mRNA_H-elongata_contig142290.2926.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142290.2926.1
Unique NamemRNA_H-elongata_contig142290.2926.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: D7FIP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP8_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 9.060e-37
Identity = 62/78 (79.49%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPPPGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSIKLANPKV 234
            +FTEGQL  MDWNNVVAAGGSVLA+THPPPPGPLR+FYH  AYR+SDVDLF+YGLDEKAAT+KVR+I++++KLANPK+
Sbjct:  852 VFTEGQLTFMDWNNVVAAGGSVLAATHPPPPGPLRDFYHTLAYRSSDVDLFLYGLDEKAATEKVRKIFNAVKLANPKI 929
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A6H5JFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.230e-36
Identity = 62/78 (79.49%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPPPGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSIKLANPKV 234
            +FTEGQL  MDWNNVVAAGGSVLA+THPPPPGPLR+FYH  AYR+SDVDLF+YGL+EKAAT+KVR+IY+++KLANPK+
Sbjct:  643 VFTEGQLTFMDWNNVVAAGGSVLAATHPPPPGPLRDFYHTLAYRSSDVDLFIYGLNEKAATEKVREIYNAVKLANPKI 720
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A2P6NE02_9EUKA (Methionine aminopeptidase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NE02_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.560e-18
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPPPGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSI 213
            +FTEGQL  ++WNNV+ AGGSV+A   P PPG L+ +YH  AYR+SD+D+F+YGL  + A  K+ +IY  +
Sbjct: 1306 LFTEGQLTKLNWNNVLVAGGSVMACLAPAPPGNLKSYYHSYAYRSSDIDMFIYGLSVQEANAKLLEIYSQL 1376
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A166IN27_9AGAM (Ankyrin n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166IN27_9AGAM)

HSP 1 Score: 82.8 bits (203), Expect = 1.230e-16
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPPPGP-------LREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSIKLANP 228
            +FTEG L+ +DW+NVV AGG+V A   P P G         + F+ G+AY ASDVDLF+YGLD+  A +K++QI+D+I+ A P
Sbjct:  180 VFTEGALSQVDWSNVVVAGGAVQACLAPLPEGADDSRKALRKRFHEGEAYAASDVDLFLYGLDQTQAERKIQQIFDAIRDAVP 262
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A397SHB6_9GLOM (Ankyrin repeat-containing domain protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SHB6_9GLOM)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPP------PGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSIKLANP 228
            +FTE  L+ +DW+NV AAGG+VL+   P P      P  +RE+YH  AY++SD+DLF+YGL+++AA QK+ +IY+++  A P
Sbjct:  118 LFTESSLSGLDWSNVFAAGGAVLSCLLPIPKEYDVGPRKIREWYHNIAYKSSDIDLFIYGLNDEAAKQKMEEIYETVCNAVP 199
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A015KFQ6_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015KFQ6_RHIIW)

HSP 1 Score: 79.0 bits (193), Expect = 1.320e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPP------PGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSI 213
            +FTE  L+ +DW+NV AAGG+VL+   P P      P   R++YH  +YR SD+DLF+YGLDE+AA QK+ +IY+++
Sbjct:  142 LFTESSLSGLDWSNVFAAGGAVLSCLLPIPQKYGVSPRKTRDWYHDISYRDSDIDLFIYGLDEEAAKQKMIEIYEAV 218
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A2I1GSJ3_9GLOM (Ankyrin n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1GSJ3_9GLOM)

HSP 1 Score: 79.0 bits (193), Expect = 2.710e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPP------PGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSI 213
            +FTE  L+ +DW+NV AAGG+VL+   P P      P   R++YH  +YR SD+DLF+YGLDE+AA QK+ +IY+++
Sbjct:  145 LFTESSLSGLDWSNVFAAGGAVLSCLLPIPQKYGVSPRKTRDWYHDISYRDSDIDLFIYGLDEEAAKQKMIEIYEAV 221
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BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A2P4QZN0_RHIID (Ankyrin repeat-containing domain protein n=10 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2P4QZN0_RHIID)

HSP 1 Score: 79.0 bits (193), Expect = 2.770e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 IFTEGQLALMDWNNVVAAGGSVLASTHPPP------PGPLREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSI 213
            +FTE  L+ +DW+NV AAGG+VL+   P P      P   R++YH  +YR SD+DLF+YGLDE+AA QK+ +IY+++
Sbjct:  142 LFTESSLSGLDWSNVFAAGGAVLSCLLPIPQKYGVSPRKTRDWYHDISYRDSDIDLFIYGLDEEAAKQKMIEIYEAV 218
[Close]
BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: G4T640_SERID (Uncharacterized protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4T640_SERID)

HSP 1 Score: 78.6 bits (192), Expect = 3.790e-15
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 IFTEGQLA-LMDWNNVVAAGGSVLASTHPPPPGP------LREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSIKLANP 228
            +FTEG L+ L DW+NVVA+GGSVLAS  P P         +R+++HG+AY +SD+DLF+YGL  + A +K  QIY++++ + P
Sbjct:  116 VFTEGALSQLTDWSNVVASGGSVLASLLPLPAYARGSKRGIRKYFHGEAYSSSDIDLFLYGLTPEQAEKKAIQIYEAVRDSVP 198
[Close]
BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Match: A0A409WWI7_PSICY (Uncharacterized protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409WWI7_PSICY)

HSP 1 Score: 78.6 bits (192), Expect = 3.790e-15
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    1 IFTEGQLA-LMDWNNVVAAGGSVLASTHPPPPGP------LREFYHGQAYRASDVDLFMYGLDEKAATQKVRQIYDSIKLANP 228
            +FTEG L+ L++WNNVVAAGGSVLA   P P         +R +YH QAY  SDVDLF++GL  + A  K+++IY++++ + P
Sbjct:  116 VFTEGSLSQLVNWNNVVAAGGSVLACLTPIPDADKASKRTIRTYYHSQAYPTSDVDLFLWGLTPEQAEVKIKEIYEAVRDSVP 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142290.2926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP8_ECTSI9.060e-3779.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFP9_9PHAE1.230e-3679.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6NE02_9EUKA1.560e-1852.11Methionine aminopeptidase n=1 Tax=Planoprotosteliu... [more]
A0A166IN27_9AGAM1.230e-1649.40Ankyrin n=1 Tax=Peniophora sp. CONT TaxID=1314672 ... [more]
A0A397SHB6_9GLOM3.130e-1647.56Ankyrin repeat-containing domain protein n=1 Tax=G... [more]
A0A015KFQ6_RHIIW1.320e-1549.35Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A2I1GSJ3_9GLOM2.710e-1549.35Ankyrin n=2 Tax=Rhizophagus irregularis TaxID=5885... [more]
A0A2P4QZN0_RHIID2.770e-1549.35Ankyrin repeat-containing domain protein n=10 Tax=... [more]
G4T640_SERID3.790e-1548.19Uncharacterized protein n=1 Tax=Serendipita indica... [more]
A0A409WWI7_PSICY3.790e-1548.19Uncharacterized protein n=1 Tax=Psilocybe cyanesce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142290contigH-elongata_contig142290:487..1475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog2880.D7FIP8
KEGG koko:K04460
KEGG Pathwayko04010,map04010
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0007588,GO:0008150,GO:0008152,GO:0008465,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0019752,GO:0022607,GO:0030267,GO:0031406,GO:0032501,GO:0032787,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046487,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070402,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142290.2926.1prot_H-elongata_contig142290.2926.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142290 487..1448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.000156-CDS-H-elongata_contig142290:486..6041622929845.000156-CDS-H-elongata_contig142290:486..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142290 487..604 -
1691679180.7476947-CDS-H-elongata_contig142290:486..6041691679180.7476947-CDS-H-elongata_contig142290:486..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142290 487..604 -
1622929845.0200405-CDS-H-elongata_contig142290:1344..14481622929845.0200405-CDS-H-elongata_contig142290:1344..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142290 1345..1448 -
1691679180.7583084-CDS-H-elongata_contig142290:1344..14481691679180.7583084-CDS-H-elongata_contig142290:1344..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142290 1345..1448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.0378847-UTR-H-elongata_contig142290:1448..14751622929845.0378847-UTR-H-elongata_contig142290:1448..1475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142290 1449..1475 -
1691679180.7658134-UTR-H-elongata_contig142290:1448..14751691679180.7658134-UTR-H-elongata_contig142290:1448..1475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142290 1449..1475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142290.2926.1

>prot_H-elongata_contig142290.2926.1 ID=prot_H-elongata_contig142290.2926.1|Name=mRNA_H-elongata_contig142290.2926.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MDWNNVVAAGGSVLASTHPPPPGPLREFYHGQAYRASDVDLFMYGLDEKA
ATQKVRQIYDSIKLANPKVRRIA*
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mRNA from alignment at H-elongata_contig142290:487..1475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142290.2926.1 ID=mRNA_H-elongata_contig142290.2926.1|Name=mRNA_H-elongata_contig142290.2926.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=989bp|location=Sequence derived from alignment at H-elongata_contig142290:487..1475- (Himanthalia elongata Himel1 dioecious)
ATTTTCACGGAGGGTCAGCTGGCGTTAATGGACTGGAACAACGTGGTTGC
TGCGGGCGGAAGCGTGCTTGCCTCGACGCACCCTCCCCCGCCGGGACCGC
TGCGCGAGTTCTACCACGGGCAGGCCTACAGGTAAGTGTAAAAACAAAAT
GGGGGGGGGGAGTTGTAAATGAGGAAGCGTTTTATCTCTCTTTCCCTTGG
GCTCGATGAATAAAGAAAAGTGGTCGATGTACTGGATGTGTTGTTCAGGT
TGAACATGCACCAACTTAATAGGAAATTAAGGGTATCTATTTCGGTCTTG
TGTGCCCCTTTCCCTTTTCTACTTTTCCTGTGCATGTGTGTGTGTGTGTG
GGGGGGGGGGGGTTGCCTTCCTAGGCTCCAGCACTTGTGTGACCACGAGC
TCTATATTTTTCGGAAAAGAGCTAATGTGAGGAATTAGTTCAATAAAAAT
TCAAAGACTCCCATAATATGAATAGTTTGTCGCAGTAAATTACGGCGACA
TCGCGAGCGAGGTGACGTTTTGGCTCGAAAGAGAGAGGGAGGGAGAAAGC
AAGAGAAGCGGGGGGGCTGACCTGTTTGGGAATCACAACCCGCCCCGAAC
CGTTTTTCGTTTCTTTTGGTGAAAAACAGCGATTGTTAACGTTCCTTCAA
TATCGTCTAACGGGGATCAGTACTGCAGCAGGGGTGCGGTCGGTCTTGTA
TTTGCTTTTTATTTAATTTCTTCCGCGCCCCTTCCCATCCCCTCATTCCT
TTCCCTTCCCCTAAAATACATGTCTTATCCTGGAACTCCGCCCCTGCCCA
CTCCTACGACCGACCGCACGAACTATTCCCATTGCCTTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCGCCAGAGCAAGCGACGTGGACCTCTTCATGTACG
GGTTAGATGAAAAAGCGGCAACTCAGAAGGTTAGGCAGATCTACGATTCC
ATCAAGCTTGCCAACCCCAAGGTGAGAAGGATTGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig142290:487..1475-

>mRNA_H-elongata_contig142290.2926.1 ID=mRNA_H-elongata_contig142290.2926.1|Name=mRNA_H-elongata_contig142290.2926.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig142290:487..1475- (Himanthalia elongata Himel1 dioecious)
ATGGACTGGAACAACGTGGTTGCTGCGGGCGGAAGCGTGCTTGCCTCGAC
GCACCCTCCCCCGCCGGGACCGCTGCGCGAGTTCTACCACGGGCAGGCCT
ACAGATGGACTGGAACAACGTGGTTGCTGCGGGCGGAAGCGTGCTTGCCT
CGACGCACCCTCCCCCGCCGGGACCGCTGCGCGAGTTCTACCACGGGCAG
GCCTACAGAGCAAGCGACGTGGACCTCTTCATGTACGGGTTAGATGAAAA
AGCGGCAACTCAGAAGGTTAGGCAGATCTACGATTCCATCAAGCTTGCCA
ACCCCAAGGTGAGAAGGATTGCCTGAAGCAAGCGACGTGGACCTCTTCAT
GTACGGGTTAGATGAAAAAGCGGCAACTCAGAAGGTTAGGCAGATCTACG
ATTCCATCAAGCTTGCCAACCCCAAGGTGAGAAGGATTGCCTGA
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