prot_H-elongata_contig14234.2930.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14234.2930.1
Unique Nameprot_H-elongata_contig14234.2930.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length191
Homology
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.780e-39
Identity = 78/193 (40.41%), Postives = 109/193 (56.48%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH   L HWK   ++   +  T  + L F R   + +   ++V AD A  + DRRSVSG +V +    + W S TQKCV  +T E EY+ + +   EALF   +L  L+P      + ++  NEGA A+AD+  S    KHIDV+ HF+R     G     +V ++EQHADI
Sbjct:   19 MWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADI 211          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.800e-38
Identity = 81/193 (41.97%), Postives = 116/193 (60.10%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH     HWK   ++   +  T  + L+F     +  S  ++V AD A  +NDRRSVSG +V++    + W S TQKCV+ +T E EY+ + +   EALF+  +L  L+P     ++D++  NEGA A+A++  S S SKHIDV+ HF+R     G     +V +EEQHADI
Sbjct:  746 MWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 938          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.880e-38
Identity = 81/193 (41.97%), Postives = 116/193 (60.10%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH     HWK   ++   +  T  + L+F     +  S  ++V AD A  +NDRRSVSG +V++    + W S TQKCV+ +T E EY+ + +   EALF+  +L  L+P     ++D++  NEGA A+A++  S S SKHIDV+ HF+R     G     +V +EEQHADI
Sbjct: 1013 MWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 1205          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.160e-37
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA  RHSH     HWK   ++   +  T  + L+F     +  S  ++V AD A  +NDRRSVSG +V++    + W S TQKCV+ +  E EY  + +   +ALF+  +L  L+P     ++D++  NE A A+A++  S S SKHIDV+ HF+R     G     +V +EEQHADI
Sbjct:  115 MWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 307          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.260e-36
Identity = 75/194 (38.66%), Postives = 114/194 (58.76%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLK---LSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH      WK   ++   +  T  + L++ R   +      ++V AD A  + DRRSVSG +V++    + W S TQKCV+ +T E EY+ + +   E+LF+  +L  L+P +   ++D++  NEGA A+A++  S   SKHIDV+ HF+R     G     +V +E+QHADI
Sbjct:   25 MWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADI 218          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.020e-34
Identity = 71/191 (37.17%), Postives = 111/191 (58.12%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW+S  +RPD++ A RA ARH+H  S  HW    ++   +  T+++G+ + +G GL+L+++V+A  A  + D+ SVSG+    G       S TQ  VT ++ E EY+       EALF+RA L  + P+ +G  + ++  N+GA A+  +  S S +KHID++ HFIR   R G+  A  V T  QHAD+
Sbjct:   43 MWVSTFSRPDVSFAVRAVARHAHAPSKRHWDAIQKILGYLQGTRDLGITYQQGSGLRLAVYVNASYA-DTEDKHSVSGLATTGG------GSKTQSIVTLSSTEAEYIAAGEGVKEALFVRAALSFVAPETSGSNIQVLEDNQGAIAVVQNPLSSSRTKHIDLRFHFIRRLFRSGDISAKLVPTTGQHADL 226          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.750e-34
Identity = 78/193 (40.41%), Postives = 112/193 (58.03%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TR DI  A RA AR SHN     WK   ++   +  T  + L+F     +  S  ++V AD A  +NDRRSVSG +V++    + W S TQKCV+ +T E EY+ + +   EALF+  +L  L+P     ++D++  NEGA A+A++  S S SKHIDV+ HF+R     G     +V +EEQHADI
Sbjct:  281 MWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 473          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.490e-33
Identity = 76/193 (39.38%), Postives = 111/193 (57.51%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH     H K   ++   +     + L++ +   + +   ++V AD A  + DRRSVSG +V++ D  + W S TQKCVT +T E EYV + +   EALF++ +L  L+P     ++ +   NEGA A+A++  S   SKHIDV  HF+R     G     +V +E QHADI
Sbjct:  162 MWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLVYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVSHHFLRNLTEEGVLEIRHVSSEVQHADI 354          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.430e-33
Identity = 75/194 (38.66%), Postives = 114/194 (58.76%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLK---LSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH      WK   ++   +  T  + L++ R   +      ++V AD A  + DRRSVSG +V++    + W S TQKCV+ +T E EY+ + +   E+LF+  +L  L+P +   ++D++  NEGA A+A++  S   SKHIDV+ HF+R     G     +V +E+QHADI
Sbjct: 1078 MWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADI 1271          
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.010e-33
Identity = 76/193 (39.38%), Postives = 112/193 (58.03%), Query Frame = 0
Query:    1 MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 191
            MW++  TRPDI+NA RA ARHSH  +  HWK   ++   +  T  + L++ +   + +   ++V AD A  + DRRS SG +V++ D  + W S TQKCVT +T E EYV + +   EALF++ +L  L+P     ++ +   NEGA A+A++  S   SKHIDV+ H  R     G     +V +E QHADI
Sbjct:  447 MWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADI 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW47_9PHAE2.780e-3940.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK1_9PHAE1.800e-3841.97Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.880e-3841.97Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KBM6_9PHAE1.160e-3739.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J8M4_9PHAE3.260e-3638.66Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX2_9PHAE7.020e-3437.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B2_9PHAE8.750e-3440.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGA6_9PHAE1.490e-3339.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE2.430e-3338.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KN43_9PHAE4.010e-3339.38Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..172
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 6..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14234contigH-elongata_contig14234:6054..6626 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14234.2930.1mRNA_H-elongata_contig14234.2930.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14234 6054..6632 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14234.2930.1 ID=prot_H-elongata_contig14234.2930.1|Name=mRNA_H-elongata_contig14234.2930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRF
VRGPGLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTT
ATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIAD
SLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like