mRNA_H-elongata_contig142074.2910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142074.2910.1
Unique NamemRNA_H-elongata_contig142074.2910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A6H5L632_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L632_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.900e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            +EEWDPALLHL+  LL DFV+LCMSAALGGV+AA VGLPETLGYIVGGMVVG SG N+I
Sbjct:  529 KEEWDPALLHLDATLLRDFVVLCMSAALGGVLAAGVGLPETLGYIVGGMVVGPSGVNMI 587
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: D7FYX0_ECTSI (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 6.660e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            +EEWDPALLHL+  LL DFV+LCMSAALGGV+AA VGLPETLGYIVGGMVVG SG N+I
Sbjct:  185 KEEWDPALLHLDATLLRDFVVLCMSAALGGVLAAGVGLPETLGYIVGGMVVGPSGVNVI 243
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A7S2HHK2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHK2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.770e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            QE  DPA+LHL+ +LL D V+LC++ A+GG+ AA + LP TLGYI+GGM+VG S   L+
Sbjct:   32 QEAADPAVLHLDVQLLQDMVVLCLATAVGGLFAALLDLPHTLGYILGGMLVGPSCLGLV 90
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A1V9ZXS8_9STRA (Monovalent Cation:Proton Antiporter-2 (CPA2) family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXS8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.580e-11
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            ++E DPA+LH +  LLG   +L   +ALGG++ +W+ LP T+GY+VGG VVG SG  L+
Sbjct:  221 KQESDPAVLHYDFSLLGQIALLFGVSALGGILTSWINLPPTIGYLVGGAVVGPSGFGLV 279
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: T0R6H5_SAPDV (Na_H_Exchanger domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R6H5_SAPDV)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-10
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            + + DPA+LH +  LLG   +L   +ALGG++ +W+ LP T+GY+VGG VVG SG  L+
Sbjct:  203 ENDADPAVLHYDFSLLGQIALLFGVSALGGIVTSWINLPPTIGYLVGGAVVGPSGLGLV 261
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A1V9YA00_9STRA (Monovalent Cation:Proton Antiporter-2 (CPA2) family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA00_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.640e-10
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            +++ DPA+LH +  LLG   +L   +ALGG+  +W+ LP T+GY+VGG VVG SG  L+
Sbjct:  206 KQDADPAVLHYDFSLLGQIALLFGVSALGGIFTSWINLPPTIGYLVGGAVVGPSGFGLV 264
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A7S2WDJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDJ5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.600e-10
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 DPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            DPALLHL+  LL D V L ++AA+GG++AA + LP +LG+I+GGM+VG S  +LI
Sbjct:  163 DPALLHLDVALLRDMVCLSLAAAIGGLLAASIDLPHSLGFILGGMLVGPSCMSLI 217
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A8J2SYW5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYW5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.750e-10
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 DPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            DPA LHL+ + L D V L ++ A+GG++AA V  P TLGY+VGG+VVG SG +L+
Sbjct:  205 DPAKLHLDARFLQDVVALSLATAVGGLVAALVHAPHTLGYMVGGVVVGPSGLDLV 259
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BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A7S4DUV8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DUV8_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   13 DPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            DPALL+++  L+   +IL  +AA+GG +A   GLP TLGYIVGG++ G SG N++
Sbjct:  266 DPALLYVDVGLIHSILILIGAAAVGGTLAIRSGLPTTLGYIVGGLIAGPSGFNVL 320
[Close]
BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Match: A0A397ABI2_9STRA (Na_H_Exchanger domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ABI2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.040e-8
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   13 DPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMVVGRSGANLI 177
            DPA+LH +  LLG   +L   +A+GG+++  + LP T+GY+VGG VVG SG  L+
Sbjct:  190 DPAVLHYDFGLLGQIALLFGVSAVGGILSTSINLPPTVGYLVGGAVVGPSGLGLV 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142074.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L632_9PHAE4.900e-2381.36Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D7FYX0_ECTSI6.660e-2381.36Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A7S2HHK2_9STRA1.770e-1255.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1V9ZXS8_9STRA5.580e-1149.15Monovalent Cation:Proton Antiporter-2 (CPA2) famil... [more]
T0R6H5_SAPDV1.930e-1047.46Na_H_Exchanger domain-containing protein n=2 Tax=S... [more]
A0A1V9YA00_9STRA2.640e-1047.46Monovalent Cation:Proton Antiporter-2 (CPA2) famil... [more]
A0A7S2WDJ5_9STRA3.600e-1056.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SYW5_9STRA6.750e-1054.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DUV8_9EUKA2.110e-850.91Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A397ABI2_9STRA8.040e-847.27Na_H_Exchanger domain-containing protein n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142074contigH-elongata_contig142074:1110..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FYX0
Preferred nameTMCO3
GOsGO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0034220,GO:0051179,GO:0051234,GO:0055085,GO:0098655
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.9544609-CDS-H-elongata_contig142074:1109..12861622929843.9544609-CDS-H-elongata_contig142074:1109..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142074 1110..1286 +
1691679180.3258486-CDS-H-elongata_contig142074:1109..12861691679180.3258486-CDS-H-elongata_contig142074:1109..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142074 1110..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142074.2910.1prot_H-elongata_contig142074.2910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142074 1110..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142074.2910.1

>prot_H-elongata_contig142074.2910.1 ID=prot_H-elongata_contig142074.2910.1|Name=mRNA_H-elongata_contig142074.2910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QEEWDPALLHLNPKLLGDFVILCMSAALGGVMAAWVGLPETLGYIVGGMV
VGRSGANLI
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mRNA from alignment at H-elongata_contig142074:1110..1286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142074.2910.1 ID=mRNA_H-elongata_contig142074.2910.1|Name=mRNA_H-elongata_contig142074.2910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig142074:1110..1286+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGAGTGGGACCCGGCGTTGCTGCACTTGAACCCCAAGCTCCTCGG
AGACTTCGTTATCTTGTGCATGAGTGCCGCCCTCGGGGGCGTGATGGCGG
CGTGGGTGGGGCTCCCGGAGACGCTGGGTTACATCGTGGGGGGCATGGTC
GTGGGTCGCAGTGGGGCGAACTTGATT
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Coding sequence (CDS) from alignment at H-elongata_contig142074:1110..1286+

>mRNA_H-elongata_contig142074.2910.1 ID=mRNA_H-elongata_contig142074.2910.1|Name=mRNA_H-elongata_contig142074.2910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig142074:1110..1286+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGAGTGGGACCCGGCGTTGCTGCACTTGAACCCCAAGCTCCTCGG
AGACTTCGTTATCTTGTGCATGAGTGCCGCCCTCGGGGGCGTGATGGCGG
CGTGGGTGGGGCTCCCGGAGACGCTGGGTTACATCGTGGGGGGCATGGTC
GTGGGTCGCAGTGGGGCGAACTTGATTCAGGAAGAGTGGGACCCGGCGTT
GCTGCACTTGAACCCCAAGCTCCTCGGAGACTTCGTTATCTTGTGCATGA
GTGCCGCCCTCGGGGGCGTGATGGCGGCGTGGGTGGGGCTCCCGGAGACG
CTGGGTTACATCGTGGGGGGCATGGTCGTGGGTCGCAGTGGGGCGAACTT
GATT
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