mRNA_H-elongata_contig142696.2955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142696.2955.1
Unique NamemRNA_H-elongata_contig142696.2955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: D8LM02_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM02_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 8.210e-108
Identity = 199/291 (68.38%), Postives = 213/291 (73.20%), Query Frame = 1 
Query:    1 SDPPED-SCSLRGLVWKVLLGTIHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSP-GGTVIAGESPASAGAXXXXXXXXXXXXXXXXG---------------SSAIAFSKAGTGAR-------TAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            +DP ED  CSLRGLVWKVLLGTIH D+ LY RLV++GPS+EDVKIREDTFRTF  D+EFRRRV+ DKLSRINNA+VRLN P GG  +A  + A    XXXXXXXXXXXXX                   S++    K G GA        T   T  G        KGLYVQGMMVLCAPLLFVMPEVDAFY FNSLLN HMPR      YVAANLDGVHAGCALVDR LS VDP LFNYLESKF+TANIYAFPL+MSLHACVPPLEE VKLWDAVFSFGVHLEVLICVAQ
Sbjct:  159 ADPGEDHQCSLRGLVWKVLLGTIHTDSMLYIRLVAKGPSSEDVKIREDTFRTFPRDEEFRRRVHEDKLSRINNAYVRLNHPDGGAPVAATAAADTXXXXXXXXXXXXXXXNDKHGGEEHPPKSEDVPRCSNSSIVDKEGAGAEAGGAAPATGGATGEGEERVGDGGKGLYVQGMMVLCAPLLFVMPEVDAFYCFNSLLNQHMPR------YVAANLDGVHAGCALVDRVLSMVDPVLFNYLESKFLTANIYAFPLVMSLHACVPPLEEAVKLWDAVFSFGVHLEVLICVAQ 443
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BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: K3WLK1_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLK1_GLOUD)

HSP 1 Score: 181 bits (460), Expect = 5.790e-53
Identity = 103/264 (39.02%), Postives = 140/264 (53.03%), Query Frame = 1 
Query:   13 EDSCSLRGLVWKVLLGT-IHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            E++CSLRG VWKV LG    +D   Y  +  RG S  D  IR DTFRTFRGD  F +RV  +KL R+ N F+                                           ++ G  + ++  + +            YVQGM VLCAPLL+VMPE DA+Y+F +L+  H P       Y+A  L GV +GC LVD+ L  +DP LFN+L ++ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH  V++ VA 
Sbjct:   25 EENCSLRGRVWKVFLGVHAEIDRGKYAEMAERGASYCDGDIRNDTFRTFRGDPAFAQRVPEEKLVRLLNVFI-------------------------------------------NELGANSNSSGNSESKTASPDHPDYIRYVQGMNVLCAPLLYVMPEADAYYTFCNLIVKHCPH------YMAPKLKGVESGCLLVDKCLQTLDPDLFNHLSTRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 239
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BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A6H5JMC0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.810e-51
Identity = 112/209 (53.59%), Postives = 124/209 (59.33%), Query Frame = 1 
Query:    1 SDPPED-SCSLRGLVWKVLLGTIHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSP-GGTVIA---------------------------GESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPR 540
            +DP ED  CSLRGLVWKVLLGTIH D+ LY RLV++GPS+EDVKIREDTFRTF  D+EFRRRV+ DKLSRINNA+VRLN P GG  +A                           GE                       G+ A   + A  GA   +  R G G      KGLYVQGMMVLCAPLLFVMPEVDAFY FNSLLN HMPR
Sbjct:  187 TDPGEDHQCSLRGLVWKVLLGTIHTDSMLYIRLVAKGPSSEDVKIREDTFRTFPRDEEFRRRVHEDKLSRINNAYVRLNHPDGGAPVAATAAADTVRRGSEGQGREGSGSKDKHGGEEQPPKSEDVPRCSNPAIVHKDGAGAEAGGAAPASGGATGEREERVGDGG-----KGLYVQGMMVLCAPLLFVMPEVDAFYCFNSLLNQHMPR 390
[Close]
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: W2HKV9_PHYPR (Rab-GAP TBC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2HKV9_PHYPR)

HSP 1 Score: 177 bits (448), Expect = 1.830e-50
Identity = 107/261 (41.00%), Postives = 136/261 (52.11%), Query Frame = 1 
Query:   22 CSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            CSLRG VWK  LG  + +D   Y  LV RG S  D  IR DTFRTFRGD EF +RV  +KL R+ N F+           G SP                             K   G     G    +          YVQGM VLCAPLL+V+PE DA+++F  L+  H P       Y+A  L GV  GCALVD+ L  +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH  V++ VA 
Sbjct:   63 CSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDLEFAQRVPEEKLVRLLNVFINE--------LGSSPGE--------------------------EKQEDGDNARNGNLPSI---------RYVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYQHLSSRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 274
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BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A5D6XHK7_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHK7_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.990e-50
Identity = 104/268 (38.81%), Postives = 140/268 (52.24%), Query Frame = 1 
Query:    1 SDPPEDSCSLRGLVWKVLLGT-IHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            +DP   +CSLRG +WK+ LG    +D   Y  L +RG S  D  IR DTFRTFRGD  F +RV  +KL+R+ N F+     GG   A                                            ++ G G         YVQGM +LCAPLL+VMPE DA+Y+F  L+  H P       Y+A  L GV +GC LVD+ L  +D  LF++L+S+ +TA IYA PL++SL AC PPL E +++WD +F+ GVH  V++ VA 
Sbjct:   61 ADPCGTTCSLRGRIWKLFLGVDAAVDREQYAALAARGASPFDGDIRNDTFRTFRGDPAFAQRVPEEKLARLLNVFINELGTGGAHDA--------------------------------------------SQVGEGHPEHIR---YVQGMNILCAPLLYVMPEADAYYTFRQLVMKHCPH------YMAPRLQGVESGCLLVDKCLQTLDVDLFHHLKSRGITARIYALPLVLSLFACAPPLHELLRVWDVLFAVGVHFVVVLAVAH 275
[Close]
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A225VL10_9STRA (Rab-GAP TBC domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VL10_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.380e-50
Identity = 106/268 (39.55%), Postives = 138/268 (51.49%), Query Frame = 1 
Query:    1 SDPPEDSCSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            +D     CSLRG VWK  LG  + +D   Y  LV RG S  D  IR DTFRTFRGD EF +RV  +KL R+ N F+           G +P                             K   G     G    +          YVQGM VLCAPLL+V+PE DA+++F  L+  H P       Y+A  L GV  GCALVD+ L  +DP L+ +L S+ ++A IYA PL++SL ACVPPL E +++WD +F+ GVH  V++ VA 
Sbjct:   50 TDSNASLCSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDSEFAQRVPEEKLVRLLNVFINE--------LGSNPGE--------------------------EKQEDGEHARGGNLPSI---------RYVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYRHLSSRGISAQIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 268
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BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A0P1AU96_PLAHL (Bub2 protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AU96_PLAHL)

HSP 1 Score: 178 bits (452), Expect = 3.560e-50
Identity = 110/267 (41.20%), Postives = 141/267 (52.81%), Query Frame = 1 
Query:    7 PPEDS-CSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            P +DS CSLRG VWK  LG  + +D   Y  LV RG S  D  IR DTFRTFRGD EF +RV  +KL R+ N F+           G SP+                                 ++  K  R G           YVQGM VLCAPLL+V+PE DA++ F  L+  H P       Y+A  L GV  GCALVD+ L  +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH  V++ VA 
Sbjct:   43 PRDDSLCSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDLEFAQRVPEEKLVRLLNVFINE--------LGSSPSEE-----------------------------ENSKDGKNGRCG-----NLPSIRYVQGMNVLCAPLLYVLPEPDAYHMFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYRHLASRGITAQIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVILAVAH 261
[Close]
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: W2RIC6_PHYPN (Rab-GAP TBC domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2RIC6_PHYPN)

HSP 1 Score: 179 bits (453), Expect = 6.900e-50
Identity = 109/263 (41.44%), Postives = 141/263 (53.61%), Query Frame = 1 
Query:   22 CSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRL--NSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            CSLRG VWK  LG  + +D   Y  LV RG S  D  IR DTFRTFRGD EF +RV  +KL R+ N F+    +SPG         A  G                  +    F+K G                    +  YVQGM VLCAPLL+V+PE DA+++F  L+  H P       Y+A  L GV  GCALVD+ L  +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH  V++ VA 
Sbjct:   63 CSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDLEFAQRVPEEKLVRLLNVFINELGSSPGEEKQEDGDNARNG---NLPSIRWVAFAFWQNNVFFFFNKVG--------------------RSRYVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYQHLSSRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 296
[Close]
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A6A3MEJ8_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MEJ8_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.490e-48
Identity = 105/261 (40.23%), Postives = 137/261 (52.49%), Query Frame = 1 
Query:   22 CSLRGLVWKVLLGT-IHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            C+LRG VWK  LG    +D   Y+ LV RG S  D  IR DTFRTFRGD EF +RV  +KL R+ N F+           G +P                                   R  K     +G      +  YVQGM VLCAPLL+V+PE DA+++F  L+  H P       Y+A  L GV  GCALVD+ L  +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH  V++ VA 
Sbjct:   55 CTLRGRVWKAFLGVESDVDMTKYSALVGRGASHYDGDIRNDTFRTFRGDSEFAQRVPEEKLVRLLNVFINE--------LGSNPD----------------------------------RDEKKEDGELGGNLPSIR--YVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLETLDPDLYRHLSSRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 265
[Close]
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A024GJW3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJW3_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.130e-48
Identity = 104/265 (39.25%), Postives = 144/265 (54.34%), Query Frame = 1 
Query:   13 EDSCSLRGLVWKVLLGTIH--MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
            + +CSLRG VWK LLG     ++ + YT +V +GPS  D  IR DTFRTFRGD+ F  +V    L+ + NAF+  +         E   S+ A                    I+FS                         +YVQGM +LC P L+VMPE DA+YSF+ LL  H PR      Y+A  L GV AGCAL+D+ L  +DP LF +L +K +TA IYA P+++SL AC+PPL++ +++WD +F+ GVH  VL+ V+ 
Sbjct:  204 QQTCSLRGRVWKALLGVTPSMINVSKYTEIVQQGPSFFDADIRNDTFRTFRGDEAFAEKVPEAHLATLLNAFITQHL--------ERAKSSKAKEDDDRETSRVRY-------ISFSIF---------EPVPADFQREPSLFIYVQGMNILCGPFLYVMPECDAYYSFSQLLTRHCPR------YMAPQLKGVEAGCALMDQCLEILDPELFEHLHAKGITARIYALPMILSLFACMPPLKQLLRVWDTLFAIGVHFVVLLAVSH 438
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM02_ECTSI8.210e-10868.38Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
K3WLK1_GLOUD5.790e-5339.02Rab-GAP TBC domain-containing protein n=1 Tax=Glob... [more]
A0A6H5JMC0_9PHAE1.810e-5153.59Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
W2HKV9_PHYPR1.830e-5041.00Rab-GAP TBC domain-containing protein n=8 Tax=Phyt... [more]
A0A5D6XHK7_9STRA1.990e-5038.81Rab-GAP TBC domain-containing protein n=1 Tax=Pyth... [more]
A0A225VL10_9STRA2.380e-5039.55Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A0P1AU96_PLAHL3.560e-5041.20Bub2 protein n=1 Tax=Plasmopara halstedii TaxID=47... [more]
W2RIC6_PHYPN6.900e-5041.44Rab-GAP TBC domain-containing protein n=11 Tax=Phy... [more]
A0A6A3MEJ8_9STRA1.490e-4840.23Rab-GAP TBC domain-containing protein n=3 Tax=Phyt... [more]
A0A024GJW3_9STRA2.130e-4839.25Rab-GAP TBC domain-containing protein n=1 Tax=Albu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142696contigH-elongata_contig142696:627..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.5
Seed ortholog evalue7.4e-88
Seed eggNOG ortholog2880.D8LM02
Preferred namecdc16
KEGG koko:K02179
KEGG Pathwayko04111,map04111
GOsGO:0000075,GO:0000079,GO:0000278,GO:0000910,GO:0001100,GO:0001932,GO:0001934,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0006810,GO:0006886,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007346,GO:0008047,GO:0008104,GO:0008150,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010948,GO:0010965,GO:0010974,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0017016,GO:0017137,GO:0019220,GO:0019222,GO:0019899,GO:0022402,GO:0023051,GO:0023057,GO:0030071,GO:0030234,GO:0030695,GO:0031029,GO:0031030,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031399,GO:0031401,GO:0031577,GO:0031578,GO:0031991,GO:0032268,GO:0032270,GO:0032465,GO:0032466,GO:0032506,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033674,GO:0034613,GO:0042325,GO:0042327,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0043549,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0045184,GO:0045737,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045860,GO:0045930,GO:0045937,GO:0046578,GO:0046580,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051056,GO:0051058,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051641,GO:0051649,GO:0051726,GO:0051782,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060341,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071174,GO:0071702,GO:0071705,GO:0071900,GO:0071902,GO:0080090,GO:0090630,GO:0098772,GO:0110020,GO:0150005,GO:1901891,GO:1901892,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902363,GO:1902364,GO:1902412,GO:1902413,GO:1902531,GO:1902532,GO:1902542,GO:1902543,GO:1902773,GO:1903047,GO:1903436,GO:1903437,GO:1903827,GO:1903828,GO:1904029,GO:1904031,GO:1905818,GO:1905819,GO:1990334,GO:2000816,GO:2001251
EggNOG free text desc.activation of GTPase activity
EggNOG OGsCOG5210@1,KOG2058@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-14_002320.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size813
Cds size813
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.0788147-CDS-H-elongata_contig142696:626..11831622929847.0788147-CDS-H-elongata_contig142696:626..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142696 627..1183 +
1691679181.5918121-CDS-H-elongata_contig142696:626..11831691679181.5918121-CDS-H-elongata_contig142696:626..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142696 627..1183 +
1622929847.0953398-CDS-H-elongata_contig142696:1326..15821622929847.0953398-CDS-H-elongata_contig142696:1326..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142696 1327..1582 +
1691679181.6041198-CDS-H-elongata_contig142696:1326..15821691679181.6041198-CDS-H-elongata_contig142696:1326..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142696 1327..1582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142696.2955.1prot_H-elongata_contig142696.2955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142696 627..1582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142696.2955.1

>prot_H-elongata_contig142696.2955.1 ID=prot_H-elongata_contig142696.2955.1|Name=mRNA_H-elongata_contig142696.2955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
SDPPEDSCSLRGLVWKVLLGTIHMDAALYTRLVSRGPSAEDVKIREDTFR
TFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAGGSDA
AANDNNREEERGSSAIAFSKAGTGARTAKGTRAGVGGGGGGGKGLYVQGM
MVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCA
LVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWD
AVFSFGVHLEVLICVAQVRT*
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mRNA from alignment at H-elongata_contig142696:627..1582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142696.2955.1 ID=mRNA_H-elongata_contig142696.2955.1|Name=mRNA_H-elongata_contig142696.2955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig142696:627..1582+ (Himanthalia elongata Himel1 dioecious)
TCTGACCCCCCAGAGGACAGTTGTTCACTGCGAGGCCTCGTGTGGAAAGT
CCTTCTGGGTACGATCCACATGGACGCGGCGCTCTACACGAGGCTGGTTA
GCAGGGGTCCCTCCGCGGAGGACGTAAAGATAAGGGAGGATACTTTCCGC
ACGTTCCGAGGCGACGACGAGTTCCGACGGAGGGTGAACGCGGACAAGCT
CTCCCGTATTAACAACGCCTTTGTAAGGTTGAACTCCCCAGGAGGCACCG
TGATCGCTGGAGAGAGTCCTGCCTCGGCGGGAGCGGGGGGGAGCGACGCA
GCCGCGAACGATAACAACCGAGAGGAGGAGAGGGGTAGTAGCGCTATTGC
ATTTAGTAAGGCAGGGACGGGCGCGAGAACTGCAAAGGGCACAAGGGCAG
GGGTGGGGGGAGGCGGGGGCGGCGGAAAGGGGCTCTATGTGCAGGGAATG
ATGGTGCTTTGCGCGCCTCTGCTCTTTGTGATGCCGGAGGTGGATGCCTT
CTACTCCTTTAACTCGTTGCTGAACGACCACATGCCCAGGCGAGAGAACC
GCGTTGTGTGGTGACCATAGTCGGGGAGGGGGGCAATGCCGCCGCGAAGC
TTATAAACATAACCCGCACGCGGGGACCTCATTACAGGGCCAAGATGAAC
CGCTTCGCGCCTCGCGCTCATCCCATCCCGTCCCCTGGCTATATTGGCAG
GTATGTCGCGGCGAACCTGGACGGCGTTCATGCTGGCTGCGCTCTTGTAG
ACCGTGCCTTGAGCGCCGTAGATCCTTCGCTGTTCAACTACCTGGAGAGC
AAGTTCGTCACCGCGAATATATACGCGTTCCCGCTCCTCATGAGCTTGCA
CGCGTGCGTCCCCCCCCTGGAAGAAACCGTCAAGTTGTGGGACGCAGTGT
TTTCGTTTGGGGTGCATCTAGAGGTCTTGATTTGTGTCGCCCAGGTGCGT
ACTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig142696:627..1582+

>mRNA_H-elongata_contig142696.2955.1 ID=mRNA_H-elongata_contig142696.2955.1|Name=mRNA_H-elongata_contig142696.2955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig142696:627..1582+ (Himanthalia elongata Himel1 dioecious)
TCTGACCCCCCAGAGGACAGTTGTTCACTGCGAGGCCTCGTGTGGAAAGT
CCTTCTGGGTACGATCCACATGGACGCGGCGCTCTACACGAGGCTGGTTA
GCAGGGGTCCCTCCGCGGAGGACGTAAAGATAAGGGAGGATACTTTCCGC
ACGTTCCGAGGCGACGACGAGTTCCGACGGAGGGTGAACGCGGACAAGCT
CTCCCGTATTAACAACGCCTTTGTAAGGTTGAACTCCCCAGGAGGCACCG
TGATCGCTGGAGAGAGTCCTGCCTCGGCGGGAGCGGGGGGGAGCGACGCA
GCCGCGAACGATAACAACCGAGAGGAGGAGAGGGGTAGTAGCGCTATTGC
ATTTAGTAAGGCAGGGACGGGCGCGAGAACTGCAAAGGGCACAAGGGCAG
GGGTGGGGGGAGGCGGGGGCGGCGGAAAGGGGCTCTATGTGCAGGGAATG
ATGGTGCTTTGCGCGCCTCTGCTCTTTGTGATGCCGGAGGTGGATGCCTT
CTACTCCTTTAACTCGTTGCTGAACGACCACATGCCCAGGCGAGAGAACC
GCGTTGTTCTGACCCCCCAGAGGACAGTTGTTCACTGCGAGGCCTCGTGT
GGAAAGTCCTTCTGGGTACGATCCACATGGACGCGGCGCTCTACACGAGG
CTGGTTAGCAGGGGTCCCTCCGCGGAGGACGTAAAGATAAGGGAGGATAC
TTTCCGCACGTTCCGAGGCGACGACGAGTTCCGACGGAGGGTGAACGCGG
ACAAGCTCTCCCGTATTAACAACGCCTTTGTAAGGTTGAACTCCCCAGGA
GGCACCGTGATCGCTGGAGAGAGTCCTGCCTCGGCGGGAGCGGGGGGGAG
CGACGCAGCCGCGAACGATAACAACCGAGAGGAGGAGAGGGGTAGTAGCG
CTATTGCATTTAGTAAGGCAGGGACGGGCGCGAGAACTGCAAAGGGCACA
AGGGCAGGGGTGGGGGGAGGCGGGGGCGGCGGAAAGGGGCTCTATGTGCA
GGGAATGATGGTGCTTTGCGCGCCTCTGCTCTTTGTGATGCCGGAGGTGG
ATGCCTTCTACTCCTTTAACTCGTTGCTGAACGACCACATGCCCAGGCGA
GAGAACCGCGTTGTGTATGTCGCGGCGAACCTGGACGGCGTTCATGCTGG
CTGCGCTCTTGTAGACCGTGCCTTGAGCGCCGTAGATCCTTCGCTGTTCA
ACTACCTGGAGAGCAAGTTCGTCACCGCGAATATATACGCGTTCCCGCTC
CTCATGAGCTTGCACGCGTGCGTCCCCCCCCTGGAAGAAACCGTCAAGTT
GTGGGACGCAGTGTTTTCGTTTGGGGTGCATCTAGAGGTCTTGATTTGTG
TCGCCCAGGTGCGTACTTAAGTATGTCGCGGCGAACCTGGACGGCGTTCA
TGCTGGCTGCGCTCTTGTAGACCGTGCCTTGAGCGCCGTAGATCCTTCGC
TGTTCAACTACCTGGAGAGCAAGTTCGTCACCGCGAATATATACGCGTTC
CCGCTCCTCATGAGCTTGCACGCGTGCGTCCCCCCCCTGGAAGAAACCGT
CAAGTTGTGGGACGCAGTGTTTTCGTTTGGGGTGCATCTAGAGGTCTTGA
TTTGTGTCGCCCAGGTGCGTACTTAA
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