mRNA_H-elongata_contig14220.2919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14220.2919.1
Unique NamemRNA_H-elongata_contig14220.2919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14220.2919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14220contigH-elongata_contig14220:98..3154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-26_002860.1
Hectar predicted targeting categoryother localisation
Exons3
Model size2627
Cds size1368
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14220.2919.1prot_H-elongata_contig14220.2919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14220 657..2024 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.4454799-UTR-H-elongata_contig14220:97..6561622929844.4454799-UTR-H-elongata_contig14220:97..656Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 98..656 -
1691679180.5276845-UTR-H-elongata_contig14220:97..6561691679180.5276845-UTR-H-elongata_contig14220:97..656Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 98..656 -
1622929844.4837897-UTR-H-elongata_contig14220:2024..23141622929844.4837897-UTR-H-elongata_contig14220:2024..2314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 2025..2314 -
1691679180.5488868-UTR-H-elongata_contig14220:2024..23141691679180.5488868-UTR-H-elongata_contig14220:2024..2314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 2025..2314 -
1622929844.5022848-UTR-H-elongata_contig14220:2567..29011622929844.5022848-UTR-H-elongata_contig14220:2567..2901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 2568..2901 -
1691679180.5587184-UTR-H-elongata_contig14220:2567..29011691679180.5587184-UTR-H-elongata_contig14220:2567..2901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 2568..2901 -
1622929844.5182-UTR-H-elongata_contig14220:3078..31541622929844.5182-UTR-H-elongata_contig14220:3078..3154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 3079..3154 -
1691679180.5684354-UTR-H-elongata_contig14220:3078..31541691679180.5684354-UTR-H-elongata_contig14220:3078..3154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14220 3079..3154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.4682226-CDS-H-elongata_contig14220:656..20241622929844.4682226-CDS-H-elongata_contig14220:656..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14220 657..2024 -
1691679180.5386357-CDS-H-elongata_contig14220:656..20241691679180.5386357-CDS-H-elongata_contig14220:656..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14220 657..2024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14220.2919.1

>prot_H-elongata_contig14220.2919.1 ID=prot_H-elongata_contig14220.2919.1|Name=mRNA_H-elongata_contig14220.2919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=456bp
MITDERRRSSTAFSREGDEAGGVNQASGGEIEEEKENDVEIWTSRSSSTL
ARRIRESRRRTPSMVTAFGSPSSHRPVQSSRDDAVSSRRPPTTTGIHIGH
SVNERTTHSLGESRGSAAEPTWSPWLNTRHGSSNRQQGRLRTLSNRGRTP
RSAAAAHGAPSTTAVTRGTIRGRDARRSTRLLRLTGAEREGDNGDWKLDD
PPQANHDRSGRGSRETRWRHVQAEEEEGEEEFEWKLEDAPSFAQGGRSPR
DHGFGKEEKECKRKREGTPASALGRNIVQGQEGATSYLKYDGGDSSETRS
AEVSRAERGASRALPPPPLSTASPLSRQGEGLKARLLRRREMDQRRLRDH
SLQRCEGDRNSPGPDGSSFDGAGRNESPRWTTYNVELDHSCTEADGEEAA
ADEGKGKRRDLSRGRRDRGGALGDDRDRGGASSATSTEATIEGFLNQFRF
NGPSL*
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mRNA from alignment at H-elongata_contig14220:98..3154-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14220.2919.1 ID=mRNA_H-elongata_contig14220.2919.1|Name=mRNA_H-elongata_contig14220.2919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3057bp|location=Sequence derived from alignment at H-elongata_contig14220:98..3154- (Himanthalia elongata Himel1 dioecious)
GAGAAGGGCGAAGGACAGCCCACGGCTACGAGGTCGATGATTTTGTGGCG
TCCGAAGGGTCTTGCGACGAGGTAAAGTTAACGTTAGAGAGCAACGAATC
ATGGACGATAGAAAAATAGGGGTAAGCCTCCACTATGCCATAATACGTTG
ATGTTGTTCTTCCTGCGCCCGTTGCTTTGGTTATTTTTTTTAAATCTCAG
CGGCATATTATATTCTCACACTAATGACGTTTTCTGTGTTATTTCAGGCG
GAGGATGAGGAAGAGTCGGAAAAATCGGAATGGGAACAGGGGCCAGAGGC
CACAATATCCGAGGCAGACACGCCGTCGAACGTTCGTGAACGCCCGCGGA
TCCGGACTCGCGCGCTCGCGCTTGCGGGCGGGAGACGAGAGAGTGCAGAA
GCATTATATTTTCGCGATCTCAGGCTTCGCGAAAGGACGCGTAGTCGTGA
GAGAGTATTGGCGATTGGGCGCGAGGCAGCGGTGGCGGCTGAAAAATCGC
AAAGAGCAGGACGAGATAACCATGGTAGTCGCGGGACAAGAGATGCCATT
GGATCGACTGAGCTGCGGCAACTACAGCGAGAAGCAGGTTCGCTAAGGTC
AAACGAAATCCACGCGAACCGTTCGGGATCGATATAGTACGTGTTACAGG
TTCTATCCCATTGCTGTCCCTAGCTTTTGCCTTGCTGAGTTTTGGCTGTC
TCTCGCACAGCTTTGCTTTGCTCAGAAAGAGCGAAATTTACAATCTCCCG
TAGAGCTCTCACCCGTCTTTTCACATTACCCCCTCCCCCCCCCTCGAACC
GTGAACGTGTGCCCATCTTCACCGCTTTTTTTCGTCGTAGCTCGATTGCT
CGGTGACTCTCCGCTGAGGCCACGTCGCCGCCCCTCTCCGCCTTTGCGTC
TATCGGCGCGCCTCGAGCACCTGAGATCCGTCGCCCATGCGGACGCAGCA
AGCCACGACAGTGACGGTCTATTTAGCAGCGGCAGTGACAACGGGCAACC
CTTGTCTGACGAATCCTACAACGGTACCGATGACGATAAGGAAGCGAGGA
GAGAAAGGGAATCCCGCGGCCCAGCACGCCGACGAGGCCTCGCGGTCACG
TCCTTTGGCGTCTTGAGCTCCGCCCCTCGGATGATAACCGATGAAAGGCG
ACGGTCCTCGACTGCCTTTTCCAGGGAGGGTGACGAAGCTGGTGGTGTGA
ATCAGGCGTCGGGCGGGGAGATAGAGGAGGAGAAAGAGAATGACGTCGAG
ATATGGACCTCACGTTCAAGTAGTACTCTAGCTAGACGAATACGGGAAAG
TAGGAGAAGAACGCCGTCGATGGTGACAGCTTTCGGGTCACCTTCATCCC
ACCGTCCCGTCCAATCATCGAGGGATGATGCCGTTAGCAGCAGAAGACCC
CCTACGACCACAGGGATTCACATAGGCCACTCTGTAAACGAACGGACGAC
TCACTCCCTTGGAGAATCAAGGGGTTCTGCGGCGGAGCCGACGTGGTCGC
CGTGGTTGAACACTCGCCATGGTAGCTCCAACCGCCAGCAAGGTAGACTC
CGGACTCTATCTAACCGAGGTAGAACCCCTCGCAGCGCTGCCGCCGCCCA
TGGCGCTCCATCCACGACCGCCGTGACCAGAGGCACTATTCGTGGTCGTG
ATGCTAGACGAAGCACGCGCTTGTTGCGCCTCACCGGCGCGGAAAGAGAG
GGAGATAATGGAGATTGGAAATTAGATGATCCGCCACAAGCGAATCACGA
TCGTAGTGGAAGAGGCTCGCGCGAGACGAGATGGCGCCATGTCCAAGCGG
AAGAGGAGGAAGGAGAGGAAGAGTTTGAGTGGAAACTTGAAGATGCGCCG
TCATTTGCTCAAGGAGGTAGAAGCCCGAGGGACCATGGGTTTGGTAAGGA
GGAGAAAGAGTGTAAGCGTAAACGAGAAGGCACCCCTGCCTCGGCCCTAG
GTCGCAACATAGTTCAGGGCCAGGAGGGGGCAACGAGTTATCTGAAGTAT
GATGGCGGGGATTCCAGTGAGACGAGATCTGCCGAGGTTTCCAGGGCCGA
GCGTGGTGCATCTAGGGCCTTACCCCCTCCGCCCCTTAGCACTGCCTCGC
CGTTGAGTCGTCAGGGTGAAGGGCTCAAAGCGCGTCTGCTCCGGCGGCGT
GAGATGGACCAAAGAAGGCTCCGAGACCATTCTCTGCAACGTTGCGAGGG
TGATCGTAACTCTCCCGGGCCGGATGGCAGTAGCTTTGACGGCGCAGGAC
GCAATGAATCGCCGAGATGGACCACATATAACGTGGAACTTGACCACAGC
TGCACGGAAGCAGATGGGGAAGAAGCCGCAGCTGATGAAGGGAAGGGGAA
GCGGCGCGACCTTTCTCGCGGCAGGCGTGACCGTGGAGGGGCTTTGGGTG
ACGATCGCGACCGTGGCGGGGCCTCGTCAGCGACGTCAACAGAGGCGACC
ATCGAGGGCTTTCTCAATCAATTTCGGTTCAACGGGCCATCTCTCTAAAA
AATATGAAACTCTTCCGTCCTTCGCGAGGACAGCTAAGTATTTTAAGAGT
TCCACAGCTGTAGTAGAGCTATAATGTACCTCGTCGTGGACTGGAAGATA
ATTAGTGCGAAAGCAGCGCTCTGCCGTTCTGATGCTGCTCGGCACCCGTT
TGCAGAGAGTTCAGCAAGCTTGAGTGGTGATAGGAGCATACAGATTTCTT
ACGTATTACCGATCGATTCTCGTTTTCCCTTTGCTTGGAGAGTGTACTAT
TTTGTGTGTTACCGCCATGTTGCATTATTTGGGGGTGTACCCACCAATGT
CTGCCGTGCACTGGTCGTGCTTGGAGCTAAGGTTTGCATTGTTTTGCTTT
ATTTTTCCTTGCTTTTTATGCTTTCAGCCTTTTGTCCTTCCGGCTGGTGA
GGCAACTCGGTCAAGCATAGAGCTATGAAATGTCTAAAAGCAACCCATAA
GCAAAAGTCTCTTTGGCCACGGCGTGTACACACGTCTAATCTCGAGTGGT
AGACTGGTACACTTACCTCTAAGCCATTGATACGGGATAGATAGGTTAAC
TTCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig14220:98..3154-

>mRNA_H-elongata_contig14220.2919.1 ID=mRNA_H-elongata_contig14220.2919.1|Name=mRNA_H-elongata_contig14220.2919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2736bp|location=Sequence derived from alignment at H-elongata_contig14220:98..3154- (Himanthalia elongata Himel1 dioecious)
ATGATAACCGATGAAAGGCGACGGTCCTCGACTGCCTTTTCCAGGGAGGG
TGACGAAGCTGGTGGTGTGAATCAGGCGTCGGGCGGGGAGATAGAGGAGG
AGAAAGAGAATGACGTCGAGATATGGACCTCACGTTCAAGTAGTACTCTA
GCTAGACGAATACGGGAAAGTAGGAGAAGAACGCCGTCGATGGTGACAGC
TTTCGGGTCACCTTCATCCCACCGTCCCGTCCAATCATCGAGGGATGATG
CCGTTAGCAGCAGAAGACCCCCTACGACCACAGGGATTCACATAGGCCAC
TCTGTAAACGAACGGACGACTCACTCCCTTGGAGAATCAAGGGGTTCTGC
GGCGGAGCCGACGTGGTCGCCGTGGTTGAACACTCGCCATGGTAGCTCCA
ACCGCCAGCAAGGTAGACTCCGGACTCTATCTAACCGAGGTAGAACCCCT
CGCAGCGCTGCCGCCGCCCATGGCGCTCCATCCACGACCGCCGTGACCAG
AGGCACTATTCGTGGTCGTGATGCTAGACGAAGCACGCGCTTGTTGCGCC
TCACCGGCGCGGAAAGAGAGGGAGATAATGGAGATTGGAAATTAGATGAT
CCGCCACAAGCGAATCACGATCGTAGTGGAAGAGGCTCGCGCGAGACGAG
ATGGCGCCATGTCCAAGCGGAAGAGGAGGAAGGAGAGGAAGAGTTTGAGT
GGAAACTTGAAGATGCGCCGTCATTTGCTCAAGGAGGTAGAAGCCCGAGG
GACCATGGGTTTGGTAAGGAGGAGAAAGAGTGTAAGCGTAAACGAGAAGG
CACCCCTGCCTCGGCCCTAGGTCGCAACATAGTTCAGGGCCAGGAGGGGG
CAACGAGTTATCTGAAGTATGATGGCGGGGATTCCAGTGAGACGAGATCT
GCCGAGGTTTCCAGGGCCGAGCGTGGTGCATCTAGGGCCTTACCCCCTCC
GCCCCTTAGCACTGCCTCGCCGTTGAGTCGTCAGGGTGAAGGGCTCAAAG
CGCGTCTGCTCCGGCGGCGTGAGATGGACCAAAGAAGGCTCCGAGACCAT
TCTCTGCAACGTTGCGAGGGTGATCGTAACTCTCCCGGGCCGGATGGCAG
TAGCTTTGACGGCGCAGGACGCAATGAATCGCCGAGATGGACCACATATA
ACGTGGAACTTGACCACAGCTGCACGGAAGCAGATGGGGAAGAAGCCGCA
GCTGATGAAGGGAAGGGGAAGCGGCGCGACCTTTCTCGCGGCAGGCGTGA
CCGTGGAGGGGCTTTGGGTGACGATCGCGACCGTGGCGGGGCCTCGTCAG
CGACGTCAACAGAGGCGACCATCGAGGGCTTTCTCAATCAATTTCGGTTC
AACGGGCCATCTCTCTAAATGATAACCGATGAAAGGCGACGGTCCTCGAC
TGCCTTTTCCAGGGAGGGTGACGAAGCTGGTGGTGTGAATCAGGCGTCGG
GCGGGGAGATAGAGGAGGAGAAAGAGAATGACGTCGAGATATGGACCTCA
CGTTCAAGTAGTACTCTAGCTAGACGAATACGGGAAAGTAGGAGAAGAAC
GCCGTCGATGGTGACAGCTTTCGGGTCACCTTCATCCCACCGTCCCGTCC
AATCATCGAGGGATGATGCCGTTAGCAGCAGAAGACCCCCTACGACCACA
GGGATTCACATAGGCCACTCTGTAAACGAACGGACGACTCACTCCCTTGG
AGAATCAAGGGGTTCTGCGGCGGAGCCGACGTGGTCGCCGTGGTTGAACA
CTCGCCATGGTAGCTCCAACCGCCAGCAAGGTAGACTCCGGACTCTATCT
AACCGAGGTAGAACCCCTCGCAGCGCTGCCGCCGCCCATGGCGCTCCATC
CACGACCGCCGTGACCAGAGGCACTATTCGTGGTCGTGATGCTAGACGAA
GCACGCGCTTGTTGCGCCTCACCGGCGCGGAAAGAGAGGGAGATAATGGA
GATTGGAAATTAGATGATCCGCCACAAGCGAATCACGATCGTAGTGGAAG
AGGCTCGCGCGAGACGAGATGGCGCCATGTCCAAGCGGAAGAGGAGGAAG
GAGAGGAAGAGTTTGAGTGGAAACTTGAAGATGCGCCGTCATTTGCTCAA
GGAGGTAGAAGCCCGAGGGACCATGGGTTTGGTAAGGAGGAGAAAGAGTG
TAAGCGTAAACGAGAAGGCACCCCTGCCTCGGCCCTAGGTCGCAACATAG
TTCAGGGCCAGGAGGGGGCAACGAGTTATCTGAAGTATGATGGCGGGGAT
TCCAGTGAGACGAGATCTGCCGAGGTTTCCAGGGCCGAGCGTGGTGCATC
TAGGGCCTTACCCCCTCCGCCCCTTAGCACTGCCTCGCCGTTGAGTCGTC
AGGGTGAAGGGCTCAAAGCGCGTCTGCTCCGGCGGCGTGAGATGGACCAA
AGAAGGCTCCGAGACCATTCTCTGCAACGTTGCGAGGGTGATCGTAACTC
TCCCGGGCCGGATGGCAGTAGCTTTGACGGCGCAGGACGCAATGAATCGC
CGAGATGGACCACATATAACGTGGAACTTGACCACAGCTGCACGGAAGCA
GATGGGGAAGAAGCCGCAGCTGATGAAGGGAAGGGGAAGCGGCGCGACCT
TTCTCGCGGCAGGCGTGACCGTGGAGGGGCTTTGGGTGACGATCGCGACC
GTGGCGGGGCCTCGTCAGCGACGTCAACAGAGGCGACCATCGAGGGCTTT
CTCAATCAATTTCGGTTCAACGGGCCATCTCTCTAA
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