mRNA_H-elongata_contig142246.2923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142246.2923.1
Unique NamemRNA_H-elongata_contig142246.2923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.380e-32
Identity = 84/166 (50.60%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQA------------------SITALPA------FFPFPSAADTAA-------------APASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLLARMD 387
            F   Q SDVDFLFGLDMLKRHLCVIDLK   LGLGSAG  VPFLSEKDLP SARETQA                  S+   P             A DT               A       G  ++A + +L  MGFSRE+AEGAL+ST GDAEQAAGLLLA+MD
Sbjct:  274 FTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAESSGSSXSVETAPTGXXXXXXXXXXXAMDTETPATXXXXXXXXXPAXXXXXXAGGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMD 439          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.700e-21
Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQAS 177
            F   Q SDVDFLFGLDMLKRHLCVIDLK   LGLGSAG  VPFLSEKDLP SARETQAS
Sbjct:  274 FTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAS 332          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: W7T228_9STRA (DNA damage inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T228_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.380e-21
Identity = 61/131 (46.56%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFPFPSAADTAAAPASTGGG--GDVDDANIL-RLVGMGFSREEAEGALASTEGDAEQAAGLLLARM 384
            F   +  DVDFLFGLDMLKRH C IDL++  L LGSAG  VPFL+EKDLP  AR  Q               A+        G G  G+  +A +  +L+G+GFSRE+A   L  TEG+ E+AA LLLA  
Sbjct:  306 FTVLENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLAEKDLPARARGHQEE------------GAEKGGEGGREGEGSVGEGREAGLEGQLIGLGFSREQARSGLRRTEGNVEEAAALLLAEF 424          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: C1DZD3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZD3_MICCC)

HSP 1 Score: 87.0 bits (214), Expect = 1.560e-17
Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   10 KQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFPFPSAADTAAAPASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
            ++  D+DFL GLDMLKRH C IDL+K  L +GSAG  +PFL E DLP  AR  Q      P             APA+ GG    +DA I +L+ +GF +E+ E AL++  G+ E AA +L 
Sbjct:  282 EKEQDMDFLLGLDMLKRHQCCIDLEKNELRVGSAGVSLPFLGEADLPAHARP-QNFEEQPPTXXXXXXXXXXXXAPAAAGG----NDAKIAKLMELGFPKEQCEQALSAAGGNEEHAAAILF 398          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A5D3DHR9_CUCME (DNA damage-inducible protein 1 isoform X2 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DHR9_CUCME)

HSP 1 Score: 83.2 bits (204), Expect = 2.090e-17
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQ-----ASITALP-AFFPFPSAADTAAAPASTGGGGDVD----DANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
            F      ++DFLFGLDML++H C+IDLK+  L +G     VPFL EKD+PPS  + +     AS +  P A  P  ++ +  AA A+   GG       +A + +LV +GF RE    AL   +G+ EQAAG L 
Sbjct:   43 FLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPTENSRNATAARATGNVGGAAQGPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLF 177          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A1S3BI81_CUCME (DNA damage-inducible protein 1 isoform X1 n=20 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BI81_CUCME)

HSP 1 Score: 83.6 bits (205), Expect = 2.880e-16
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQ-----ASITALP-AFFPFPSAADTAAAPASTG--GG---GDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
            F      ++DFLFGLDML++H C+IDLK+  L +G     VPFL EKD+PPS  + +     AS +  P A  P  ++ +  AA A+ G  GG   G   +A + +LV +GF RE    AL   +G+ EQAAG L 
Sbjct:  271 FLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPTENSRNATAARATAGNVGGAAQGPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLF 406          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A1E1X5B3_9ACAR (Putative dna damage inducible protein n=13 Tax=Ixodidae TaxID=6939 RepID=A0A1E1X5B3_9ACAR)

HSP 1 Score: 83.2 bits (204), Expect = 3.850e-16
Identity = 54/136 (39.71%), Postives = 71/136 (52.21%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSAR-----ETQASITALPAFFPFPSAADTAAAPASTGGGGDVDD----ANILRLVGMGFSREEAEGALASTEGDAEQAAGLLLAR 381
            F+  +   +D L GLDMLKRH C+IDLK+  L +G+ GT  PFL E +LP  AR      +Q+  T      P PS A          GGG  ++      + RL  MGF+RE+   AL    GDA+QA   LLA+
Sbjct:  271 FSVLEEQPMDMLLGLDMLKRHQCLIDLKRNVLVMGTTGTETPFLGEGELPECARLQMLGASQSGSTLGSELSPHPSRA----------GGGAAEEEFPAVAVDRLAAMGFTREQVVSALRQARGDADQALAALLAQ 396          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A329SNU4_9STRA (Uncharacterized protein n=44 Tax=Phytophthora TaxID=4783 RepID=A0A329SNU4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.100e-15
Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGL--GSAGTMVPFLSEKDLPPS-----ARETQASITALPAFFPFPSAADTAAA----PASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLLARM 384
            F    +  VDFLFGLDMLKRH C IDL K  L L  G +   V FL E ++P S     + +  A++  +P     P +  T+AA    PAS   G  +D   + +LVG+GF  + A  AL +  G+ E AAGLL   M
Sbjct:  286 FTILDQQGVDFLFGLDMLKRHQCCIDLSKNVLRLHEGDSFHEVSFLPEHEIPSSENRADSAQPPATLGGVPVPASTPGSTPTSAAAVPTPASAAAGSQIDREKVAQLVGLGFPEQRAIQALQTCNGNVEMAAGLLFESM 424          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A6U9QPW5_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9QPW5_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.890e-15
Identity = 55/129 (42.64%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFPFPSAADTAAAPA----STGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
            F   +  D++FLFGLDML+RH C IDLK   L  G++   VPFLSE  LP   R+   S    P   P   A    A PA     +G GG   +ANI +L+ +GFSR +A  AL +  GD ++AA LL 
Sbjct:  274 FTILENDDMEFLFGLDMLRRHECSIDLKHNVLRFGTSQIEVPFLSEGQLPEHLRK---SPLGPPPAGPSGEAPKPLAVPAPRMSESGRGGS--EANIEKLIQLGFSRSQATEALQACNGDVDKAASLLF 397          
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A833Q8W8_9POAL (DNA damage-inducible protein 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833Q8W8_9POAL)

HSP 1 Score: 80.1 bits (196), Expect = 3.500e-15
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFP-----------FPSAADTAAAPASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
            F      +++FLFGLDML++H C+IDLK+  L +G     VPFL EKD+P  ARE + +        P            PS A T+ AP++        +  I RL+ +GF RE  + AL   +G+ EQAA  L 
Sbjct:  206 FTVLDADNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVAVPFLQEKDIPTHAREERLANLQAAGSVPESSGARNQTPSLPSPARTSGAPSAAPVVSSDLETKIKRLMELGFDRESVKYALELFKGNEEQAAAFLF 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZE4_ECTSI1.380e-3250.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2G1_9PHAE3.700e-2183.05Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
W7T228_9STRA8.380e-2146.56DNA damage inducible protein n=2 Tax=Monodopsidace... [more]
C1DZD3_MICCC1.560e-1743.44Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A5D3DHR9_CUCME2.090e-1740.00DNA damage-inducible protein 1 isoform X2 n=1 Tax=... [more]
A0A1S3BI81_CUCME2.880e-1641.18DNA damage-inducible protein 1 isoform X1 n=20 Tax... [more]
A0A1E1X5B3_9ACAR3.850e-1639.71Putative dna damage inducible protein n=13 Tax=Ixo... [more]
A0A329SNU4_9STRA1.100e-1539.57Uncharacterized protein n=44 Tax=Phytophthora TaxI... [more]
A0A6U9QPW5_9CHLO1.890e-1542.64Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A833Q8W8_9POAL3.500e-1536.76DNA damage-inducible protein 1 n=1 Tax=Carex littl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142246contigH-elongata_contig142246:373..1114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.1e-27
Seed eggNOG ortholog2880.D7FZE4
KEGG koko:K09537,ko:K11885
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
Ec32 orthologEc-27_001500.1
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.7345457-CDS-H-elongata_contig142246:372..5831622929844.7345457-CDS-H-elongata_contig142246:372..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142246 373..583 +
1691679180.639341-CDS-H-elongata_contig142246:372..5831691679180.639341-CDS-H-elongata_contig142246:372..583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142246 373..583 +
1622929844.7512605-CDS-H-elongata_contig142246:929..11141622929844.7512605-CDS-H-elongata_contig142246:929..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142246 930..1114 +
1691679180.6514828-CDS-H-elongata_contig142246:929..11141691679180.6514828-CDS-H-elongata_contig142246:929..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142246 930..1114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142246.2923.1prot_H-elongata_contig142246.2923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142246 373..1114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142246.2923.1

>prot_H-elongata_contig142246.2923.1 ID=prot_H-elongata_contig142246.2923.1|Name=mRNA_H-elongata_contig142246.2923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLP
PSARETQASITALPAFFPFPSAADTAAAPASTGGGGDVDDANILRLVGMG
FSREEAEGALASTEGDAEQAAGLLLARMDDD*
back to top

mRNA from alignment at H-elongata_contig142246:373..1114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142246.2923.1 ID=mRNA_H-elongata_contig142246.2923.1|Name=mRNA_H-elongata_contig142246.2923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig142246:373..1114+ (Himanthalia elongata Himel1 dioecious)
TTCGCGCCCAAGCAGAGGAGCGACGTCGATTTTCTCTTCGGGCTTGACAT GCTCAAGCGACATCTTTGCGTCATCGACCTCAAGAAGGGGGGCCTCGGTC TGGGCAGTGCCGGCACAATGGTACCCTTCCTCTCCGAGAAAGATCTACCG CCTTCCGCCAGAGAGACTCAGGCAAGCATTACAGCCCTCCCTGCCTTCTT CCCTTTCCCATGTTCCTCGCTGGCAGGATTTCCGTTTAGGGTACCGTGCG GGGTTTCCTAGTGGCGGTTGACCCTGATTGGTTAACGTCTTGGCGTCTGG GTGCTGTTTCTTGTGCCAGATTGACTTGTCTCGGTGCACAGCTAGCGGTG TGTGGAGCAAGGCCTCTCTGTTAAAATATGAATGCGTATTGGCGCAAGAC CTTTTCTCACCACCCGTGCTGCTGGCCTCTTCCTCTCGTGGATTCTGATA TCTACTGCCCCCTCCGCAGGCGGAAGATCTCAACCGGAAACCTTCTGCAG GCGGGACGGAGGCGGGGAGTGGGGACGCGCCAGCGATACAGGAAGCGACA AAGGAAGCGGCAGCAGATACAGCAGCAGCGCCGGCGTCAACAGGGGGCGG CGGGGACGTTGATGATGCCAACATTTTGCGGCTGGTGGGGATGGGTTTCT CCAGAGAGGAGGCGGAGGGGGCGCTCGCGAGCACCGAGGGCGACGCGGAA CAGGCGGCCGGGCTGCTCCTAGCCCGGATGGACGACGACTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142246:373..1114+

>mRNA_H-elongata_contig142246.2923.1 ID=mRNA_H-elongata_contig142246.2923.1|Name=mRNA_H-elongata_contig142246.2923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig142246:373..1114+ (Himanthalia elongata Himel1 dioecious)
TTCGCGCCCAAGCAGAGGAGCGACGTCGATTTTCTCTTCGGGCTTGACAT
GCTCAAGCGACATCTTTGCGTCATCGACCTCAAGAAGGGGGGCCTCGGTC
TGGGCAGTGCCGGCACAATGGTACCCTTCCTCTCCGAGAAAGATCTACCG
CCTTCCGCCAGAGAGACTCAGGCAAGCATTACAGCCCTCCCTGCCTTCTT
CCCTTTCCCATTTCGCGCCCAAGCAGAGGAGCGACGTCGATTTTCTCTTC
GGGCTTGACATGCTCAAGCGACATCTTTGCGTCATCGACCTCAAGAAGGG
GGGCCTCGGTCTGGGCAGTGCCGGCACAATGGTACCCTTCCTCTCCGAGA
AAGATCTACCGCCTTCCGCCAGAGAGACTCAGGCAAGCATTACAGCCCTC
CCTGCCTTCTTCCCTTTCCCATCGGCAGCAGATACAGCAGCAGCGCCGGC
GTCAACAGGGGGCGGCGGGGACGTTGATGATGCCAACATTTTGCGGCTGG
TGGGGATGGGTTTCTCCAGAGAGGAGGCGGAGGGGGCGCTCGCGAGCACC
GAGGGCGACGCGGAACAGGCGGCCGGGCTGCTCCTAGCCCGGATGGACGA
CGACTAACGGCAGCAGATACAGCAGCAGCGCCGGCGTCAACAGGGGGCGG
CGGGGACGTTGATGATGCCAACATTTTGCGGCTGGTGGGGATGGGTTTCT
CCAGAGAGGAGGCGGAGGGGGCGCTCGCGAGCACCGAGGGCGACGCGGAA
CAGGCGGCCGGGCTGCTCCTAGCCCGGATGGACGACGACTAA
back to top