mRNA_H-elongata_contig142505.2941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142505.2941.1
Unique NamemRNA_H-elongata_contig142505.2941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: D7FM70_ECTSI (LisH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM70_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.970e-23
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFS 141
            NKDVTTLEWNREGTLLATGSYDGVARIWS+DGALQHTL+AH+GPIFS
Sbjct:  331 NKDVTTLEWNREGTLLATGSYDGVARIWSQDGALQHTLEAHEGPIFS 377
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BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A6I9NRT2_9TELE (F-box-like/WD repeat-containing protein TBL1XR1 n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NRT2_9TELE)

HSP 1 Score: 91.3 bits (225), Expect = 1.590e-22
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   51 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 102
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BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: UPI001560D82B (F-box-like/WD repeat-containing protein TBL1XR1 n=1 Tax=Pan paniscus TaxID=9597 RepID=UPI001560D82B)

HSP 1 Score: 91.3 bits (225), Expect = 3.200e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:  138 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 189
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A8C1HDT8_CYPCA (Transducin (beta)-like 1 X-linked receptor 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HDT8_CYPCA)

HSP 1 Score: 91.3 bits (225), Expect = 4.470e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   81 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 132
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A1B0GVH3_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A1B0GVH3_HUMAN)

HSP 1 Score: 91.3 bits (225), Expect = 4.780e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   94 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 145
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A4U1F5S0_MONMO (ANAPC4_WD40 domain-containing protein (Fragment) n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A4U1F5S0_MONMO)

HSP 1 Score: 91.3 bits (225), Expect = 5.350e-21
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:  205 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 256
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A834ZW08_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZW08_9MAGN)

HSP 1 Score: 90.5 bits (223), Expect = 5.880e-21
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 KDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            KDVT L+WN EGTLLATGSYDG ARIWS+DG L+ TL+ H GPIFSLKWN+
Sbjct:   86 KDVTILDWNGEGTLLATGSYDGQARIWSRDGELRSTLNKHKGPIFSLKWNK 136
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A4Z2CJ93_9TELE (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2CJ93_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 7.820e-21
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN +GTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   84 NKDVTSLDWNSDGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 135
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A7L3HEM2_9PASS (TBL1R protein (Fragment) n=1 Tax=Buphagus erythrorhynchus TaxID=245048 RepID=A0A7L3HEM2_9PASS)

HSP 1 Score: 91.3 bits (225), Expect = 1.050e-20
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKWNE 156
            NKDVT+L+WN EGTLLATGSYDG ARIW+KDG L  TL  H GPIF+LKWN+
Sbjct:   42 NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNK 93
[Close]
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Match: A0A835YN21_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN21_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.230e-20
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFS 141
            NKDVTTLEWNREG LLATGSYDGVARIWSK+G+L H L+AH+GPIFS
Sbjct:  211 NKDVTTLEWNREGALLATGSYDGVARIWSKEGSLLHMLEAHEGPIFS 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142505.2941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM70_ECTSI1.970e-2393.62LisH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6I9NRT2_9TELE1.590e-2275.00F-box-like/WD repeat-containing protein TBL1XR1 n=... [more]
UPI001560D82B3.200e-2175.00F-box-like/WD repeat-containing protein TBL1XR1 n=... [more]
A0A8C1HDT8_CYPCA4.470e-2175.00Transducin (beta)-like 1 X-linked receptor 1b n=1 ... [more]
A0A1B0GVH3_HUMAN4.780e-2175.00F-box-like/WD repeat-containing protein TBL1XR1 (F... [more]
A0A4U1F5S0_MONMO5.350e-2175.00ANAPC4_WD40 domain-containing protein (Fragment) n... [more]
A0A834ZW08_9MAGN5.880e-2176.47Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A4Z2CJ93_9TELE7.820e-2173.08Uncharacterized protein n=1 Tax=Takifugu bimaculat... [more]
A0A7L3HEM2_9PASS1.050e-2075.00TBL1R protein (Fragment) n=1 Tax=Buphagus erythror... [more]
A0A835YN21_9STRA1.230e-2085.11WD40-repeat-containing domain protein n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142505contigH-elongata_contig142505:369..1324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue9.3e-19
Seed eggNOG ortholog2880.D7FM70
Preferred nameTBL1XR1
KEGG koko:K04508
KEGG Pathwayko04013,ko04310,map04013,map04310
GOsGO:0000118,GO:0000122,GO:0000151,GO:0001067,GO:0001654,GO:0001745,GO:0001932,GO:0001933,GO:0002009,GO:0002021,GO:0002165,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006629,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007219,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007600,GO:0007605,GO:0008013,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008587,GO:0008593,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0014070,GO:0015630,GO:0016042,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0017053,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019725,GO:0019904,GO:0019941,GO:0022008,GO:0022416,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030177,GO:0030182,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031461,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035264,GO:0035295,GO:0035601,GO:0036211,GO:0038127,GO:0040007,GO:0040008,GO:0042058,GO:0042221,GO:0042325,GO:0042326,GO:0042393,GO:0042461,GO:0042592,GO:0042675,GO:0042676,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0043523,GO:0043524,GO:0043627,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045165,GO:0045444,GO:0045570,GO:0045572,GO:0045747,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046328,GO:0046329,GO:0046530,GO:0046620,GO:0046622,GO:0047485,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048592,GO:0048638,GO:0048639,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050872,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051603,GO:0051716,GO:0060249,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0060612,GO:0060613,GO:0060828,GO:0061448,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0070302,GO:0070303,GO:0070491,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090207,GO:0090263,GO:0090311,GO:0090312,GO:0090596,GO:0097159,GO:0098732,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0104004,GO:0140110,GO:1901184,GO:1901214,GO:1901215,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001252
EggNOG free text desc.transcription corepressor activity
EggNOG OGsCOG2319@1,KOG0273@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.0259545-CDS-H-elongata_contig142505:368..4721622929846.0259545-CDS-H-elongata_contig142505:368..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142505 369..472 -
1691679181.1148207-CDS-H-elongata_contig142505:368..4721691679181.1148207-CDS-H-elongata_contig142505:368..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142505 369..472 -
1622929846.0421047-CDS-H-elongata_contig142505:1269..13241622929846.0421047-CDS-H-elongata_contig142505:1269..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142505 1270..1324 -
1691679181.128864-CDS-H-elongata_contig142505:1269..13241691679181.128864-CDS-H-elongata_contig142505:1269..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142505 1270..1324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142505.2941.1prot_H-elongata_contig142505.2941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142505 369..1324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142505.2941.1

>prot_H-elongata_contig142505.2941.1 ID=prot_H-elongata_contig142505.2941.1|Name=mRNA_H-elongata_contig142505.2941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
NKDVTTLEWNREGTLLATGSYDGVARIWSKDGALQHTLDAHDGPIFSLKW
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mRNA from alignment at H-elongata_contig142505:369..1324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142505.2941.1 ID=mRNA_H-elongata_contig142505.2941.1|Name=mRNA_H-elongata_contig142505.2941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig142505:369..1324- (Himanthalia elongata Himel1 dioecious)
AACAAGGACGTGACCACTCTAGAATGGAATCGAGAAGGAACCCTCCTGGC
CACTGGTATGTTCTATGTTCTCTATGTTGTATTAATAGGGTATTATTGTA
GTTATGTTAATTATACGGCACTCTTTCTAAAAATCCATTGTGTTCGTGTC
GTGAAAGGTGGGACTCGCTTCTGTATTACAAATCCGTAACCGTAACCGTA
ACCTTCGTAATAAGTAATACCGCATCCTAACCCTAACCCTAACCTTCGTC
CTGTAGGAAGAACTTGCAGTGTGTTGGCTCTCTGGTAGTATTAAGAGGTG
AATATTAACCCTAACCTTAACCCTAACCCTAACCCTGTGTTTTGACCGTG
AGGGAAAATTTTACATTAATAGAGAAGGCATACCAGGTACAGTACGATAA
AGTATATAATAGGAGACGAGACGAGAGAAGAGGAAAGTACAAAATAGTAT
AGTATATAGTATCTCGTATGTATTATCTCGTATGTATTATCTAGTACCTA
GTATGTATTATATAGGATGTATTATATAGGATGTATTATCTAGGATGTAT
TATCTAGGATTTATTATCTATTAACAGTTTATCCCGAGCAAGGTGAGGGT
GAGATAGATGGAGGGGCGTTAGTGCCCTAACCCTCCCCCTCCCCCAATCG
AACAATCGAACAATCGAACAAGCTGTCCCTGTTGTACCTTGTTTTCAGTT
GTTACTGTTTTTTTGTGCCAATGAAAAGTCTCATAATACAGCGTACGTAG
TACTAAATACTAAATAGTGTAATATACTATAATCGTATCAATTTAAATTA
TTAAACCAATACAATGCCTAATATGCCTAATATCTAATGCCAATATACGA
AGGGTCCTACGACGGCGTGGCGCGCATTTGGTCAAAAGATGGGGCGCTGC
AGCACACGCTAGATGCCCACGATGGACCAATATTCTCTCTTAAATGGAAC
GAAACG
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Coding sequence (CDS) from alignment at H-elongata_contig142505:369..1324-

>mRNA_H-elongata_contig142505.2941.1 ID=mRNA_H-elongata_contig142505.2941.1|Name=mRNA_H-elongata_contig142505.2941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig142505:369..1324- (Himanthalia elongata Himel1 dioecious)
AACAAGGACGTGACCACTCTAGAATGGAATCGAGAAGGAACCCTCCTGGC
CACTGAACAAGGACGTGACCACTCTAGAATGGAATCGAGAAGGAACCCTC
CTGGCCACTGGGTCCTACGACGGCGTGGCGCGCATTTGGTCAAAAGATGG
GGCGCTGCAGCACACGCTAGATGCCCACGATGGACCAATATTCTCTCTTA
AATGGAACGAAACGGGTCCTACGACGGCGTGGCGCGCATTTGGTCAAAAG
ATGGGGCGCTGCAGCACACGCTAGATGCCCACGATGGACCAATATTCTCT
CTTAAATGGAACGAAACG
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