mRNA_H-elongata_contig142432.2936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142432.2936.1
Unique NamemRNA_H-elongata_contig142432.2936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A6H5JBD2_9PHAE (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.910e-18
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            W FLY++ EEK LDVVV E +DTPAMNP TTP+L+LDLWEH+YYLD
Sbjct:  174 WVFLYFNHEEKTLDVVVLEYEDTPAMNPNTTPILLLDLWEHAYYLD 219
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BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A836CJJ6_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.020e-10
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYL 135
            W FLY++ + + L++  T   DTPAM+P+  P+L+LD+WEH+YYL
Sbjct:  165 WTFLYFNKKARTLEITNTAGHDTPAMDPEKAPLLLLDMWEHAYYL 209
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BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A2P8R3N0_9PROT (Superoxide dismutase n=1 Tax=Campylobacter blaseri TaxID=2042961 RepID=A0A2P8R3N0_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 1.170e-8
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            W +L YD E K L+++ T N DTP    K  P+LV+D+WEH+YYLD
Sbjct:  116 WCWLTYDPETKKLEIIQTSNADTPVTQNKV-PLLVVDVWEHAYYLD 160
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BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A268TZC1_9HELI (Superoxide dismutase n=1 Tax=Helicobacter sp. 13S00401-1 TaxID=1905758 RepID=A0A268TZC1_9HELI)

HSP 1 Score: 54.3 bits (129), Expect = 1.750e-7
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            W +L Y+ E K+L++V T N  TP    K  P+LV+D+WEHSYY+D
Sbjct:  130 WTWLVYNLESKSLEIVQTSNAQTPIKEHKV-PLLVVDVWEHSYYID 174
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BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A6L5WGD3_9PROT (Superoxide dismutase n=1 Tax=Campylobacter portucalensis TaxID=2608384 RepID=A0A6L5WGD3_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 2.310e-7
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            W +L Y+ + KNL+++ T N  TP  + K  P+LV+D+WEH+YYLD
Sbjct:  116 WCWLVYNPKNKNLEIIQTSNAATPVTDNKI-PLLVVDVWEHAYYLD 160
[Close]
BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A6G5QIY2_9PROT (Superoxide dismutase n=5 Tax=Campylobacter mucosalis TaxID=202 RepID=A0A6G5QIY2_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 2.310e-7
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            WA+L YD   K L++V T N  TP  + K  P+LV+D+WEH+YY+D
Sbjct:  116 WAWLVYDPSAKKLEIVQTSNAATPVNDGKV-PLLVVDVWEHAYYID 160
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BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A7S2Y0M5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0M5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.540e-7
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYL 135
            W +L Y++   + ++V T N D+P M     P++V+D+WEH+YYL
Sbjct:   40 WTWLVYNTSHNSFEIVSTPNQDSPLMEAGKVPLVVVDMWEHAYYL 84
[Close]
BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A7S3RJC8_EMIHU (Superoxide dismutase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RJC8_EMIHU)

HSP 1 Score: 53.5 bits (127), Expect = 3.870e-7
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYL 135
            WA+L  D     L V  T N DTPAM+  T P+L +D+WEH+YYL
Sbjct:  160 WAWLALDRRSDKLVVQSTPNQDTPAMDASTVPLLGIDVWEHAYYL 204
[Close]
BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A3D8IK44_9HELI (Superoxide dismutase n=1 Tax=Helicobacter sp. MIT 14-3879 TaxID=2040649 RepID=A0A3D8IK44_9HELI)

HSP 1 Score: 53.1 bits (126), Expect = 4.320e-7
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            W ++ Y++  K L++V T N  TP ++ K  P+LV+D+WEH+YY+D
Sbjct:  120 WCWVVYNTSTKKLEIVQTSNASTPVVDKKV-PILVVDVWEHAYYID 164
[Close]
BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Match: A0A268TNJ9_9HELI (Superoxide dismutase n=1 Tax=Helicobacter sp. 11S02629-2 TaxID=1476195 RepID=A0A268TNJ9_9HELI)

HSP 1 Score: 53.1 bits (126), Expect = 4.690e-7
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD 138
            WA+L Y+ + K+L++V T N  TP    K  P+LV+D+WEHSYY+D
Sbjct:  130 WAWLVYNLDTKSLELVQTTNAQTPITEHKV-PLLVVDVWEHSYYID 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142432.2936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBD2_9PHAE9.910e-1873.91Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. C... [more]
A0A836CJJ6_9STRA5.020e-1048.89Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
A0A2P8R3N0_9PROT1.170e-852.17Superoxide dismutase n=1 Tax=Campylobacter blaseri... [more]
A0A268TZC1_9HELI1.750e-750.00Superoxide dismutase n=1 Tax=Helicobacter sp. 13S0... [more]
A0A6L5WGD3_9PROT2.310e-747.83Superoxide dismutase n=1 Tax=Campylobacter portuca... [more]
A0A6G5QIY2_9PROT2.310e-750.00Superoxide dismutase n=5 Tax=Campylobacter mucosal... [more]
A0A7S2Y0M5_9STRA3.540e-740.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3RJC8_EMIHU3.870e-751.11Superoxide dismutase n=2 Tax=Emiliania huxleyi Tax... [more]
A0A3D8IK44_9HELI4.320e-743.48Superoxide dismutase n=1 Tax=Helicobacter sp. MIT ... [more]
A0A268TNJ9_9HELI4.690e-750.00Superoxide dismutase n=1 Tax=Helicobacter sp. 11S0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142432contigH-elongata_contig142432:1459..1596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSuperoxide dismutase, Destroys radicals which are normally produced within the cells and which are t
Ec32 orthologEc-08_003590.1
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.6905375-CDS-H-elongata_contig142432:1458..15961622929845.6905375-CDS-H-elongata_contig142432:1458..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142432 1459..1596 +
1691679181.0009305-CDS-H-elongata_contig142432:1458..15961691679181.0009305-CDS-H-elongata_contig142432:1458..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142432 1459..1596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142432.2936.1prot_H-elongata_contig142432.2936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142432 1459..1596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142432.2936.1

>prot_H-elongata_contig142432.2936.1 ID=prot_H-elongata_contig142432.2936.1|Name=mRNA_H-elongata_contig142432.2936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
WAFLYYDSEEKNLDVVVTENDDTPAMNPKTTPVLVLDLWEHSYYLD
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mRNA from alignment at H-elongata_contig142432:1459..1596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142432.2936.1 ID=mRNA_H-elongata_contig142432.2936.1|Name=mRNA_H-elongata_contig142432.2936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig142432:1459..1596+ (Himanthalia elongata Himel1 dioecious)
TGGGCTTTTCTGTACTACGACAGCGAAGAGAAGAACCTTGATGTGGTGGT
GACGGAGAACGACGACACGCCTGCCATGAACCCGAAGACAACTCCAGTCC
TGGTGTTAGATCTGTGGGAGCACTCCTACTACCTAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig142432:1459..1596+

>mRNA_H-elongata_contig142432.2936.1 ID=mRNA_H-elongata_contig142432.2936.1|Name=mRNA_H-elongata_contig142432.2936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig142432:1459..1596+ (Himanthalia elongata Himel1 dioecious)
TGGGCTTTTCTGTACTACGACAGCGAAGAGAAGAACCTTGATGTGGTGGT
GACGGAGAACGACGACACGCCTGCCATGAACCCGAAGACAACTCCAGTCC
TGGTGTTAGATCTGTGGGAGCACTCCTACTACCTAGACTGGGCTTTTCTG
TACTACGACAGCGAAGAGAAGAACCTTGATGTGGTGGTGACGGAGAACGA
CGACACGCCTGCCATGAACCCGAAGACAACTCCAGTCCTGGTGTTAGATC
TGTGGGAGCACTCCTACTACCTAGAC
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