mRNA_H-elongata_contig1424.2932.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1424.2932.1
Unique NamemRNA_H-elongata_contig1424.2932.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1424.2932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1424contigH-elongata_contig1424:14232..16160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1424.2932.1prot_H-elongata_contig1424.2932.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1424 14232..16138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.4392657-CDS-H-elongata_contig1424:14231..144361622929845.4392657-CDS-H-elongata_contig1424:14231..14436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1424 14232..14436 -
1691679180.9314265-CDS-H-elongata_contig1424:14231..144361691679180.9314265-CDS-H-elongata_contig1424:14231..14436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1424 14232..14436 -
1622929845.4581645-CDS-H-elongata_contig1424:16106..161381622929845.4581645-CDS-H-elongata_contig1424:16106..16138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1424 16107..16138 -
1691679180.9407735-CDS-H-elongata_contig1424:16106..161381691679180.9407735-CDS-H-elongata_contig1424:16106..16138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1424 16107..16138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.4738219-UTR-H-elongata_contig1424:16138..161601622929845.4738219-UTR-H-elongata_contig1424:16138..16160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1424 16139..16160 -
1691679180.9490335-UTR-H-elongata_contig1424:16138..161601691679180.9490335-UTR-H-elongata_contig1424:16138..16160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1424 16139..16160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1424.2932.1

>prot_H-elongata_contig1424.2932.1 ID=prot_H-elongata_contig1424.2932.1|Name=mRNA_H-elongata_contig1424.2932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MLQDPGGRLFWWNFKSGDWEYHTPIAPSSYYPFTPPWALYGHPLSTPGYP
TYTATPGLYPTAQQQCLVSPSPSSVAMPW
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mRNA from alignment at H-elongata_contig1424:14232..16160-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1424.2932.1 ID=mRNA_H-elongata_contig1424.2932.1|Name=mRNA_H-elongata_contig1424.2932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1929bp|location=Sequence derived from alignment at H-elongata_contig1424:14232..16160- (Himanthalia elongata Himel1 dioecious)
TGACACCACGGCCTCGTGGGTGATGCTACAGGATCCTGGAGGTCGACTGT
TCTGGTGAGTGCGCTACCATTATCGTTTTCTCTCGAAATAGACTGCAAAA
AAGAAGGTCGTCTCTGAACGCTATCATCGCTGATCTTCAAGTAGCAACTA
CAACAGTAGATACGGGGCAGAGGATTAGCACTGTTCCCGAATGCATATAT
ATCTAACCTGGGACACGCCTATTATTATACCACTGGGGGAAGAAGGATTG
ATATCCCTTCAAGTGGGTGCAGATCTTCCAATCGCAGGAGGATGTCGTAC
AAATTGAAAGCCTGGTGGGCTGGGAAATATACTGGTTCTTTGTTTTTTTC
CCTAAAAATATTCAAACTCAAGGAAAATTTCCCAACTTCCACAGACTAGA
CGTGCCTATTTACACCCCACATTATGGGTGTTGACGTCGAACCACCACCC
AAGCATGTATATGCGATGAAATCCCAGGAAAACTACGACCCAGCGAGCTC
TGAAGTTTTTGGTGGACCCAACCCGACCATAACCCTAATCCAAACCCACA
CTCAAATCAAAGTTTACTGCTACTACAGCTGCTGGGCTAAGACTATCACG
AAAATTGACTACATAATAATATAGGTTTCAGAGAGACCGCCGTTGTTTTA
GCTAGCATTAAATCGCCATATTTTATATTTTGCTGATTATAAAAAATTGT
AAGAAATTTTGGCAAAAAAGAACCTGTCTCGTGCTTGCTTGGTGGTTCAA
CGTAAACACCCATGGGGTGTAAATAGGCGCACCCGAACTTCCACACCTAC
CCACCTTACTCTGAAGAAATAGAGAAGAAGTAAGGCCTGGGAAAGGAACG
TTTAACTTTTCACTGGCTCACTGACCATATATTGATATATTGTCATTTTC
TAGCATTTTTGTGATGTTCCTAGCTAATTATTATTATTACAATATAAGGG
CTATTTGATTGGTACAGTTGGAAAAATAGAAAATGAAGGAATGGAATAAT
AAAATAATAATGCATCAAAACAACGAATTCTCCAAAAAATAAGACAAAAT
ATTACAAAGGGTTAGTCATAGACTAGGGAACCAATGTGACAATATACGCC
TTGCGGAGCGCAGAAGTGCGTAACACCATGGGTTTCGATAAAAAATGGCG
CGTGGTAGATAGGGCATATTTTTCAGCGCTGGTAACAACCTAGCATATTA
AATTGCTCAGTCGGCAAAACGTAATTTCAAATACGCTATCATATCTAATA
ACTTCTTAGCTCCATCTCCCATCAAGGGACATCGGGCGTACCAGGTTTGA
TAAAATCGAACCAGCTTCGGGACAAATAGTAGTTTGTCGTTGGTATAGAT
TTCGATCCCAGAGCGAGATGTCAATATCTGCACCCAACTACAGAGTAGTT
ACCGACTAGCCCTCGTTATAATTTCAGTGGATATTCAACCAAGGCACGGC
TGGCGAAGATGACGACGTCGTACACTAATAATAAAGCTCTATTATCGTGA
CTACTTGTCATGATACATTTTATAGGAATTTTTATACTGCTCAGAGTTGA
CATAATATATCAATGAGTCGATCAAAGCCTACGCACTAGCGAAGAATAAA
ATCGATTATTATGCGTCCTGCTGGAATATATCCTCACTTTTGCTTGATCG
CATGATGAACGTTGATGATGCAGTTTGAGCTTGACTAACCATACATTCGT
CCGCCGACACGTACCCGACGACAGGTGGAACTTTAAGTCAGGTGACTGGG
AATACCATACCCCGATTGCTCCGAGCTCCTACTACCCTTTCACGCCCCCG
TGGGCTCTATATGGCCATCCGCTTTCCACCCCTGGTTACCCCACCTACAC
AGCCACCCCGGGCCTGTATCCCACTGCCCAACAGCAGTGCCTCGTCTCTC
CCTCGCCGTCGTCTGTAGCCATGCCTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig1424:14232..16160-

>mRNA_H-elongata_contig1424.2932.1 ID=mRNA_H-elongata_contig1424.2932.1|Name=mRNA_H-elongata_contig1424.2932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig1424:14232..16160- (Himanthalia elongata Himel1 dioecious)
ATGCTACAGGATCCTGGAGGTCGACTGTTCTGATGCTACAGGATCCTGGA
GGTCGACTGTTCTGGTGGAACTTTAAGTCAGGTGACTGGGAATACCATAC
CCCGATTGCTCCGAGCTCCTACTACCCTTTCACGCCCCCGTGGGCTCTAT
ATGGCCATCCGCTTTCCACCCCTGGTTACCCCACCTACACAGCCACCCCG
GGCCTGTATCCCACTGCCCAACAGCAGTGCCTCGTCTCTCCCTCGCCGTC
GTCTGTAGCCATGCCTTGGGTGGAACTTTAAGTCAGGTGACTGGGAATAC
CATACCCCGATTGCTCCGAGCTCCTACTACCCTTTCACGCCCCCGTGGGC
TCTATATGGCCATCCGCTTTCCACCCCTGGTTACCCCACCTACACAGCCA
CCCCGGGCCTGTATCCCACTGCCCAACAGCAGTGCCTCGTCTCTCCCTCG
CCGTCGTCTGTAGCCATGCCTTGG
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