prot_H-elongata_contig142505.2941.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig142505.2941.1
Unique Nameprot_H-elongata_contig142505.2941.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: D7FM70_ECTSI (LisH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM70_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.970e-23
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFS 47
            NKDVTTLEWNREGTLLATGSYDGVARIWS+DGALQHTL+AH+GPIFS
Sbjct:  331 NKDVTTLEWNREGTLLATGSYDGVARIWSQDGALQHTLEAHEGPIFS 377          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A6I9NRT2_9TELE (F-box-like/WD repeat-containing protein TBL1XR1 n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NRT2_9TELE)

HSP 1 Score: 91.3 bits (225), Expect = 1.590e-22
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   51 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 102          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: UPI001560D82B (F-box-like/WD repeat-containing protein TBL1XR1 n=1 Tax=Pan paniscus TaxID=9597 RepID=UPI001560D82B)

HSP 1 Score: 91.3 bits (225), Expect = 3.200e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:  138 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 189          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A8C1HDT8_CYPCA (Transducin (beta)-like 1 X-linked receptor 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HDT8_CYPCA)

HSP 1 Score: 91.3 bits (225), Expect = 4.470e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   81 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 132          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A1B0GVH3_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A1B0GVH3_HUMAN)

HSP 1 Score: 91.3 bits (225), Expect = 4.780e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   94 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 145          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A4U1F5S0_MONMO (ANAPC4_WD40 domain-containing protein (Fragment) n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A4U1F5S0_MONMO)

HSP 1 Score: 91.3 bits (225), Expect = 5.350e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:  205 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 256          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A834ZW08_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZW08_9MAGN)

HSP 1 Score: 90.5 bits (223), Expect = 5.880e-21
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    2 KDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            KDVT L+WN EGTLLATGSYDG ARIWS+DG L+ TL+ H GPIFSLKWN+
Sbjct:   86 KDVTILDWNGEGTLLATGSYDGQARIWSRDGELRSTLNKHKGPIFSLKWNK 136          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A4Z2CJ93_9TELE (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2CJ93_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 7.820e-21
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN +GTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   84 NKDVTSLDWNSDGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 135          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A7L3HEM2_9PASS (TBL1R protein (Fragment) n=1 Tax=Buphagus erythrorhynchus TaxID=245048 RepID=A0A7L3HEM2_9PASS)

HSP 1 Score: 91.3 bits (225), Expect = 1.050e-20
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 52
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   42 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 93          
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A835YN21_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN21_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.230e-20
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFS 47
            NKDVTTLEWNREG LLATGSYDGVARIWSK+G+L H L+AH+GPIFS
Sbjct:  211 NKDVTTLEWNREGALLATGSYDGVARIWSKEGSLLHMLEAHEGPIFS 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM70_ECTSI1.970e-2393.62LisH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6I9NRT2_9TELE1.590e-2275.00F-box-like/WD repeat-containing protein TBL1XR1 n=... [more]
UPI001560D82B3.200e-2175.00F-box-like/WD repeat-containing protein TBL1XR1 n=... [more]
A0A8C1HDT8_CYPCA4.470e-2175.00Transducin (beta)-like 1 X-linked receptor 1b n=1 ... [more]
A0A1B0GVH3_HUMAN4.780e-2175.00F-box-like/WD repeat-containing protein TBL1XR1 (F... [more]
A0A4U1F5S0_MONMO5.350e-2175.00ANAPC4_WD40 domain-containing protein (Fragment) n... [more]
A0A834ZW08_9MAGN5.880e-2176.47Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A4Z2CJ93_9TELE7.820e-2173.08Uncharacterized protein n=1 Tax=Takifugu bimaculat... [more]
A0A7L3HEM2_9PASS1.050e-2075.00TBL1R protein (Fragment) n=1 Tax=Buphagus erythror... [more]
A0A835YN21_9STRA1.230e-2085.11WD40-repeat-containing domain protein n=1 Tax=Trib... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 2..52
e-value: 4.0E-6
score: 27.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..53
e-value: 2.8E-19
score: 71.0
NoneNo IPR availablePANTHERPTHR22846WD40 REPEAT PROTEINcoord: 1..53
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..29
score: 11.945
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..38
score: 10.364
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142505contigH-elongata_contig142505:369..1324 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142505.2941.1mRNA_H-elongata_contig142505.2941.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig142505 369..1324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig142505.2941.1 ID=prot_H-elongata_contig142505.2941.1|Name=mRNA_H-elongata_contig142505.2941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKW
NET
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf