mRNA_H-elongata_contig14262.2949.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI) HSP 1 Score: 333 bits (854), Expect = 3.170e-105 Identity = 162/227 (71.37%), Postives = 194/227 (85.46%), Query Frame = 3
Query: 198 SKTTVKKLEIVKSKLVREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTINVQFELQDSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 878
SK T +E+VK ++ R+P+LG+QLEEVARGGDGRGLVLV+G+EPGGNAEASG++ VGDT+C G+E M+RVEALDWDQTVS LG+FA+ EI +V KRLVKR++INVQFEL ++D++IK GSNLRGEMIRL VPVYDP+T R+DQPYATGNCAGEG CGTCFVEVQ+GA+LLT D+EE ML+S GNLP+RWRLSCK IVG+EN GTVR+KAVPQ EWR Q
Sbjct: 109 SKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIEGD-MSRVEALDWDQTVSVLGSFAEESEIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQ 334
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA) HSP 1 Score: 217 bits (552), Expect = 1.580e-61 Identity = 117/220 (53.18%), Postives = 149/220 (67.73%), Query Frame = 3
Query: 246 REPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTR-MTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTINVQFE-----------LQDSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 869
R+P GI++ RGLVL+ V GGNA SG + GDT+ +VG E R MTRVE D+D TV+ALG +AD+ EIT+V KRLV+RKT+ V FE ++ + + GSNLR EMIR +PVYD KT R+DQPYATGNC GEGICGTCFVEVQEGAELL+P D E M++ N LP RWRLSC+T+VG +N G VR++++PQ+ +
Sbjct: 68 RDPAFGIEIV--------RGLVLIGDV--GGNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYADLAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMRN--LPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAY 275
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK) HSP 1 Score: 213 bits (543), Expect = 7.450e-60 Identity = 113/217 (52.07%), Postives = 144/217 (66.36%), Query Frame = 3
Query: 219 LEIVKSKLVREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTINVQFELQD-SNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTE 866
+EI K+++ RE LG+ L E+ G DGRGLVLV V GGNA +GQ VGD + WVG EP MTRVE LD+D T++ALG +AD +T+V KRLV+R+ + V D S ++ GS LRGEM+R G+ VYDP R+DQPY TGNC GEG+CGTC V V EG ELL+ DR E M++ P R+RLSC+TIVG N G V +K++P E
Sbjct: 99 IEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYADREAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLEKR--PARYRLSCRTIVGVTNQPGKVVLKSMPTLE 313
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.400e-54 Identity = 104/204 (50.98%), Postives = 138/204 (67.65%), Query Frame = 3
Query: 300 RGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMTR----VEALDWDQTVSALGTFADV---REITIVCKRLVKRKTINVQFELQDSN-KDYDIKTGSNLRGEMIRLGVP--VYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQR 881
RGLVLV + PGGNA S ++ VGDT+C +PT R +EA+D D T+ LG + +++ ++ KRLVKR+ +NV+ L D K + +GSNLRGEMIR G+P +YDP+T RYDQP+ TGNC GEGICGTC +EV +G E+L+ AD E ML+ N P+RWRLSC+T VG +N G+V+V+AVPQ E RE R
Sbjct: 1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAA-DPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLENQ--PIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESR 201
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.140e-48 Identity = 109/239 (45.61%), Postives = 139/239 (58.16%), Query Frame = 3
Query: 198 SKTTVKKLEIVKSKL-VREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEAS----GQVFVGDTICWVGVEPTRMTRVEALDWDQTVSALGTFADVRE--ITIVCKRLVKRKTINVQF-------ELQDSNKDYD----IKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQ 860
SK +EI K + + E +G+ LEE+ RG DGRG VLVS + P GNA + G++ VGD IC++G EP M R E LD++QT+ AL F + IT+V KRLV R +++V E K + + GS LR E++R G+PVY TLR+DQPY TGNC GEGICGTC V+V EG ELL D E M+ WRLSC+ IVG N GTVR K +PQ
Sbjct: 40 SKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAA-NWRLSCRVIVGATNTPGTVRFKLMPQ 277
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA) HSP 1 Score: 162 bits (410), Expect = 5.260e-41 Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 3
Query: 219 LEIVKSKLVREPTLGIQLEEVARGGD---GRGLVLVSGVEPGGNAEASG-QVFVGDTICWVGVEPTRMTRVEALDWDQTVSAL-GTFADVREITIVCKRLVKRKTINVQFELQDSNKD-YDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 869
L++VK+ + R+P+LGI L E+ D R LVLV G+E GNA A G + VGD I + E D+D + + G E+T+V RLV+R + + +EL + ++ GSNLRG ++ GV +YD +T R+D PYATG+CAGEG+CGTC V V G +LL+PADR E LI G P+ WR +C+ VG +N EGTV V+ PQ+ +
Sbjct: 90 LKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGVDPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNEA-LICKGR-PMGWRAACRVFVGADNQEGTVEVRLQPQSRF 308
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.020e-39 Identity = 99/242 (40.91%), Postives = 139/242 (57.44%), Query Frame = 3
Query: 192 FHSKTTVKKLEIVKSKLV---REPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMT-RVEALDWDQTVSALGTFADVRE--------ITIVCKRLVKRKTINVQFELQDSN-KDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 878
F S+ V LE++++++ P+LG+ L E+A DGRGLVLVS V S + VGD I V + R L++D+TV A+G DV+E + + RLVKR TI VQ N + G NLR ++R + +Y+ KT R+D PYATG+CAGEG+CGTC V V EG +LL P D EE LI+ G PL WR SC+T+VG N GT++V+ PQ+++ ++
Sbjct: 143 FDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVG---DVKEAALKGDGTLHLELNRLVKRATIQVQVVQPGKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAEE-LITRGR-PLSWRASCRTVVGSNNEGGTIQVRVQPQSDFEDE 379
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC) HSP 1 Score: 144 bits (363), Expect = 1.210e-34 Identity = 96/238 (40.34%), Postives = 136/238 (57.14%), Query Frame = 3
Query: 192 FHSKTTVKKLEIVKSKL-VREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQ-VFVGDTICWVGV-EPTRMTRVEALDWDQTVSALGTFADVRE---ITIVCKRLVKRKTINVQFELQDSNKDYDI---KTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 878
F SK LE+V + + V LG+ L E+A DGRGLV+VS + G A+A+ Q + VGDTI V + RV A ++D+TV A+G + IT+ RL+KR + V+ E+ D + + G NLR +R + +YD +T R+DQP+ TGNC G+G+CGTC V V +G +LL P D E+ I+ G P WR SC+T VG NV GT+R+ PQ+E E+
Sbjct: 70 FDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKIT-GNAAKANPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKR--LPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKD-SHEVFITKGRPP-SWRASCRTTVGFNNVGGTLRISLHPQSELPEE 302
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: D8LNE7_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE7_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 8.910e-16 Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = -1
Query: 1730 IVEFLVKRGAKVNHTNSSGNTALHFAMSYDKSGKVGEFLINNGADDSIENIKGLCPCEWDG 1912
+VEFLV+RGA VNH N++GNT+LHFAMSYD SGK+GE+LINNGADD+IEN +GL P +DG
Sbjct: 2862 VVEFLVQRGADVNHRNATGNTSLHFAMSYDSSGKMGEYLINNGADDTIENKQGLSP--YDG 2920
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S1ZCW4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCW4_TRICV) HSP 1 Score: 85.5 bits (210), Expect = 2.880e-14 Identity = 76/240 (31.67%), Postives = 116/240 (48.33%), Query Frame = 3
Query: 246 REPTLGIQLEEVARG-GDGRGLVLVSGVEPGGNAEASGQVFVGDTICWV-------------GVEPTR-MTRVEALDWDQTVSALGTF-ADVREITIVCKRLVKRKTINVQFELQ--------DSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW-REQRANK 890
R+ LG++L E+A G DG G+ +V+ V GGNAE +G V GD+I V VE T E D+D T++AL F A+V E+ + KRL + + V E D+ + ++ G NLR ++ G+ + D K + D C G+ C V V G +LL P EE L++ + RLSCK+ VG EG++R++ + +W +E R N+
Sbjct: 115 RDGGLGMELLEIAGGRDDGYGITVVTAVTEGGNAERAG-VVPGDSIATVVGAARAVSSGGLLDVEETEEAVNCECRDFDSTIAALTAFPAEVEELNLGIKRLRRWPKVKVVVEYPPSQCAEGVDNKETLELFAGENLRRALLNRGIVMEDSKAPKCDF------CGGK-----CTVSVDVGFDLLNPMSTTEEKLMAKNP---KCRLSCKSTVGYNMQEGSMRLR-INLNQWSKEDRRNR 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14262.2949.1 >prot_H-elongata_contig14262.2949.1 ID=prot_H-elongata_contig14262.2949.1|Name=mRNA_H-elongata_contig14262.2949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp MHTLHAHICISHVTTDVHHGRTIQYPHSVPSCCKRFLKKMFHSKTTVKKLback to top mRNA from alignment at H-elongata_contig14262:4361..7598- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14262.2949.1 ID=mRNA_H-elongata_contig14262.2949.1|Name=mRNA_H-elongata_contig14262.2949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3238bp|location=Sequence derived from alignment at H-elongata_contig14262:4361..7598- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14262:4361..7598- >mRNA_H-elongata_contig14262.2949.1 ID=mRNA_H-elongata_contig14262.2949.1|Name=mRNA_H-elongata_contig14262.2949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig14262:4361..7598- (Himanthalia elongata Himel1 dioecious)back to top |