDRTKPKFYVLDMFPYPSGAGLHVGHPEGYTATDIIAR 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G858_ECTSI1.860e-3581.01Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A448Z2U8_9STRA5.010e-2867.95Leucine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S0DTQ0_9EUKA9.660e-2870.15Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0LTP1_9EUKA1.690e-2774.63Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2V1U2_9STRA4.180e-2761.36Leucine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4AJT1_9STRA8.230e-2766.67Leucine--tRNA ligase n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2YMF4_9STRA9.000e-2773.02Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S0XJW0_9RHOD1.330e-2668.12Leucine--tRNA ligase (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S4DRP5_9EUKA2.860e-2666.23Leucine--tRNA ligase n=1 Tax=Lotharella globosa Ta... [more]
A0A8J6YRJ3_9BACL3.820e-2669.35Leucine--tRNA ligase (Fragment) n=2 Tax=Thermicanu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142776contigH-elongata_contig142776:322..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.8
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog3067.XP_002948892.1
KEGG rclassRC00055,RC00523
KEGG koko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs34GSR@3041,37NXR@33090,COG0495@1,KOG0435@2759
EC6.1.1.4
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucyl-tRNA Synthetase
Ec32 orthologEc-12_001400.1
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.6353498-CDS-H-elongata_contig142776:321..5881622929847.6353498-CDS-H-elongata_contig142776:321..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142776 322..588 -
1691679181.7789109-CDS-H-elongata_contig142776:321..5881691679181.7789109-CDS-H-elongata_contig142776:321..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142776 322..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142776.2959.1prot_H-elongata_contig142776.2959.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142776 322..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142776.2959.1

>prot_H-elongata_contig142776.2959.1 ID=prot_H-elongata_contig142776.2959.1|Name=mRNA_H-elongata_contig142776.2959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MASVASSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFV
LDMFPYPSGSGLHVGHPEGYTASDVMARYLLLRILTLS*
back to top

mRNA from alignment at H-elongata_contig142776:322..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142776.2959.1 ID=mRNA_H-elongata_contig142776.2959.1|Name=mRNA_H-elongata_contig142776.2959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig142776:322..588- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGCGTCGCTTCCTCCGACGCAGCGGTGGTGGCCTCCAAGGTGTA
TGATCACAAGGAGATCGAGGGTCGGTGGCAACGATACTGGGAGGAAAAGA
GGACGTTCAGGACACCAGAGAGAACGGAGGGCAAACCGAAGAAGTTTGTC
CTGGACATGTTTCCATATCCGTCTGGATCGGGGTTGCACGTTGGTCACCC
TGAAGGATACACTGCTTCTGACGTCATGGCGAGGTACTTATTACTTCGTA
TTCTTACGTTATCCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142776:322..588-

>mRNA_H-elongata_contig142776.2959.1 ID=mRNA_H-elongata_contig142776.2959.1|Name=mRNA_H-elongata_contig142776.2959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig142776:322..588- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGCGTCGCTTCCTCCGACGCAGCGGTGGTGGCCTCCAAGGTGTA
TGATCACAAGGAGATCGAGGGTCGGTGGCAACGATACTGGGAGGAAAAGA
GGACGTTCAGGACACCAGAGAGAACGGAGGGCAAACCGAAGAAGTTTGTC
CTGGACATGTTTCCATATCCGTCTGGATCGGGGTTGCACGTTGGTCACCC
TGAAGGATACACTGCTTCTGACGTCATGGCGAGGTACTTATTACTTCGTA
TTCTTACGTTATCCTGAATGGCCAGCGTCGCTTCCTCCGACGCAGCGGTG
GTGGCCTCCAAGGTGTATGATCACAAGGAGATCGAGGGTCGGTGGCAACG
ATACTGGGAGGAAAAGAGGACGTTCAGGACACCAGAGAGAACGGAGGGCA
AACCGAAGAAGTTTGTCCTGGACATGTTTCCATATCCGTCTGGATCGGGG
TTGCACGTTGGTCACCCTGAAGGATACACTGCTTCTGACGTCATGGCGAG
GTACTTATTACTTCGTATTCTTACGTTATCCTGA
back to top