mRNA_H-elongata_contig142609.2947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142609.2947.1
Unique NamemRNA_H-elongata_contig142609.2947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: D7FW40_ECTSI (GMC_OxRdtase_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW40_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.010e-20
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGGSSCTNVMLYHRGE+ADYDAWGV GW GKDVLPYFKKAE
Sbjct:  139 KVLGGSSCTNVMLYHRGEEADYDAWGVDGWKGKDVLPYFKKAE 181
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BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A7S2Z4L9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z4L9_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.030e-13
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAEVS 171
            +VLGGSSCTNV+LY+RG   D+D W V GWA KDVL YFKKAE +
Sbjct:   92 KVLGGSSCTNVLLYNRGSAGDFDKWKVPGWASKDVLEYFKKAETN 136
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BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A699YBT2_HAELA (GMC_OxRdtase_N domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YBT2_HAELA)

HSP 1 Score: 65.5 bits (158), Expect = 6.300e-13
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            + LGGSSCTN  LYHRG  ADYD+WG++GW  +D++ +F  AE
Sbjct:    7 KALGGSSCTNATLYHRGSPADYDSWGLEGWKARDLVDWFISAE 49
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BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A5B8MG93_9CHLO (Glucose-methanol-choline oxidoreductase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MG93_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 6.680e-13
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGGSSCTNV+LY+RG   DYD W V GW+ +DVL YFKK+E
Sbjct:  130 KVLGGSSCTNVLLYNRGSARDYDGWKVPGWSSRDVLQYFKKSE 172
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BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A7S2KXY0_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXY0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.250e-12
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGGSSCTNVML+HRG   DYD W V GWA  DVLP+FK +E
Sbjct:  103 KVLGGSSCTNVMLHHRGTAKDYDDWCVPGWAAADVLPWFKASE 145
[Close]
BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A7Y6PXK7_9DELT (Uncharacterized protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7Y6PXK7_9DELT)

HSP 1 Score: 69.7 bits (169), Expect = 1.700e-12
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGG+SC N M+Y RG +A+YDAWG+ GWA  DVLPYFK++E
Sbjct:   83 KVLGGTSCLNAMVYIRGNRANYDAWGMPGWAYADVLPYFKRSE 125
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BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A7S4EP26_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EP26_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.330e-12
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGGSSCTNV L+HRG   DYD WG+ GW   DVLP+FK ++
Sbjct:  125 KVLGGSSCTNVCLHHRGSAQDYDDWGIPGWTASDVLPFFKASQ 167
[Close]
BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A1E7FBP9_9STRA (Glucose-methanol-choline oxidoreductase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBP9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.180e-12
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGGSSCTNV L+HRG   DYD WGV GW   DVLP+FK ++
Sbjct:   79 KVLGGSSCTNVCLHHRGSAQDYDDWGVPGWKAADVLPFFKASQ 121
[Close]
BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: A0A448ZTH3_9STRA (GMC_OxRdtase_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.180e-12
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPYFKKAE 165
            +VLGGSSCTNV L+HRG   DYD WG+ GW   DVLP+FK ++
Sbjct:  125 KVLGGSSCTNVCLHHRGSAQDYDDWGIPGWKASDVLPFFKASQ 167
[Close]
BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Match: R1FBM9_EMIHU (Choline dehydrogenase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FBM9_EMIHU)

HSP 1 Score: 68.6 bits (166), Expect = 4.350e-12
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   37 QVLGGSSCTNVMLYHRGEKADYDAW---GVKGWAGKDVLPYFKKAE 165
            + LGGSS TNVMLYHRG  ADYDAW   G +GW  KDVLPY+ + E
Sbjct:  131 KALGGSSVTNVMLYHRGSPADYDAWEEAGARGWGAKDVLPYYLRVE 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142609.2947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW40_ECTSI6.010e-2090.70GMC_OxRdtase_N domain-containing protein n=1 Tax=E... [more]
A0A7S2Z4L9_9CHLO1.030e-1368.89Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A699YBT2_HAELA6.300e-1358.14GMC_OxRdtase_N domain-containing protein (Fragment... [more]
A0A5B8MG93_9CHLO6.680e-1367.44Glucose-methanol-choline oxidoreductase n=1 Tax=Ch... [more]
A0A7S2KXY0_9STRA1.250e-1269.77Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7Y6PXK7_9DELT1.700e-1265.12Uncharacterized protein n=1 Tax=Kofleriaceae bacte... [more]
A0A7S4EP26_9STRA2.330e-1262.79Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FBP9_9STRA3.180e-1265.12Glucose-methanol-choline oxidoreductase (Fragment)... [more]
A0A448ZTH3_9STRA3.180e-1262.79GMC_OxRdtase_N domain-containing protein n=1 Tax=P... [more]
R1FBM9_EMIHU4.350e-1265.22Choline dehydrogenase n=1 Tax=Emiliania huxleyi Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142609contigH-elongata_contig142609:1282..1455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D7FW40
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
Ec32 ortholog descriptionGlucose-methanol-choline oxidoreductase, C-terminal
Ec32 orthologEc-01_003260.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.415484-CDS-H-elongata_contig142609:1281..14551622929846.415484-CDS-H-elongata_contig142609:1281..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142609 1282..1455 -
1691679181.2866697-CDS-H-elongata_contig142609:1281..14551691679181.2866697-CDS-H-elongata_contig142609:1281..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142609 1282..1455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142609.2947.1prot_H-elongata_contig142609.2947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142609 1282..1455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142609.2947.1

>prot_H-elongata_contig142609.2947.1 ID=prot_H-elongata_contig142609.2947.1|Name=mRNA_H-elongata_contig142609.2947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
NRSTYSVLSSQKQVLGGSSCTNVMLYHRGEKADYDAWGVKGWAGKDVLPY
FKKAEVSP
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mRNA from alignment at H-elongata_contig142609:1282..1455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142609.2947.1 ID=mRNA_H-elongata_contig142609.2947.1|Name=mRNA_H-elongata_contig142609.2947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig142609:1282..1455- (Himanthalia elongata Himel1 dioecious)
AACCGATCAACGTACTCTGTACTCTCCTCTCAAAAACAGGTTCTCGGGGG
GTCGAGCTGTACGAACGTTATGCTATACCATCGAGGAGAGAAAGCAGACT
ACGATGCATGGGGAGTGAAGGGGTGGGCTGGCAAGGATGTTCTCCCGTAC
TTCAAGAAAGCCGAGGTAAGCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig142609:1282..1455-

>mRNA_H-elongata_contig142609.2947.1 ID=mRNA_H-elongata_contig142609.2947.1|Name=mRNA_H-elongata_contig142609.2947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig142609:1282..1455- (Himanthalia elongata Himel1 dioecious)
AACCGATCAACGTACTCTGTACTCTCCTCTCAAAAACAGGTTCTCGGGGG
GTCGAGCTGTACGAACGTTATGCTATACCATCGAGGAGAGAAAGCAGACT
ACGATGCATGGGGAGTGAAGGGGTGGGCTGGCAAGGATGTTCTCCCGTAC
TTCAAGAAAGCCGAGGTAAGCCCGAACCGATCAACGTACTCTGTACTCTC
CTCTCAAAAACAGGTTCTCGGGGGGTCGAGCTGTACGAACGTTATGCTAT
ACCATCGAGGAGAGAAAGCAGACTACGATGCATGGGGAGTGAAGGGGTGG
GCTGGCAAGGATGTTCTCCCGTACTTCAAGAAAGCCGAGGTAAGCCCG
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