mRNA_H-elongata_contig142555.2944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142555.2944.1
Unique NamemRNA_H-elongata_contig142555.2944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.140e-12
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   79 RDVRLPATMAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLKG 264
            R  ++P T+A VD   L AL+  T+GD W    GWCT  ELQEW+GV VN  GRV  L L+G
Sbjct:   14 RTPKVPFTLAPVDYGALTALYRLTQGDGWTRRDGWCTPVELQEWFGVEVNEQGRVVKLDLRG 75          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.440e-10
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   79 RDVRLPATMAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLKG 264
            R  ++P T+A  D   L AL+  T+GD W +  GWCT  +LQEW+GV VN  GRV  L L+G
Sbjct:   16 RTPKVPFTLAPRDYGALAALYHLTQGDGWIHRDGWCTPVDLQEWFGVDVNEQGRVVKLDLRG 77          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 3.030e-9
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  106 AQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLKG 264
            AQ DR  L AL+ AT G +W NN+ W TDA L EWYGV V+A+GRV  L L G
Sbjct:  480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVIRLELSG 532          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.140e-9
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  103 MAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVL 258
            M   DR  L ALF +T G  W++N  W TDA+L +WYGV+VN DGRV+ L L
Sbjct:    1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRL 52          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: A0A7X4J859_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4J859_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-8
Identity = 29/55 (52.73%), Postives = 33/55 (60.00%), Query Frame = 1
Query:  100 TMAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLKG 264
            T+   DR  L AL+ AT G +W NNK W TDA L EWYGV  +  GRV  L L G
Sbjct:  314 TVQNPDRAALLALYNATDGPNWVNNKNWLTDAPLGEWYGVETDVSGRVVRLDLGG 368          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: A0A7X3WE75_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WE75_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 9.550e-8
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  115 DREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLK 261
            DR  L AL+++T G +W+ +  W TD  L  WYGV VNA GRV +LVL+
Sbjct:  282 DRSSLIALYISTDGGNWKQSANWLTDEPLSTWYGVGVNAAGRVDSLVLE 330          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-7
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:  103 MAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVL 258
            MA  D + L AL+ AT G +W+ N+ W TD +L +WYGV +N  GRV  L L
Sbjct:    1 MAATDYDALVALYHATDGANWKQNRNWITDTDLSQWYGVELNDQGRVACLNL 52          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: A0A7X4FQ12_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X4FQ12_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 3.230e-7
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  106 AQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVL 258
            A  DR  L A++ AT+G  W NN+ W +DA L +WYGV  +ADGRV  L L
Sbjct:  320 AAKDRAILEAVYDATEGRFWRNNRNWLSDAPLGDWYGVDTDADGRVVGLDL 370          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.270e-7
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 1
Query:   94 PATMAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLK 261
            P   A+ DR  L  LF  TKG  W  +  W T + L EWYGV VNA+GRV  L L+
Sbjct:  310 PVRDARTDRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDLE 365          
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.440e-7
Identity = 27/52 (51.92%), Postives = 30/52 (57.69%), Query Frame = 1
Query:  103 MAQVDREGLRALFLATKGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVL 258
            MA  DR  L ALF AT+G  W  +  W T   L  WYGV VNA+GRV  L L
Sbjct:    1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSL 52          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142555.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FPS8_ECTSI8.140e-1251.61Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE3.440e-1048.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1AS51_9GAMM3.030e-958.49Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
D7FHA4_ECTSI4.140e-953.85Hypothetical leucine rich repeat protein (Partial)... [more]
A0A7X4J859_9BACT1.460e-852.73Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A7X3WE75_9BACT9.550e-851.02BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
D8LLG1_ECTSI1.290e-748.08LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A7X4FQ12_9BACT3.230e-750.98Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
D7G450_ECTSI4.270e-748.21Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FUH5_ECTSI4.440e-751.92Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142555contigH-elongata_contig142555:224..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D7FPS8
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.262385-CDS-H-elongata_contig142555:223..3981622929846.262385-CDS-H-elongata_contig142555:223..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142555 224..398 -
1691679181.2194355-CDS-H-elongata_contig142555:223..3981691679181.2194355-CDS-H-elongata_contig142555:223..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142555 224..398 -
1622929846.2761319-CDS-H-elongata_contig142555:554..6431622929846.2761319-CDS-H-elongata_contig142555:554..643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142555 555..643 -
1691679181.2310958-CDS-H-elongata_contig142555:554..6431691679181.2310958-CDS-H-elongata_contig142555:554..643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142555 555..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142555.2944.1prot_H-elongata_contig142555.2944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142555 224..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142555.2944.1

>prot_H-elongata_contig142555.2944.1 ID=prot_H-elongata_contig142555.2944.1|Name=mRNA_H-elongata_contig142555.2944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
PNSEVLLRQFFSSSHLEEQFLRGNQLRDVRLPATMAQVDREGLRALFLAT
KGDHWENNKGWCTDAELQEWYGVFVNADGRVQALVLKG
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mRNA from alignment at H-elongata_contig142555:224..643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142555.2944.1 ID=mRNA_H-elongata_contig142555.2944.1|Name=mRNA_H-elongata_contig142555.2944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig142555:224..643- (Himanthalia elongata Himel1 dioecious)
CCGAATTCCGAAGTCCTCCTGCGCCAATTTTTTTCATCCTCACATCTCGA GGAGCAATTTTTGAGGGGCAATCAATTACGCGACGTACGGTAAGCGTTTT CAGTTAAATTCCATGCCGCCGTTTTGTCCGCTCCTTCTCCTCTGTCTTGG TATTTTTTCCAATGGATGACTACACAGTAGGCTTTACATGGCTTTGCTCT TTTCTTCGGCTTTACTTCCCTCGATGGGGCCAATCAATCCCCTAGGTTAC CAGCAACGATGGCTCAAGTCGATCGCGAGGGACTTCGTGCACTGTTTTTG GCAACGAAAGGGGACCACTGGGAAAACAACAAAGGCTGGTGCACAGATGC AGAGTTACAGGAATGGTATGGAGTTTTTGTCAACGCGGATGGACGGGTTC AGGCACTAGTTTTAAAAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig142555:224..643-

>mRNA_H-elongata_contig142555.2944.1 ID=mRNA_H-elongata_contig142555.2944.1|Name=mRNA_H-elongata_contig142555.2944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig142555:224..643- (Himanthalia elongata Himel1 dioecious)
CCGAATTCCGAAGTCCTCCTGCGCCAATTTTTTTCATCCTCACATCTCGA
GGAGCAATTTTTGAGGGGCAATCAATTACGCGACGTACGCCGAATTCCGA
AGTCCTCCTGCGCCAATTTTTTTCATCCTCACATCTCGAGGAGCAATTTT
TGAGGGGCAATCAATTACGCGACGTACGGTTACCAGCAACGATGGCTCAA
GTCGATCGCGAGGGACTTCGTGCACTGTTTTTGGCAACGAAAGGGGACCA
CTGGGAAAACAACAAAGGCTGGTGCACAGATGCAGAGTTACAGGAATGGT
ATGGAGTTTTTGTCAACGCGGATGGACGGGTTCAGGCACTAGTTTTAAAA
GGTGTTACCAGCAACGATGGCTCAAGTCGATCGCGAGGGACTTCGTGCAC
TGTTTTTGGCAACGAAAGGGGACCACTGGGAAAACAACAAAGGCTGGTGC
ACAGATGCAGAGTTACAGGAATGGTATGGAGTTTTTGTCAACGCGGATGG
ACGGGTTCAGGCACTAGTTTTAAAAGGT
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