mRNA_H-elongata_contig142132.2913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142132.2913.1
Unique NamemRNA_H-elongata_contig142132.2913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: D1J792_ECTSI (ATP synthase subunit a, chloroplastic n=40 Tax=Phaeophyceae TaxID=2870 RepID=D1J792_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 1.180e-157
Identity = 228/248 (91.94%), Postives = 242/248 (97.58%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 768
            M+ILQSTN ++LNSLI LSDIEVGKHLY E+NDITFHGQV++VSSLVILLTLLFSFLGTSNKNI+PNGWQNFMESVVEF+K+IA+NQLG+  YRPWLPFIGTLFLF+FGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGN+LADELTVSVL LLVPLI+PLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH
Sbjct:    1 MNILQSTNTINLNSLIFLSDIEVGKHLYWEVNDITFHGQVILVSSLVILLTLLFSFLGTSNKNIVPNGWQNFMESVVEFVKEIAENQLGK-EYRPWLPFIGTLFLFVFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 247
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0A8F0F721_9PHAE (ATP synthase CF0 A subunit subunit IV n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F721_9PHAE)

HSP 1 Score: 441 bits (1133), Expect = 2.370e-155
Identity = 226/248 (91.13%), Postives = 234/248 (94.35%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 768
            MDI Q+ NF  LNSLI L+DIEVGKHLY E NDITFHGQVLIVSSLVIL+ LLFS  GTSNK  IP GWQNFME+VVEF+KDIAQNQLG TNYRPWLPFIGTLFLFIFGCNWAGA+IPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLI+PLPVM+LGVFASSVQALIFSTLAGAYIAEAVEGH
Sbjct:    1 MDIFQNENFSGLNSLIFLADIEVGKHLYWEFNDITFHGQVLIVSSLVILMILLFSIFGTSNKEAIPTGWQNFMEAVVEFVKDIAQNQLGATNYRPWLPFIGTLFLFIFGCNWAGALIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIVPLPVMVLGVFASSVQALIFSTLAGAYIAEAVEGH 248
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0A141BSD6_9PHAE (ATP synthase subunit a, chloroplastic n=14 Tax=Fucales TaxID=3009 RepID=A0A141BSD6_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 5.100e-150
Identity = 214/248 (86.29%), Postives = 234/248 (94.35%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 768
            M+ LQS++ ++ +SL+ LSDIEVGKH YLE+N ITFHGQVL+VSS+VIL+  LFSFLGTSNKNIIPNGWQNFMESVVEFIKDIA NQLGE+ YRPWLPFIGT+FLF+FGCNWAGA+IPWKLIKL+EGEF APTNDINTTVALALLTSF YFYAG STKGFGYFKRYIEPTP+LLPINILEDFTKPLSLSFRLFGNVLADELTVSVLT+LVPL IPLPVMLLGVFASSVQALIFSTLAGAYIAE++EGH
Sbjct:    1 MNTLQSSSLINFDSLLFLSDIEVGKHFYLELNGITFHGQVLVVSSIVILIVFLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAVNQLGESAYRPWLPFIGTIFLFVFGCNWAGAVIPWKLIKLNEGEFAAPTNDINTTVALALLTSFTYFYAGFSTKGFGYFKRYIEPTPILLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTVLVPLFIPLPVMLLGVFASSVQALIFSTLAGAYIAESIEGH 248
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0A8E6D5Q8_9PHAE (ATP synthase subunit a, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5Q8_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 3.440e-148
Identity = 215/248 (86.69%), Postives = 231/248 (93.15%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 768
            MD +Q  NF +L S ++LSD+EVGKHLYLEI  ITFHGQVLIVSS+VIL+ +LF+FLGTS +  +P GWQNFMESVVEF+KDIAQNQLGE+ YRPWLPFIGTLFLFIFGCNWAGA+IPWKLIKLSEGEFGAPTNDINTTVAL+LLTSFMYFYAGLSTKG GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGN+LADELTVSVL LLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVE H
Sbjct:    1 MDTVQYINFTNLKSSLILSDVEVGKHLYLEIGTITFHGQVLIVSSIVILVIILFAFLGTSRRKTVPEGWQNFMESVVEFVKDIAQNQLGESAYRPWLPFIGTLFLFIFGCNWAGALIPWKLIKLSEGEFGAPTNDINTTVALSLLTSFMYFYAGLSTKGLGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEEH 248
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: D1GJH7_FUCVE (ATP synthase subunit a, chloroplastic n=5 Tax=Fucales TaxID=3009 RepID=D1GJH7_FUCVE)

HSP 1 Score: 417 bits (1071), Expect = 8.210e-146
Identity = 214/241 (88.80%), Postives = 224/241 (92.95%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYI 747
            M+  QSTNF++  SLI LSDIEVGK LYLE+N ITFHGQVLIVSS VILL  LFS LGT NKNIIPNGWQNFMESVVEFIKDIA NQLGE+ YRPWLPFIGT+FLF+FGCNWAGAIIPWKLIKL EGEF APTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTP+LLPINILEDFTKPLSLSFRLFGNVLADELTVSVLT+LVPL IPLPVMLLGVFASSVQALIFSTLAGAY+
Sbjct:    1 MNTFQSTNFINFKSLIFLSDIEVGKRLYLELNGITFHGQVLIVSSFVILLVFLFSLLGTLNKNIIPNGWQNFMESVVEFIKDIAVNQLGESAYRPWLPFIGTIFLFVFGCNWAGAIIPWKLIKLPEGEFAAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPILLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTVLVPLFIPLPVMLLGVFASSVQALIFSTLAGAYL 241
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0A7S6U9W7_9STRA (ATP synthase subunit a, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W7_9STRA)

HSP 1 Score: 388 bits (996), Expect = 1.630e-134
Identity = 196/246 (79.67%), Postives = 218/246 (88.62%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVE 762
            MD +Q+T  +DLNSL  LS +EVGKH Y E   ITFHGQVL+VS  VI L LLF+ LGT NK  +P GWQNFME+V+EF +DIAQNQLG+T Y+PW+PFI TLFLFIFGCNWAGA+IPWKLIKLSEGE  APTNDINTTVALALLTSFMYFYAG+S KG GYFKRY+EPTP+LLPINILEDFTKPLSLSFRLFGNVLADELTVSVLT+LVPLIIPLP+M+LG+FASSVQALIFSTLA AYIAEA+E
Sbjct:    1 MDFVQTTTSIDLNSLFFLSGVEVGKHFYWEFAGITFHGQVLLVSWFVIALLLLFTLLGTLNKQRVPTGWQNFMEAVIEFTQDIAQNQLGKTFYKPWVPFISTLFLFIFGCNWAGALIPWKLIKLSEGELAAPTNDINTTVALALLTSFMYFYAGISKKGLGYFKRYLEPTPILLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTMLVPLIIPLPIMVLGIFASSVQALIFSTLAAAYIAEALE 246
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0A2I4Q287_9PHAE (ATP synthase subunit a, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q287_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 1.240e-128
Identity = 197/248 (79.44%), Postives = 215/248 (86.69%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 768
            MDI+Q T    L+SLI L+DIEVGKH Y EI+ ITFHGQVLIVSSLV+ L  L SF GT++K +IP   QNFME VV F+KDIA NQ+G  +Y+PWLPF+G LFLFIFGCN AGA+IPWKLIKL EGEFGAPTNDINTTVALALLTSFMYFYAG+S KGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGN+LADELTVSVL LLVPLI PLPVM LGVFASSVQALIFSTLA AYI E++EG 
Sbjct:    1 MDIVQQTK---LSSLIFLTDIEVGKHFYWEISGITFHGQVLIVSSLVLALIFLLSFWGTADKQLIPKTGQNFMELVVLFVKDIAVNQIGAGSYKPWLPFVGNLFLFIFGCNLAGALIPWKLIKLPEGEFGAPTNDINTTVALALLTSFMYFYAGISKKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLVLLVPLIAPLPVMALGVFASSVQALIFSTLAAAYIGESLEGE 245
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: B7T1S1_VAULI (ATP synthase subunit a, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1S1_VAULI)

HSP 1 Score: 366 bits (940), Expect = 1.070e-125
Identity = 190/248 (76.61%), Postives = 212/248 (85.48%), Query Frame = 1 
Query:   25 MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 768
            MD LQS N ++ +S +LLS++EVGKH Y EI  IT HGQV IVS  VI L LLF+FLGTSN   IP+ +QNFMESVVEF K IA NQLG + YRPWL FIGTLFLFI GCNWAGA+IPWKLIKL EGE  APTNDINTTVALALLTS  YF+AGL  KG GYFKRY++PTP+LLPINILEDFTKPLSLSFRLFGN+LADELTV+VLT+LVPLIIPLP+M+LGVFASS+QALIFSTLA AYI+EAVE H
Sbjct:   18 MDFLQSMNSINPSSFLLLSEVEVGKHFYWEIRGITLHGQVFIVSWFVIFLILLFTFLGTSNIQKIPSNFQNFMESVVEFTKKIAVNQLGHSEYRPWLSFIGTLFLFILGCNWAGALIPWKLIKLPEGELSAPTNDINTTVALALLTSGTYFFAGLQKKGIGYFKRYLQPTPVLLPINILEDFTKPLSLSFRLFGNILADELTVTVLTMLVPLIIPLPIMVLGVFASSIQALIFSTLAAAYISEAVELH 265
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0A089X7P9_9STRA (ATP synthase subunit a, chloroplastic n=6 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A089X7P9_9STRA)

HSP 1 Score: 350 bits (898), Expect = 1.170e-119
Identity = 177/230 (76.96%), Postives = 198/230 (86.09%), Query Frame = 1 
Query:   73 LLSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVE 762
            LL++ EVGKH Y  I     HGQVL V  +VI + LLFSFLGT N   IPNGWQNFME+ +++I +IA++QLGE+ Y+ W+PFIGTLFLFIFGCNWAGAIIPWKLIKL EGEF APTNDINTTVALALLTSF YFYAGLS KG GYFKRYI+P PLLLPINILEDFTKPLSLSFRLFGNVLADELT+SVLT LVPL+IPLP+M+LG+FA SVQALIFSTLA AYI EA+E
Sbjct:   13 LLAEAEVGKHFYWNIAGFLVHGQVLAVMWVVISILLLFSFLGTQNTERIPNGWQNFMEATIDYIVEIARDQLGESFYKEWVPFIGTLFLFIFGCNWAGAIIPWKLIKLPEGEFAAPTNDINTTVALALLTSFAYFYAGLSKKGLGYFKRYIQPIPLLLPINILEDFTKPLSLSFRLFGNVLADELTISVLTSLVPLVIPLPIMMLGIFAGSVQALIFSTLAAAYITEALE 242
[Close]
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Match: A0T0N9_THAPS (ATP synthase subunit a, chloroplastic n=24 Tax=Bacillariophyta TaxID=2836 RepID=A0T0N9_THAPS)

HSP 1 Score: 350 bits (897), Expect = 1.670e-119
Identity = 176/229 (76.86%), Postives = 197/229 (86.03%), Query Frame = 1 
Query:   76 LSDIEVGKHLYLEINDITFHGQVLIVSSLVILLTLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFIGTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMYFYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVE 762
            L++ EVGKH Y  I     HGQVL+V   V+LL L+FSFLGT   + IP+ WQNFMES ++F+ DIA+NQLGE+ YR W+PFIGTLFLFIFGCNWAGA+IPWKLI+L EGEF APTNDINTTVALALLTSF YFYAGLS KG GYFKRY+ P PLLLPINILEDFTKPLSLSFRLFGNVLADELTV+VLT LVPL+IPLP+MLLG+FA SVQALIFSTLA AYIAEA+E
Sbjct:   14 LAEAEVGKHFYWNIAGFLVHGQVLVVIWFVVLLLLIFSFLGTREADRIPHSWQNFMESALDFVVDIARNQLGESFYREWIPFIGTLFLFIFGCNWAGAVIPWKLIQLPEGEFAAPTNDINTTVALALLTSFSYFYAGLSKKGLGYFKRYVNPIPLLLPINILEDFTKPLSLSFRLFGNVLADELTVTVLTSLVPLVIPLPIMLLGIFAGSVQALIFSTLAAAYIAEALE 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142132.2913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J792_ECTSI1.180e-15791.94ATP synthase subunit a, chloroplastic n=40 Tax=Pha... [more]
A0A8F0F721_9PHAE2.370e-15591.13ATP synthase CF0 A subunit subunit IV n=1 Tax=Prot... [more]
A0A141BSD6_9PHAE5.100e-15086.29ATP synthase subunit a, chloroplastic n=14 Tax=Fuc... [more]
A0A8E6D5Q8_9PHAE3.440e-14886.69ATP synthase subunit a, chloroplastic n=1 Tax=Ishi... [more]
D1GJH7_FUCVE8.210e-14688.80ATP synthase subunit a, chloroplastic n=5 Tax=Fuca... [more]
A0A7S6U9W7_9STRA1.630e-13479.67ATP synthase subunit a, chloroplastic n=1 Tax=Schi... [more]
A0A2I4Q287_9PHAE1.240e-12879.44ATP synthase subunit a, chloroplastic n=1 Tax=Dict... [more]
B7T1S1_VAULI1.070e-12576.61ATP synthase subunit a, chloroplastic n=1 Tax=Vauc... [more]
A0A089X7P9_9STRA1.170e-11976.96ATP synthase subunit a, chloroplastic n=6 Tax=Cosc... [more]
A0T0N9_THAPS1.670e-11976.86ATP synthase subunit a, chloroplastic n=24 Tax=Bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142132contigH-elongata_contig142132:310..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score448.4
Seed ortholog evalue2.2e-123
Seed eggNOG ortholog2880.D1J792
Preferred nameATP6
KEGG koko:K02108,ko:K02126,ko:K02967
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko03010,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map03010,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158,M00178,M00179
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008324,GO:0008340,GO:0008553,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0009628,GO:0009987,GO:0010259,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031226,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033177,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0036296,GO:0036442,GO:0040011,GO:0042407,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046716,GO:0046907,GO:0046933,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0055086,GO:0055093,GO:0060249,GO:0061024,GO:0065007,GO:0065008,GO:0070050,GO:0070482,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098807,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGsCOG0356@1,KOG4665@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00194,ko03011,ko03029,ko03110
Hectar predicted targeting categorysignal anchor
Exons1
Model size771
Cds size747
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.1304386-CDS-H-elongata_contig142132:309..10561622929844.1304386-CDS-H-elongata_contig142132:309..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142132 310..1056 -
1691679180.4135823-CDS-H-elongata_contig142132:309..10561691679180.4135823-CDS-H-elongata_contig142132:309..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142132 310..1056 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.1459022-UTR-H-elongata_contig142132:1056..10801622929844.1459022-UTR-H-elongata_contig142132:1056..1080Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142132 1057..1080 -
1691679180.4249976-UTR-H-elongata_contig142132:1056..10801691679180.4249976-UTR-H-elongata_contig142132:1056..1080Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142132 1057..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142132.2913.1prot_H-elongata_contig142132.2913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142132 310..1056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142132.2913.1

>prot_H-elongata_contig142132.2913.1 ID=prot_H-elongata_contig142132.2913.1|Name=mRNA_H-elongata_contig142132.2913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MDILQSTNFLDLNSLILLSDIEVGKHLYLEINDITFHGQVLIVSSLVILL
TLLFSFLGTSNKNIIPNGWQNFMESVVEFIKDIAQNQLGETNYRPWLPFI
GTLFLFIFGCNWAGAIIPWKLIKLSEGEFGAPTNDINTTVALALLTSFMY
FYAGLSTKGFGYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADE
LTVSVLTLLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH*
back to top

mRNA from alignment at H-elongata_contig142132:310..1080-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142132.2913.1 ID=mRNA_H-elongata_contig142132.2913.1|Name=mRNA_H-elongata_contig142132.2913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at H-elongata_contig142132:310..1080- (Himanthalia elongata Himel1 dioecious)
TTTATATCTTTACTAAAATTAAATATGGATATTCTTCAAAGTACTAATTT
TCTTGATTTAAATTCATTAATCCTTTTATCAGATATTGAAGTTGGAAAAC
ATCTCTATTTGGAAATTAATGATATCACTTTTCATGGTCAAGTATTAATC
GTTAGCTCTCTTGTAATACTGTTAACACTTTTATTTTCTTTTTTAGGGAC
ATCAAATAAAAATATAATTCCTAATGGCTGGCAAAATTTTATGGAGTCAG
TTGTTGAATTTATTAAAGATATCGCCCAAAATCAACTTGGGGAAACTAAC
TATAGACCATGGTTACCATTTATTGGTACATTATTTTTATTCATCTTTGG
GTGTAATTGGGCAGGTGCTATAATTCCATGGAAACTAATAAAGTTATCTG
AGGGTGAATTTGGTGCTCCAACAAATGATATAAATACAACCGTAGCTCTT
GCTTTATTAACTTCATTTATGTATTTTTATGCAGGGCTTAGTACAAAAGG
GTTTGGTTATTTTAAACGTTATATAGAGCCTACACCTCTTTTATTACCAA
TTAATATTTTAGAGGACTTTACTAAGCCTCTTTCATTAAGCTTTCGATTA
TTTGGTAATGTTTTAGCAGATGAATTAACGGTTTCTGTATTAACGTTGTT
AGTTCCTTTAATTATTCCTTTACCTGTAATGCTTTTAGGAGTATTTGCAA
GTTCTGTTCAAGCTTTAATTTTTTCAACATTAGCTGGTGCTTATATTGCT
GAAGCTGTTGAAGGTCATTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142132:310..1080-

>mRNA_H-elongata_contig142132.2913.1 ID=mRNA_H-elongata_contig142132.2913.1|Name=mRNA_H-elongata_contig142132.2913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig142132:310..1080- (Himanthalia elongata Himel1 dioecious)
ATGGATATTCTTCAAAGTACTAATTTTCTTGATTTAAATTCATTAATCCT
TTTATCAGATATTGAAGTTGGAAAACATCTCTATTTGGAAATTAATGATA
TCACTTTTCATGGTCAAGTATTAATCGTTAGCTCTCTTGTAATACTGTTA
ACACTTTTATTTTCTTTTTTAGGGACATCAAATAAAAATATAATTCCTAA
TGGCTGGCAAAATTTTATGGAGTCAGTTGTTGAATTTATTAAAGATATCG
CCCAAAATCAACTTGGGGAAACTAACTATAGACCATGGTTACCATTTATT
GGTACATTATTTTTATTCATCTTTGGGTGTAATTGGGCAGGTGCTATAAT
TCCATGGAAACTAATAAAGTTATCTGAGGGTGAATTTGGTGCTCCAACAA
ATGATATAAATACAACCGTAGCTCTTGCTTTATTAACTTCATTTATGTAT
TTTTATGCAGGGCTTAGTACAAAAGGGTTTGGTTATTTTAAACGTTATAT
AGAGCCTACACCTCTTTTATTACCAATTAATATTTTAGAGGACTTTACTA
AGCCTCTTTCATTAAGCTTTCGATTATTTGGTAATGTTTTAGCAGATGAA
TTAACGGTTTCTGTATTAACGTTGTTAGTTCCTTTAATTATTCCTTTACC
TGTAATGCTTTTAGGAGTATTTGCAAGTTCTGTTCAAGCTTTAATTTTTT
CAACATTAGCTGGTGCTTATATTGCTGAAGCTGTTGAAGGTCATTAAATG
GATATTCTTCAAAGTACTAATTTTCTTGATTTAAATTCATTAATCCTTTT
ATCAGATATTGAAGTTGGAAAACATCTCTATTTGGAAATTAATGATATCA
CTTTTCATGGTCAAGTATTAATCGTTAGCTCTCTTGTAATACTGTTAACA
CTTTTATTTTCTTTTTTAGGGACATCAAATAAAAATATAATTCCTAATGG
CTGGCAAAATTTTATGGAGTCAGTTGTTGAATTTATTAAAGATATCGCCC
AAAATCAACTTGGGGAAACTAACTATAGACCATGGTTACCATTTATTGGT
ACATTATTTTTATTCATCTTTGGGTGTAATTGGGCAGGTGCTATAATTCC
ATGGAAACTAATAAAGTTATCTGAGGGTGAATTTGGTGCTCCAACAAATG
ATATAAATACAACCGTAGCTCTTGCTTTATTAACTTCATTTATGTATTTT
TATGCAGGGCTTAGTACAAAAGGGTTTGGTTATTTTAAACGTTATATAGA
GCCTACACCTCTTTTATTACCAATTAATATTTTAGAGGACTTTACTAAGC
CTCTTTCATTAAGCTTTCGATTATTTGGTAATGTTTTAGCAGATGAATTA
ACGGTTTCTGTATTAACGTTGTTAGTTCCTTTAATTATTCCTTTACCTGT
AATGCTTTTAGGAGTATTTGCAAGTTCTGTTCAAGCTTTAATTTTTTCAA
CATTAGCTGGTGCTTATATTGCTGAAGCTGTTGAAGGTCATTAA
back to top