mRNA_H-elongata_contig14225.2925.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14225.2925.1
Unique NamemRNA_H-elongata_contig14225.2925.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14225.2925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14225contigH-elongata_contig14225:6318..6874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size506
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14225.2925.1prot_H-elongata_contig14225.2925.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14225 6366..6698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.8008485-UTR-H-elongata_contig14225:6317..63651622929844.8008485-UTR-H-elongata_contig14225:6317..6365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14225 6318..6365 -
1691679180.6610365-UTR-H-elongata_contig14225:6317..63651691679180.6610365-UTR-H-elongata_contig14225:6317..6365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14225 6318..6365 -
1622929844.85035-UTR-H-elongata_contig14225:6698..68741622929844.85035-UTR-H-elongata_contig14225:6698..6874Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14225 6699..6874 -
1691679180.6879706-UTR-H-elongata_contig14225:6698..68741691679180.6879706-UTR-H-elongata_contig14225:6698..6874Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14225 6699..6874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.8156571-CDS-H-elongata_contig14225:6365..66171622929844.8156571-CDS-H-elongata_contig14225:6365..6617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14225 6366..6617 -
1691679180.6724498-CDS-H-elongata_contig14225:6365..66171691679180.6724498-CDS-H-elongata_contig14225:6365..6617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14225 6366..6617 -
1622929844.8288121-CDS-H-elongata_contig14225:6668..66981622929844.8288121-CDS-H-elongata_contig14225:6668..6698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14225 6669..6698 -
1691679180.6806874-CDS-H-elongata_contig14225:6668..66981691679180.6806874-CDS-H-elongata_contig14225:6668..6698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14225 6669..6698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14225.2925.1

>prot_H-elongata_contig14225.2925.1 ID=prot_H-elongata_contig14225.2925.1|Name=mRNA_H-elongata_contig14225.2925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MGHLGAGAGAVAGIEEGDTPAINPVSLRKGPGGIEKEVPAARVGNAASMV
TAAAMMTVPQATRIHQIGNDTEASTKLGEKGGGFVAAFETPTS*
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mRNA from alignment at H-elongata_contig14225:6318..6874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14225.2925.1 ID=mRNA_H-elongata_contig14225.2925.1|Name=mRNA_H-elongata_contig14225.2925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=557bp|location=Sequence derived from alignment at H-elongata_contig14225:6318..6874- (Himanthalia elongata Himel1 dioecious)
GGCGGAGGCATCTGCAGCGGCTGCGACGGTTTTGGAGGAGAAAGAGGAGG
GCAAGTCAAAAAGGACATCTTCGTGGCGACTTACGCGGCAGACGAGGGAG
CCTCGCGCTACCAGTTCAGACCGAAGGCGAGGAACCAATCGCACCGACAG
CAGCCGCACGATCAGTGGAAGCGACGATGGGGCATTTAGGGGCTGGTGCG
GGCGCGGTTGCAGCAACCACGGTACCGGAGCTGACCGCCACTGTCGCGAC
AGCGAAGGTTGCAGGAATTGAGGAGGGCGATACACCAGCGATCAACCCCG
TATCGTTGAGGAAGGGGCCGGGAGGGATCGAGAAGGAAGTACCTGCTGCG
AGAGTGGGGAATGCGGCGTCGATGGTAACGGCAGCAGCGATGATGACCGT
CCCACAAGCGACGAGAATCCATCAGATCGGAAACGACACGGAGGCCTCAA
CCAAGCTAGGGGAAAAGGGGGGCGGGTTCGTAGCGGCATTCGAAACGCCA
ACGTCTTGAGGCGTTGCGCCCAGAGGTGGGGCAGCGGGGGCAGGAGGGAG
ATAGACC
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Coding sequence (CDS) from alignment at H-elongata_contig14225:6318..6874-

>mRNA_H-elongata_contig14225.2925.1 ID=mRNA_H-elongata_contig14225.2925.1|Name=mRNA_H-elongata_contig14225.2925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig14225:6318..6874- (Himanthalia elongata Himel1 dioecious)
ATGGGGCATTTAGGGGCTGGTGCGGGCGCGATGGGGCATTTAGGGGCTGG
TGCGGGCGCGGTTGCAGGAATTGAGGAGGGCGATACACCAGCGATCAACC
CCGTATCGTTGAGGAAGGGGCCGGGAGGGATCGAGAAGGAAGTACCTGCT
GCGAGAGTGGGGAATGCGGCGTCGATGGTAACGGCAGCAGCGATGATGAC
CGTCCCACAAGCGACGAGAATCCATCAGATCGGAAACGACACGGAGGCCT
CAACCAAGCTAGGGGAAAAGGGGGGCGGGTTCGTAGCGGCATTCGAAACG
CCAACGTCTTGAGTTGCAGGAATTGAGGAGGGCGATACACCAGCGATCAA
CCCCGTATCGTTGAGGAAGGGGCCGGGAGGGATCGAGAAGGAAGTACCTG
CTGCGAGAGTGGGGAATGCGGCGTCGATGGTAACGGCAGCAGCGATGATG
ACCGTCCCACAAGCGACGAGAATCCATCAGATCGGAAACGACACGGAGGC
CTCAACCAAGCTAGGGGAAAAGGGGGGCGGGTTCGTAGCGGCATTCGAAA
CGCCAACGTCTTGA
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