prot_H-elongata_contig142000.2907.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig142000.2907.1
Unique Name	prot_H-elongata_contig142000.2907.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	61

Homology

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: D8LGB6_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB6_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 7.160e-31
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0

Query:    1 MLAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVLGI 61
            MLAE+CVPVATHRHGCCV+QRA+DAATVEQSRLLVSQV  HALQLMQ PYGNYVVQYVLGI
Sbjct:    1 MLAEACVPVATHRHGCCVIQRAIDAATVEQSRLLVSQVSKHALQLMQDPYGNYVVQYVLGI 61

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: F0WL38_9STRA (Uncharacterized protein AlNc14C140G7225 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WL38_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.530e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            ++  C  V THRHGCCVLQR LDAA V Q + L++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  684 VSRECTTVGTHRHGCCVLQRCLDAANVTQKKELIAQVEYHAMKLMQDPYGNYVVQYVL 741

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A1V9YPP5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.530e-17
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            +A  C  V THRHGCCVLQR +DAA   Q R ++SQV  HA++LMQ PYGNYVVQYVL
Sbjct:  405 VATDCTVVGTHRHGCCVLQRCVDAANEAQKRAVISQVELHAMKLMQDPYGNYVVQYVL 462

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A024GRC2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRC2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.230e-16
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            ++  C  V THRHGCCVLQR LDAA   Q + L++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  697 VSRECTTVGTHRHGCCVLQRCLDAANTLQKKELIAQVENHAMKLMQDPYGNYVVQYVL 754

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A8K1FE37_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE37_PYTOL)

HSP 1 Score: 77.8 bits (190), Expect = 1.620e-16
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            + + C  V THRHGCCVLQR LDAA   Q R +++QV   A++LMQ PYGNYVVQYVL
Sbjct:   81 VCKECTTVGTHRHGCCVLQRCLDAANDTQKREVITQVEKQAMKLMQDPYGNYVVQYVL 138

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: C6HGH6_AJECH (RNA-binding protein n=2 Tax=Histoplasma TaxID=5036 RepID=C6HGH6_AJECH)

HSP 1 Score: 79.3 bits (194), Expect = 7.970e-16
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVLGI 61
            + ESCVPV THRHGCCVLQR +D A+ +Q   L+ Q+  +A  L+Q P+GNYVVQY+L +
Sbjct:  560 VGESCVPVGTHRHGCCVLQRCIDHASGDQRARLIEQITNNAFTLVQDPFGNYVVQYILDL 619

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A3R7AAA0_9STRA (PUM-HD domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AAA0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.780e-16
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            ++  C  V THRHGCCVLQR +DAA   Q R +++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  187 VSAECTVVGTHRHGCCVLQRCVDAANPAQRREVIAQVEKHAMKLMQDPYGNYVVQYVL 244

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A6G0WN87_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN87_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.080e-15
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            +   C  V THRHGCCVLQR +DAA   Q + +++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  457 VCAECTVVGTHRHGCCVLQRCVDAANASQKKEVIAQVEKHAMKLMQDPYGNYVVQYVL 514

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A485KML4_9STRA (Aste57867_9189 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KML4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-15
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 59
            +   C  V THRHGCCVLQR +DAA V Q   +++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  489 VCAECTVVGTHRHGCCVLQRCVDAANVVQKAEVIAQVEAHAMKLMQDPYGNYVVQYVL 546

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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: I4Y6W8_WALMC (ARM repeat-containing protein (Fragment) n=3 Tax=Wallemia mellicola TaxID=1708541 RepID=I4Y6W8_WALMC)

HSP 1 Score: 78.6 bits (192), Expect = 1.480e-15
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query:    2 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVLGI 61
            +A +C+ VATHRHGCCVLQR +D A+ +Q   LV+++  HAL L+Q P+GNYVVQYVL +
Sbjct:  338 VASNCIEVATHRHGCCVLQRCIDHASDQQRIQLVTEITYHALTLIQDPFGNYVVQYVLDL 397

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot

BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LGB6_ECTSI	7.160e-31	90.16	PUM-HD domain-containing protein n=1 Tax=Ectocarpu...	[more]
F0WL38_9STRA	3.530e-17	65.52	Uncharacterized protein AlNc14C140G7225 n=1 Tax=Al...	[more]
A0A1V9YPP5_9STRA	6.530e-17	65.52	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]
A0A024GRC2_9STRA	1.230e-16	63.79	Uncharacterized protein n=1 Tax=Albugo candida Tax...	[more]
A0A8K1FE37_PYTOL	1.620e-16	62.07	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
C6HGH6_AJECH	7.970e-16	56.67	RNA-binding protein n=2 Tax=Histoplasma TaxID=5036...	[more]
A0A3R7AAA0_9STRA	8.780e-16	62.07	PUM-HD domain-containing protein n=1 Tax=Aphanomyc...	[more]
A0A6G0WN87_9STRA	1.080e-15	60.34	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A485KML4_9STRA	1.090e-15	62.07	Aste57867_9189 protein n=1 Tax=Aphanomyces stellat...	[more]
I4Y6W8_WALMC	1.480e-15	58.33	ARM repeat-containing protein (Fragment) n=3 Tax=W...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..61 e-value: 1.0E-21 score: 79.3
IPR001313	Pumilio RNA-binding repeat	PFAM	PF00806	PUF	coord: 41..59 e-value: 4.2E-5 score: 23.0 coord: 4..34 e-value: 2.1E-6 score: 27.1
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 1..36 score: 8.991
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 37..61 score: 8.361
None	No IPR available	PANTHER	PTHR12537	RNA BINDING PROTEIN PUMILIO-RELATED	coord: 3..60
None	No IPR available	PANTHER	PTHR12537:SF13	PUMILIO HOMOLOGY DOMAIN FAMILY MEMBER 4	coord: 3..60
IPR033133	Pumilio homology domain	PROSITE	PS50303	PUM_HD	coord: 1..61 score: 19.128
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..60

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig142000	contig	H-elongata_contig142000:665..1341 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig142000.2907.1	mRNA_H-elongata_contig142000.2907.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig142000 665..1341 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig142000.2907.1 ID=prot_H-elongata_contig142000.2907.1|Name=mRNA_H-elongata_contig142000.2907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPY
GNYVVQYVLGI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR001313	Pumilio_RNA-bd_rpt
IPR033133	PUM-HD
IPR016024	ARM-type_fold