mRNA_H-elongata_contig14262.2949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14262.2949.1
Unique NamemRNA_H-elongata_contig14262.2949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 3.170e-105
Identity = 162/227 (71.37%), Postives = 194/227 (85.46%), Query Frame = 3
Query:  198 SKTTVKKLEIVKSKLVREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTINVQFELQDSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 878
            SK T   +E+VK ++ R+P+LG+QLEEVARGGDGRGLVLV+G+EPGGNAEASG++ VGDT+C  G+E   M+RVEALDWDQTVS LG+FA+  EI +V KRLVKR++INVQFEL   ++D++IK GSNLRGEMIRL VPVYDP+T R+DQPYATGNCAGEG CGTCFVEVQ+GA+LLT  D+EE ML+S GNLP+RWRLSCK IVG+EN  GTVR+KAVPQ EWR Q
Sbjct:  109 SKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIEGD-MSRVEALDWDQTVSVLGSFAEESEIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQ 334          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.580e-61
Identity = 117/220 (53.18%), Postives = 149/220 (67.73%), Query Frame = 3
Query:  246 REPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTR-MTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTINVQFE-----------LQDSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 869
            R+P  GI++         RGLVL+  V  GGNA  SG +  GDT+ +VG E  R MTRVE  D+D TV+ALG +AD+ EIT+V KRLV+RKT+ V FE           ++   +   +  GSNLR EMIR  +PVYD KT R+DQPYATGNC GEGICGTCFVEVQEGAELL+P D  E M++ N  LP RWRLSC+T+VG +N  G VR++++PQ+ +
Sbjct:   68 RDPAFGIEIV--------RGLVLIGDV--GGNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYADLAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMRN--LPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAY 275          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK)

HSP 1 Score: 213 bits (543), Expect = 7.450e-60
Identity = 113/217 (52.07%), Postives = 144/217 (66.36%), Query Frame = 3
Query:  219 LEIVKSKLVREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTINVQFELQD-SNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTE 866
            +EI K+++ RE  LG+ L E+  G DGRGLVLV  V  GGNA  +GQ  VGD + WVG EP  MTRVE LD+D T++ALG +AD   +T+V KRLV+R+ + V     D S    ++  GS LRGEM+R G+ VYDP   R+DQPY TGNC GEG+CGTC V V EG ELL+  DR E M++     P R+RLSC+TIVG  N  G V +K++P  E
Sbjct:   99 IEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYADREAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLEKR--PARYRLSCRTIVGVTNQPGKVVLKSMPTLE 313          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.400e-54
Identity = 104/204 (50.98%), Postives = 138/204 (67.65%), Query Frame = 3
Query:  300 RGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMTR----VEALDWDQTVSALGTFADV---REITIVCKRLVKRKTINVQFELQDSN-KDYDIKTGSNLRGEMIRLGVP--VYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQR 881
            RGLVLV  + PGGNA  S ++ VGDT+C    +PT   R    +EA+D D T+  LG  +     +++ ++ KRLVKR+ +NV+  L D   K   + +GSNLRGEMIR G+P  +YDP+T RYDQP+ TGNC GEGICGTC +EV +G E+L+ AD  E ML+ N   P+RWRLSC+T VG +N  G+V+V+AVPQ E RE R
Sbjct:    1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAA-DPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLENQ--PIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESR 201          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.140e-48
Identity = 109/239 (45.61%), Postives = 139/239 (58.16%), Query Frame = 3
Query:  198 SKTTVKKLEIVKSKL-VREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEAS----GQVFVGDTICWVGVEPTRMTRVEALDWDQTVSALGTFADVRE--ITIVCKRLVKRKTINVQF-------ELQDSNKDYD----IKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQ 860
            SK     +EI K  + + E  +G+ LEE+ RG DGRG VLVS + P GNA  +    G++ VGD IC++G EP  M R E LD++QT+ AL  F +     IT+V KRLV R +++V         E     K +     +  GS LR E++R G+PVY   TLR+DQPY TGNC GEGICGTC V+V EG ELL   D  E M+         WRLSC+ IVG  N  GTVR K +PQ
Sbjct:   40 SKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAA-NWRLSCRVIVGATNTPGTVRFKLMPQ 277          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.260e-41
Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 3
Query:  219 LEIVKSKLVREPTLGIQLEEVARGGD---GRGLVLVSGVEPGGNAEASG-QVFVGDTICWVGVEPTRMTRVEALDWDQTVSAL-GTFADVREITIVCKRLVKRKTINVQFELQDSNKD-YDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW 869
            L++VK+ + R+P+LGI L E+    D    R LVLV G+E  GNA A G  + VGD I  +          E  D+D  +  + G      E+T+V  RLV+R  + + +EL + ++       GSNLRG  ++ GV +YD +T R+D PYATG+CAGEG+CGTC V V  G +LL+PADR E  LI  G  P+ WR +C+  VG +N EGTV V+  PQ+ +
Sbjct:   90 LKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGVDPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNEA-LICKGR-PMGWRAACRVFVGADNQEGTVEVRLQPQSRF 308          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.020e-39
Identity = 99/242 (40.91%), Postives = 139/242 (57.44%), Query Frame = 3
Query:  192 FHSKTTVKKLEIVKSKLV---REPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVGDTICWVGVEPTRMT-RVEALDWDQTVSALGTFADVRE--------ITIVCKRLVKRKTINVQFELQDSN-KDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 878
            F S+  V  LE++++++      P+LG+ L E+A   DGRGLVLVS V        S  + VGD I  V      +  R   L++D+TV A+G   DV+E        + +   RLVKR TI VQ      N    +   G NLR  ++R  + +Y+ KT R+D PYATG+CAGEG+CGTC V V EG +LL P D  EE LI+ G  PL WR SC+T+VG  N  GT++V+  PQ+++ ++
Sbjct:  143 FDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVG---DVKEAALKGDGTLHLELNRLVKRATIQVQVVQPGKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAEE-LITRGR-PLSWRASCRTVVGSNNEGGTIQVRVQPQSDFEDE 379          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC)

HSP 1 Score: 144 bits (363), Expect = 1.210e-34
Identity = 96/238 (40.34%), Postives = 136/238 (57.14%), Query Frame = 3
Query:  192 FHSKTTVKKLEIVKSKL-VREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQ-VFVGDTICWVGV-EPTRMTRVEALDWDQTVSALGTFADVRE---ITIVCKRLVKRKTINVQFELQDSNKDYDI---KTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEWREQ 878
            F SK     LE+V + + V    LG+ L E+A   DGRGLV+VS +  G  A+A+ Q + VGDTI  V   +     RV A ++D+TV A+G   +      IT+   RL+KR  + V+ E+ D +    +     G NLR   +R  + +YD +T R+DQP+ TGNC G+G+CGTC V V +G +LL P D   E+ I+ G  P  WR SC+T VG  NV GT+R+   PQ+E  E+
Sbjct:   70 FDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKIT-GNAAKANPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKR--LPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKD-SHEVFITKGRPP-SWRASCRTTVGFNNVGGTLRISLHPQSELPEE 302          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: D8LNE7_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 8.910e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = -1
Query: 1730 IVEFLVKRGAKVNHTNSSGNTALHFAMSYDKSGKVGEFLINNGADDSIENIKGLCPCEWDG 1912
            +VEFLV+RGA VNH N++GNT+LHFAMSYD SGK+GE+LINNGADD+IEN +GL P  +DG
Sbjct: 2862 VVEFLVQRGADVNHRNATGNTSLHFAMSYDSSGKMGEYLINNGADDTIENKQGLSP--YDG 2920          
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Match: A0A7S1ZCW4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCW4_TRICV)

HSP 1 Score: 85.5 bits (210), Expect = 2.880e-14
Identity = 76/240 (31.67%), Postives = 116/240 (48.33%), Query Frame = 3
Query:  246 REPTLGIQLEEVARG-GDGRGLVLVSGVEPGGNAEASGQVFVGDTICWV-------------GVEPTR-MTRVEALDWDQTVSALGTF-ADVREITIVCKRLVKRKTINVQFELQ--------DSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCAGEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRENVEGTVRVKAVPQTEW-REQRANK 890
            R+  LG++L E+A G  DG G+ +V+ V  GGNAE +G V  GD+I  V              VE T      E  D+D T++AL  F A+V E+ +  KRL +   + V  E          D+ +  ++  G NLR  ++  G+ + D K  + D       C G+     C V V  G +LL P    EE L++      + RLSCK+ VG    EG++R++ +   +W +E R N+
Sbjct:  115 RDGGLGMELLEIAGGRDDGYGITVVTAVTEGGNAERAG-VVPGDSIATVVGAARAVSSGGLLDVEETEEAVNCECRDFDSTIAALTAFPAEVEELNLGIKRLRRWPKVKVVVEYPPSQCAEGVDNKETLELFAGENLRRALLNRGIVMEDSKAPKCDF------CGGK-----CTVSVDVGFDLLNPMSTTEEKLMAKNP---KCRLSCKSTVGYNMQEGSMRLR-INLNQWSKEDRRNR 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14262.2949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNE9_ECTSI3.170e-10571.37Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CRA8_9STRA1.580e-6153.182Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4DIM7_HETAK7.450e-6052.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V297_9STRA1.400e-5450.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CWU2_9STRA1.140e-4845.61PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7R9YBT6_9STRA5.260e-4142.15Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3P6U2_9STRA1.020e-3940.91Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G5I1_PHATC1.210e-3440.34Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
D8LNE7_ECTSI8.910e-1672.13SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1ZCW4_TRICV2.880e-1431.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14262contigH-elongata_contig14262:4361..7598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.3
Seed ortholog evalue4.4e-88
Seed eggNOG ortholog2880.D8LNE9
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0010598,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0098796
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S4WU@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFerredoxin
Ec32 orthologEc-04_004110.1
Exons5
Model size2131
Cds size822
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.5902052-UTR-H-elongata_contig14262:4360..55981622929846.5902052-UTR-H-elongata_contig14262:4360..5598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14262 4361..5598 -
1691679181.3662705-UTR-H-elongata_contig14262:4360..55981691679181.3662705-UTR-H-elongata_contig14262:4360..5598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14262 4361..5598 -
1622929846.6837378-UTR-H-elongata_contig14262:7527..75981622929846.6837378-UTR-H-elongata_contig14262:7527..7598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14262 7528..7598 -
1691679181.4420505-UTR-H-elongata_contig14262:7527..75981691679181.4420505-UTR-H-elongata_contig14262:7527..7598Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14262 7528..7598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.6040034-CDS-H-elongata_contig14262:5598..57871622929846.6040034-CDS-H-elongata_contig14262:5598..5787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 5599..5787 -
1691679181.378407-CDS-H-elongata_contig14262:5598..57871691679181.378407-CDS-H-elongata_contig14262:5598..5787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 5599..5787 -
1622929846.6205058-CDS-H-elongata_contig14262:6182..62721622929846.6205058-CDS-H-elongata_contig14262:6182..6272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 6183..6272 -
1691679181.3963223-CDS-H-elongata_contig14262:6182..62721691679181.3963223-CDS-H-elongata_contig14262:6182..6272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 6183..6272 -
1622929846.635338-CDS-H-elongata_contig14262:6454..65931622929846.635338-CDS-H-elongata_contig14262:6454..6593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 6455..6593 -
1691679181.4067566-CDS-H-elongata_contig14262:6454..65931691679181.4067566-CDS-H-elongata_contig14262:6454..6593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 6455..6593 -
1622929846.6504748-CDS-H-elongata_contig14262:6777..68931622929846.6504748-CDS-H-elongata_contig14262:6777..6893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 6778..6893 -
1691679181.419265-CDS-H-elongata_contig14262:6777..68931691679181.419265-CDS-H-elongata_contig14262:6777..6893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 6778..6893 -
1622929846.6663027-CDS-H-elongata_contig14262:7239..75271622929846.6663027-CDS-H-elongata_contig14262:7239..7527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 7240..7527 -
1691679181.4289563-CDS-H-elongata_contig14262:7239..75271691679181.4289563-CDS-H-elongata_contig14262:7239..7527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14262 7240..7527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14262.2949.1prot_H-elongata_contig14262.2949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14262 5599..7527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14262.2949.1

>prot_H-elongata_contig14262.2949.1 ID=prot_H-elongata_contig14262.2949.1|Name=mRNA_H-elongata_contig14262.2949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp
MHTLHAHICISHVTTDVHHGRTIQYPHSVPSCCKRFLKKMFHSKTTVKKL
EIVKSKLVREPTLGIQLEEVARGGDGRGLVLVSGVEPGGNAEASGQVFVG
DTICWVGVEPTRMTRVEALDWDQTVSALGTFADVREITIVCKRLVKRKTI
NVQFELQDSNKDYDIKTGSNLRGEMIRLGVPVYDPKTLRYDQPYATGNCA
GEGICGTCFVEVQEGAELLTPADREEEMLISNGNLPLRWRLSCKTIVGRE
NVEGTVRVKAVPQTEWREQRANK*
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mRNA from alignment at H-elongata_contig14262:4361..7598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14262.2949.1 ID=mRNA_H-elongata_contig14262.2949.1|Name=mRNA_H-elongata_contig14262.2949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3238bp|location=Sequence derived from alignment at H-elongata_contig14262:4361..7598- (Himanthalia elongata Himel1 dioecious)
GTACAGCCCTTGGAGTTCAGTACAGCGGCAGGCGCGGGAGTACATCGATT TGACTAAGTACTATCCCTACCATGCACACGCTTCACGCACATATCTGTAT TTCTCATGTGACAACTGATGTACACCACGGGAGAACGATACAATATCCAC ACAGTGTTCCTTCGTGCTGTAAACGCTTCCTAAAAAAAATGTTCCATTCT AAAACAACCGTGAAAAAGCTCGAAATCGTAAAGTCGAAGCTGGTACGCGA GCCGACCTTGGGTATTCAACTCGAGGAAGTGGCACGTGGTGGCGATGGTC GCGGTTTGGTGTTGGTGTCAGGCGTTGAGCCAGGGGGAAACGCCGAGGCC TCAGGACAGGTGAGGATATTTCAGCGTTTAAATCGGTGCGTCTGAGCGAG GTCTGAATGCAAATTTCTGCCTCGAGGGCACCAGAGGAAATACCGTTTCT ACTATTATTCGTATCTTCGTGATTAGAGGTGTGTCATAACGACGAAATGA ATCCTATGAAACAACCAGAAAATCGCAGTAAGCTTATTGCAATACAGGGG AGGGTTGACATGGCTCCTCCAAAACCCCGTTCATACTACGATCATCATAT CTTCATCGACGACATCGCACCGCGTTACGACTTCGTTGCTATGATTGTAC CCGCGCTTGCCGCCCGTGCTTCTTCCACCGCAATCACGTAATCTGGACGC CGAAGGTGTTTGTCGGGGATACCATATGCTGGGTCGGGGTAGAACCCACG CGCATGACGAGGGTGGAGGCACTAGACTGGGATCAAACCGTCAGCGCCCT TGGCACTTTCGCAGACGTCAGGCGAGCGCGACAAGGCCGTGTAGCACGAT GGCAGTGATATTGACGTACGTTTTTTCTCCCGCCTCCGCTGCTCGTAGTG CTCGCTTCAGTTTTACATAGTGCATGACTTCGCGGTAGCTGACAACGCCA CAAGCTCGCGCTCGATCGTCTGGAAATGTACCCCCCCCCCCATCCGTTGC TGCAGAGAAATCACAATAGTGTGCAAGCGACTGGTGAAGCGGAAAACGAT CAACGTGCAGTTCGAGCTTCAAGACAGCAACAAAGATTACGACATCAAAA CCGGCAGTAACCTTAGGGGAGAAATGATTCGGCTTGGCGTTCCAGTGAGT TTGACGCTTTCGGCGTAAGCATATATCTGATAGTCGCTGCAGCACGGCAC AACCCCCCCCCCGGACCATCGACCTAACTGAACTTGTTCATTTCTCGTCA CCTGGGTCCCCTTCTTCGTATTGATGTGAAGTTACTGTTGATTGGTTTAT TCGCCTTCGTAACACGTGATCTCAAGGTGTACGACCCGAAAACACTGCGA TATGATCAACCATACGCGACTGGAAATTGCGCGGGAGAAGGGATCTGCGG CACCTGCTTCGTGGAGGTACTTGGTCGTGTGCGAGTGCAGGATGACCTCT AACGTCAATTTTCAATCCGTTATATCACTTCTCCGTCTTCCTCTGCCACG CTTTCCGACTCTTGGCACGTGACAAAATATTTAAGATTAAATTTATCTTT CCGATGCGGAATAATCGGATGACTCGCTATCAATGGGAGAGGTTTCATGG TAGACATTTTTGATCCCCAGATACTAAGGGCATATCCTACTGTTTCTTAC TCTGAGAAAAAAAACGGATTCTGAAGCCAGAGAGGGCACGAAAGCGAGCG TTTTTGACCCTCGCCACGTTGTACTATAACCAAAATCTCGCAATGTACGA TAATCTCCGTGCGTCTCACACACACGCGTGGATCTCCCTCCCCTGCCCTC CCCCCTACCAGGTCCAGGAGGGAGCAGAACTCTTGACGCCCGCTGATCGT GAAGAAGAAATGCTTATCTCCAATGGGAATTTGCCACTCCGGTGGCGTTT GTCGTGCAAAACGATTGTAGGCCGCGAGAATGTCGAGGGTACCGTACGGG TAAAAGCGGTACCCCAGACGGAGTGGCGGGAGCAGCGGGCGAACAAATAG TTCCGCAAACTCGTGGAACATTTCAGTCGGAGGGAAGTGATCTTCCGTCT ACAGCTCACGAGGTTGGAACTCGAGATTGAAACGTTTTCGTGTCTACAGT TGTTTATTATCGGTGTCTATAGTCGGGAGAGAACTATATATACTTTGTAG AGTTGCCTTAGATATCGTTGTTAGCAAGAAACTTTTTTCTGGTTGACAAA ATGATTCGTTAGAGATTGGTAAAGTGTCCATTCGCATCGATCAAGTGTCC ATCTGCTTCTGATTACGTATTAAAATAATGGATCCTCCAACTCAGCCACG TCGCTAATTTTTTACCCTCAAAACTGTTCTGGATTATTTTAGATGCGAGA GAATATCAAGCGCACCGGGTGATCATTTCTCGCCCGCACACAAACAGGCA TAATATGAAGCTGTCACGAGTCTTCAAGTTCGAAGTTGTGGACAGTGTAG GCCCCCTTAAGAGGAAAAGGGGTGTACCCTCGTGATGCGCACGGACTCTT CGAAAGCGGCGAGACCTAACTCAAATGCCGTCGTCTGTTGGTGTAGCGAA CGGAGAGACCAAACGTAGGGCGAATTGGACACGAGCAGGTCGGGATTGAG GACGAAACTGTTACATGGCACAACGGTACAAAAGTTTCCCCAGACATTTC AAGGTCTTAGTGAGCTCGGAGGTAGCAACCACGCGCATTTTGACATGAAA TCGAATTTGGCCACACCCGAACATTTTCGCAATATGCGTAGTTCGCTCCA CGGGTAATACATTTCCAGGTATGGAGAGGTGCATAGTTCGCGCAATTACA TAATCGTACCGTACACACGAGATAGGTTTCCCTTTTCCCGTCCCACTCAC AAGGACAAAGACCCTTGATGTTTTCGATGGAGTCGTCCGCCCCATTGTTG ATGAGGAACTCTCCCACTTTGCCGCTTTTATCGTAAGACATGGCAAAGTG CAGCGCGGTGTTACCCGACGAGTTTGTGTGGTTTACCTTGGCCCCGCGCT TTACCAAGAACTCGACGATATGTATCTTTTGGGAGAGGTCGAGCGACGTT AGCGGCCCGCAGTCGTGAGGGATTAGACACGGCAGTGCGTCTTGTAGGAT TTTGTGTTTTAGAGTCAGAGGTAGATGTTTCTTGTGAAATAAATAAGCGA AATAATTCACCGTTGAGCCTCATGCCACTTGGGGGGAAAGCGACACGATC TCGGCGAATCGAACTTGACCTGCAGTTGCTGCACCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig14262:4361..7598-

>mRNA_H-elongata_contig14262.2949.1 ID=mRNA_H-elongata_contig14262.2949.1|Name=mRNA_H-elongata_contig14262.2949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig14262:4361..7598- (Himanthalia elongata Himel1 dioecious)
ATGCACACGCTTCACGCACATATCTGTATTTCTCATGTGACAACTGATGT
ACACCACGGGAGAACGATACAATATCCACACAGTGTTCCTTCGTGCTGTA
AACGCTTCCTAAAAAAAATGTTCCATTCTAAAACAACCGTGAAAAAGCTC
GAAATCGTAAAGTCGAAGCTGGTACGCGAGCCGACCTTGGGTATTCAACT
CGAGGAAGTGGCACGTGGTGGCGATGGTCGCGGTTTGGTGTTGGTGTCAG
GCGTTGAGCCAGGGGGAAACGCCGAGGCCTCAGGACAGATGCACACGCTT
CACGCACATATCTGTATTTCTCATGTGACAACTGATGTACACCACGGGAG
AACGATACAATATCCACACAGTGTTCCTTCGTGCTGTAAACGCTTCCTAA
AAAAAATGTTCCATTCTAAAACAACCGTGAAAAAGCTCGAAATCGTAAAG
TCGAAGCTGGTACGCGAGCCGACCTTGGGTATTCAACTCGAGGAAGTGGC
ACGTGGTGGCGATGGTCGCGGTTTGGTGTTGGTGTCAGGCGTTGAGCCAG
GGGGAAACGCCGAGGCCTCAGGACAGGTGTTTGTCGGGGATACCATATGC
TGGGTCGGGGTAGAACCCACGCGCATGACGAGGGTGGAGGCACTAGACTG
GGATCAAACCGTCAGCGCCCTTGGCACTTTCGCAGACGTCAGGTGTTTGT
CGGGGATACCATATGCTGGGTCGGGGTAGAACCCACGCGCATGACGAGGG
TGGAGGCACTAGACTGGGATCAAACCGTCAGCGCCCTTGGCACTTTCGCA
GACGTCAGAGAAATCACAATAGTGTGCAAGCGACTGGTGAAGCGGAAAAC
GATCAACGTGCAGTTCGAGCTTCAAGACAGCAACAAAGATTACGACATCA
AAACCGGCAGTAACCTTAGGGGAGAAATGATTCGGCTTGGCGTTCCAAGA
AATCACAATAGTGTGCAAGCGACTGGTGAAGCGGAAAACGATCAACGTGC
AGTTCGAGCTTCAAGACAGCAACAAAGATTACGACATCAAAACCGGCAGT
AACCTTAGGGGAGAAATGATTCGGCTTGGCGTTCCAGTGTACGACCCGAA
AACACTGCGATATGATCAACCATACGCGACTGGAAATTGCGCGGGAGAAG
GGATCTGCGGCACCTGCTTCGTGGAGGTGTACGACCCGAAAACACTGCGA
TATGATCAACCATACGCGACTGGAAATTGCGCGGGAGAAGGGATCTGCGG
CACCTGCTTCGTGGAGGTCCAGGAGGGAGCAGAACTCTTGACGCCCGCTG
ATCGTGAAGAAGAAATGCTTATCTCCAATGGGAATTTGCCACTCCGGTGG
CGTTTGTCGTGCAAAACGATTGTAGGCCGCGAGAATGTCGAGGGTACCGT
ACGGGTAAAAGCGGTACCCCAGACGGAGTGGCGGGAGCAGCGGGCGAACA
AATAGGTCCAGGAGGGAGCAGAACTCTTGACGCCCGCTGATCGTGAAGAA
GAAATGCTTATCTCCAATGGGAATTTGCCACTCCGGTGGCGTTTGTCGTG
CAAAACGATTGTAGGCCGCGAGAATGTCGAGGGTACCGTACGGGTAAAAG
CGGTACCCCAGACGGAGTGGCGGGAGCAGCGGGCGAACAAATAG
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