mRNA_H-elongata_contig142432.2935.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142432.2935.1
Unique NamemRNA_H-elongata_contig142432.2935.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142432.2935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142432contigH-elongata_contig142432:538..881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.6428137-CDS-H-elongata_contig142432:537..8791622929845.6428137-CDS-H-elongata_contig142432:537..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142432 538..879 +
1691679180.9918334-CDS-H-elongata_contig142432:537..8791691679180.9918334-CDS-H-elongata_contig142432:537..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142432 538..879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142432.2935.1prot_H-elongata_contig142432.2935.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142432 538..879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142432.2935.1

>prot_H-elongata_contig142432.2935.1 ID=prot_H-elongata_contig142432.2935.1|Name=mRNA_H-elongata_contig142432.2935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
LKRLTVDVARKPARAGWYCTYQLRVPSLRPRFTSCCCTSYSKRAKNIFAI
FLQTFQAVREGRPVAYPSEGDRPRLLIKCFCFPSPFPFPVPPLPLRFLRP
VLFFKYIFGHSCDA
back to top

mRNA from alignment at H-elongata_contig142432:538..881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142432.2935.1 ID=mRNA_H-elongata_contig142432.2935.1|Name=mRNA_H-elongata_contig142432.2935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=344bp|location=Sequence derived from alignment at H-elongata_contig142432:538..881+ (Himanthalia elongata Himel1 dioecious)
CTGAAAAGGTTGACAGTCGATGTAGCGCGCAAGCCAGCGAGGGCCGGTTG
GTACTGCACGTACCAGCTGCGAGTGCCGAGTCTGAGGCCTCGCTTTACAA
GTTGCTGTTGTACGAGCTATTCCAAGCGCGCCAAGAATATTTTTGCAATA
TTTTTGCAAACCTTTCAAGCCGTGCGTGAAGGACGACCCGTTGCTTATCC
AAGCGAGGGTGACAGACCTCGTCTATTAATAAAGTGTTTTTGTTTTCCCT
CCCCTTTTCCTTTTCCCGTCCCCCCCCTCCCCCTCCGTTTTCTTCGCCCC
GTCTTGTTTTTCAAATATATTTTTGGACATTCTTGCGACGCCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142432:538..881+

>mRNA_H-elongata_contig142432.2935.1 ID=mRNA_H-elongata_contig142432.2935.1|Name=mRNA_H-elongata_contig142432.2935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig142432:538..881+ (Himanthalia elongata Himel1 dioecious)
CTGAAAAGGTTGACAGTCGATGTAGCGCGCAAGCCAGCGAGGGCCGGTTG
GTACTGCACGTACCAGCTGCGAGTGCCGAGTCTGAGGCCTCGCTTTACAA
GTTGCTGTTGTACGAGCTATTCCAAGCGCGCCAAGAATATTTTTGCAATA
TTTTTGCAAACCTTTCAAGCCGTGCGTGAAGGACGACCCGTTGCTTATCC
AAGCGAGGGTGACAGACCTCGTCTATTAATAAAGTGTTTTTGTTTTCCCT
CCCCTTTTCCTTTTCCCGTCCCCCCCCTCCCCCTCCGTTTTCTTCGCCCC
GTCTTGTTTTTCAAATATATTTTTGGACATTCTTGCGACGCCCTGAAAAG
GTTGACAGTCGATGTAGCGCGCAAGCCAGCGAGGGCCGGTTGGTACTGCA
CGTACCAGCTGCGAGTGCCGAGTCTGAGGCCTCGCTTTACAAGTTGCTGT
TGTACGAGCTATTCCAAGCGCGCCAAGAATATTTTTGCAATATTTTTGCA
AACCTTTCAAGCCGTGCGTGAAGGACGACCCGTTGCTTATCCAAGCGAGG
GTGACAGACCTCGTCTATTAATAAAGTGTTTTTGTTTTCCCTCCCCTTTT
CCTTTTCCCGTCCCCCCCCTCCCCCTCCGTTTTCTTCGCCCCGTCTTGTT
TTTCAAATATATTTTTGGACATTCTTGCGACGCC
back to top