mRNA_H-elongata_contig14234.2930.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 144 bits (364), Expect = 7.470e-40 Identity = 79/194 (40.72%), Postives = 110/194 (56.70%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
LMW++ TRPDI+NA RA ARHSH L HWK ++ + T + L F R + + ++V AD A + DRRSVSG +V + + W S TQKCV +T E EY+ + + EALF +L L+P + ++ NEGA A+AD+ S KHIDV+ HF+R G +V ++EQHADI
Sbjct: 18 LMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADI 211
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.590e-39 Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
LMW++ TRPDI+NA RA ARHSH HWK ++ + T + L+F + S ++V AD A +NDRRSVSG +V++ + W S TQKCV+ +T E EY+ + + EALF+ +L L+P ++D++ NEGA A+A++ S S SKHIDV+ HF+R G +V +EEQHADI
Sbjct: 745 LMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 938
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.870e-39 Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
LMW++ TRPDI+NA RA ARHSH HWK ++ + T + L+F + S ++V AD A +NDRRSVSG +V++ + W S TQKCV+ +T E EY+ + + EALF+ +L L+P ++D++ NEGA A+A++ S S SKHIDV+ HF+R G +V +EEQHADI
Sbjct: 1012 LMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 1205
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 143 bits (360), Expect = 3.160e-38 Identity = 78/194 (40.21%), Postives = 113/194 (58.25%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLKLS--MFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
LMW++ TRPDI+NA RA RHSH HWK ++ + T + L+F + S ++V AD A +NDRRSVSG +V++ + W S TQKCV+ + E EY + + +ALF+ +L L+P ++D++ NE A A+A++ S S SKHIDV+ HF+R G +V +EEQHADI
Sbjct: 114 LMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADI 307
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 142 bits (358), Expect = 4.950e-37 Identity = 84/194 (43.30%), Postives = 110/194 (56.70%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGP--GLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
L+W++++TRPDIAN+ RA AR+S L HWK L + T G+ F G G L FV+AD A + DRRSVSG VVM AI W S TQKCVT +T + EYV + + E LF+R V + PK + + NEGA IA S S SKHIDV+ HF+R + E ++V ++ QHAD
Sbjct: 222 LLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADF 415
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE) HSP 1 Score: 137 bits (344), Expect = 8.790e-37 Identity = 76/195 (38.97%), Postives = 115/195 (58.97%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGPGLK---LSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
LMW++ TRPDI+NA RA ARHSH WK ++ + T + L++ R + ++V AD A + DRRSVSG +V++ + W S TQKCV+ +T E EY+ + + E+LF+ +L L+P + ++D++ NEGA A+A++ S SKHIDV+ HF+R G +V +E+QHADI
Sbjct: 24 LMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADI 218
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.060e-36 Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGP--GLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
L+W++++TRPDIANA RA AR+ L HW+ L + T G+ F RG G L F AD A + DRRSVSG VVM AI W S TQKCVT +T + EYV + + E LF+R V + PK + + NEGA IA S S SKHIDV+ HF+R + E ++V ++ QHAD
Sbjct: 170 LLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADF 363
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 7.400e-36 Identity = 84/194 (43.30%), Postives = 111/194 (57.22%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGP--GLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
L+W++++TRPDIAN+ RA AR+S L HWK L + T +G+ F RG G L FV AD A + DRRSVSG VVM AI W S TQ CVT +T ++EYV + + E LF+R V + PK + + NEGA IA S S SKHIDV+ HF+R + E ++V ++ QHAD
Sbjct: 541 LLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADF 734
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.480e-35 Identity = 84/193 (43.52%), Postives = 109/193 (56.48%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGP--GLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHAD 576
L+W++++TRPDIAN+ RA AR+S L HWK L T G+ F RG G L FV+AD A + DRRS SG VVM AI W S TQKCVT +T + EYV + + E LF+R V + PK + + NEGA IA S S SKHIDV+ HF+R + E ++V ++ QHAD
Sbjct: 403 LLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHAD 595
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 140 bits (353), Expect = 3.870e-35 Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 1
Query: 4 LMWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFVRGP--GLKLSMFVHADCAVASNDRRSVSGVVVMLGDAAIDWNSSTQKCVTTATCETEYVDLCNTPNEALFMRAVLVLLKPKLTGLRVDIIGGNEGAKAIADSLRSVSWSKHIDVKLHFIRGWIRPGESCALYVGTEEQHADI 579
L+W++++TRPDIANA RA AR+ L HW+ L + T G+ F RG G L F AD A + DRRSVSG VVM AI W S TQKCVT +T + EYV + + E LF+R V + PK + + NEGA IA S S SKHIDV+ HF+R + E ++V ++ QHAD
Sbjct: 474 LLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADF 667 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14234.2930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14234.2930.1 >prot_H-elongata_contig14234.2930.1 ID=prot_H-elongata_contig14234.2930.1|Name=mRNA_H-elongata_contig14234.2930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp MWLSIMTRPDIANAFRACARHSHNHSLWHWKTRLQVAADVNVTKEIGLRFback to top mRNA from alignment at H-elongata_contig14234:6054..6632- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14234.2930.1 ID=mRNA_H-elongata_contig14234.2930.1|Name=mRNA_H-elongata_contig14234.2930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig14234:6054..6632- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14234:6054..6632- >mRNA_H-elongata_contig14234.2930.1 ID=mRNA_H-elongata_contig14234.2930.1|Name=mRNA_H-elongata_contig14234.2930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig14234:6054..6632- (Himanthalia elongata Himel1 dioecious)back to top |