mRNA_H-elongata_contig1420.2906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1420.2906.1
Unique NamemRNA_H-elongata_contig1420.2906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 153 bits (387), Expect = 1.340e-36
Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 1
Query:   25 GVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRIL--HGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERFGVTKTSTI 741
            GV++ V RP    ++G++ VFK K    G++EKYK RLVAQGF QV+GI Y E+ +P     SIR++L + A   W+  Q+DV  A+L  ++EEEIY+++P  ++ S      L+KA+YGL  A   W K    E +  GF   QAD CVF + +  H  ++                    +   SDL S F + DLGE  + L   +TR R   T++  Q QYI+ + ER G+ +   +
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTK---SDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAECKPV 1262          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A328KP65_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KP65_9BACI)

HSP 1 Score: 141 bits (356), Expect = 3.800e-36
Identity = 72/197 (36.55%), Postives = 117/197 (59.39%), Query Frame = 3
Query:  780 CPQTDSEFEEMRQIPYREIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTDWRAAQKALQYLS------------------AWIDADYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSKSEYVALAEMVNELRQVKEFMTP---PNDVAIKIHEDNEGAIKMAKNRFGSRRMRHVDIKHHIVRDAVDGG 1307
            C  +  + ++M+  PYRE+VGAL W AT TRPDIS A   L +F DNPG   W +A++ L+YL                   A+ D+D+    D+RRS S   +MM+G  I+W S +QK+ A +S+++EY+AL+E + E+  +++ +T       +A ++ EDN+G I ++KNR   +R +H+D++ H  RD ++ G
Sbjct:    1 CATSAEQMQDMQGTPYRELVGALNWIATCTRPDISHAVSSLCRFLDNPGQQHWTSAKRVLKYLKGSSNCGLFFQAKQPPHLIAFSDSDWAGDKDSRRSTSGYTLMMSGSTIAWRSALQKIGACSSTEAEYIALSETMREVIWIRQMLTELGFSQKLATRVFEDNQGCIAISKNRRTDKRTKHIDLRFHFCRDQIEQG 197          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: UPI001EAF45B3 (secreted RxLR effector protein 161-like n=2 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI001EAF45B3)

HSP 1 Score: 140 bits (354), Expect = 5.280e-36
Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 3
Query:  780 CPQTDSEFEEMRQIPYREIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTDWRAAQKALQYLS-----------------AWIDADYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSKSEYVALAEMVNELRQVKEFMTPPNDVAIKIHE-----DNEGAIKMAKNRFGSRRMRHVDIKHHIVRDAVDGG 1307
            CP T+ E + M Q+PYR ++G+LM+ AT TRPDI+ A   L +FNDNPG   W+AA++ L+Y+                   + DAD+G   D RRS +     + GGAISW SR QK  A +S+++EY+AL+E   E    + F+T   +V  K+       DN+ A  MAKN     R +H+DI++H VR++V+ G
Sbjct:    2 CPTTEEERDRMNQVPYRSLIGSLMYLATSTRPDIAHAVSALSQFNDNPGEEHWKAAKRVLRYIKRTEKMEIVFTKTENELIGFSDADWGASIDDRRSYTGYVFRLFGGAISWSSRKQKTVAMSSAEAEYMALSEAAKESIYQRRFLT---EVVGKLKTTLILCDNQSAGLMAKNPVYHERTKHIDIRYHFVRESVERG 196          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.230e-35
Identity = 85/241 (35.27%), Postives = 124/241 (51.45%), Query Frame = 1
Query:    1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVF-RRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERFG 720
            E+      G W +V R      +G R VF +K D++GR+ +YK RLVA+GF+Q  GI + E+ SP     SIR+VL++ AA  ++  QLD D A+L +++++ +Y+E+P     +R     L KA+YGL  A   W K     F   GF    AD CV+ +R  +G +                T  D  +    L + F +K+LG A + LG  I     AGTLK  Q +YI  V +RFG
Sbjct:   16 ELLSHERNGTWTLVPRGTANRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLYVDDMIIAAK--TSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFG 254          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 149 bits (376), Expect = 3.550e-35
Identity = 80/239 (33.47%), Postives = 121/239 (50.63%), Query Frame = 1
Query:   25 GVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERFGVTKTSTI 741
            G W++ E      ++G+R VF +K D+HG++ +YK RLVAQGF Q+ G+ Y ++ SP     ++R  + + A   W+  Q+D+  AYL  ++EEEI++E PE + +   +   L+  +YGL  AG +W K    +    GF  + ADPCV+     G +                  R +   VS L   F +KDLGE    LG  I R R   T+   Q  YI  + ERF  +K + I
Sbjct:  885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTVWVDDIILCGDSESRIDT-TVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERFNYSKINPI 1122          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 148 bits (374), Expect = 6.170e-35
Identity = 87/241 (36.10%), Postives = 128/241 (53.11%), Query Frame = 1
Query:    1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
            EM+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W   F     + GF  +  D C+++++  G+ +                K    +    L   F +KD+GEASY +G  I R R  G L   Q  YI  V ERF
Sbjct:  708 EMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERF 947          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY)

HSP 1 Score: 146 bits (369), Expect = 1.220e-34
Identity = 86/241 (35.68%), Postives = 127/241 (52.70%), Query Frame = 1
Query:    1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
            E D     GVW++V+R  G  V+G + +FKRK D  G++EK+K RLVA+G+ Q  G+ +EE+ SP     SIR +L+++A   ++  Q+DV  A+L  D+EE++Y+E PE +     ++ +  L K++YGL  A   W   F       GF  + ++PCV+ R +H  VV                   +E     L   F +KDLGEASY LG  I R R    L   Q  YI  + E+F
Sbjct:  353 EFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTLYVDDILLAGNDVDMLDE-VKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 592          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A438G5R6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G5R6_VITVI)

HSP 1 Score: 140 bits (352), Expect = 1.620e-34
Identity = 85/241 (35.27%), Postives = 123/241 (51.04%), Query Frame = 1
Query:    1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
            EM       VW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  ++EEE+Y++ PE +  S  +  +  L+K++YGL  A   W   F     +  F  +  D C++ ++  G+ V                K    +    L   F +KD+GEASY +G  I R R  G L   Q  YI  V ERF
Sbjct:    4 EMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPISKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFSFVENVMDQCIYLKV-SGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERF 243          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A6A3H7M5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3H7M5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.700e-34
Identity = 83/239 (34.73%), Postives = 122/239 (51.05%), Query Frame = 1
Query:    1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
            E+      G W ++ R  G   +G R VF +K ++HGR+ +YK RLVA+GF+Q  G+ + E+ S      SIR+VL+++ A  +   QLD D A+L +D++E++++E+P     +      L KA+YGL  A   W +     F   GF    AD CV+ +   GT V               T+   E  V+ L S F +K+LGE  + LG  I   R AGTL   Q +YI  V  RF
Sbjct:   16 ELKAHADNGSWTLIRRAAGVRPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSHVANMNSIRVVLSVVVAEAYVTEQLDTDTAFLNSDLKEQVFMEVPYGITNAENMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFCSCGADQCVYVKGAKGTYVYVCLYVDDMIIAAKTTEEINEVKVA-LKSAFKMKELGETKFILGMEIDHDRMAGTLMIKQTRYIDDVTNRF 253          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY)

HSP 1 Score: 146 bits (369), Expect = 2.570e-34
Identity = 86/241 (35.68%), Postives = 127/241 (52.70%), Query Frame = 1
Query:    1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
            E D     GVW++V+R  G  V+G + +FKRK D  G++EK+K RLVA+G+ Q  G+ +EE+ SP     SIR +L+++A   ++  Q+DV  A+L  D+EE++Y+E PE +     ++ +  L K++YGL  A   W   F       GF  + ++PCV+ R +H  VV                   +E     L   F +KDLGEASY LG  I R R    L   Q  YI  + E+F
Sbjct:  529 EFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTLYVDDILLAGNDVDMLDE-VKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 768          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.340e-3636.10Integrase catalytic domain-containing protein (Fra... [more]
A0A328KP65_9BACI3.800e-3636.55Uncharacterized protein (Fragment) n=1 Tax=Bacillu... [more]
UPI001EAF45B35.280e-3639.39secreted RxLR effector protein 161-like n=2 Tax=Os... [more]
A0A6A3JRZ2_9STRA2.230e-3535.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C3AKI0_9AGAM3.550e-3533.47Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A2N9EM55_FAGSY6.170e-3536.10Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IT45_FAGSY1.220e-3435.68Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A438G5R6_VITVI1.620e-3435.27Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3H7M5_9STRA1.700e-3434.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9I256_FAGSY2.570e-3435.68Uncharacterized protein n=4 Tax=Fagus sylvatica Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1420contigH-elongata_contig1420:463..1956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.5
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog4081.Solyc03g062850.1.1
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1307
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1420.2906.1prot_H-elongata_contig1420.2906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1420 1546..1953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.6668098-UTR-H-elongata_contig1420:462..8041622929843.6668098-UTR-H-elongata_contig1420:462..804Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1420 463..804 -
1691679180.201718-UTR-H-elongata_contig1420:462..8041691679180.201718-UTR-H-elongata_contig1420:462..804Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1420 463..804 -
1622929843.682415-UTR-H-elongata_contig1420:991..15451622929843.682415-UTR-H-elongata_contig1420:991..1545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1420 992..1545 -
1691679180.2140245-UTR-H-elongata_contig1420:991..15451691679180.2140245-UTR-H-elongata_contig1420:991..1545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1420 992..1545 -
1622929843.71502-UTR-H-elongata_contig1420:1953..19561622929843.71502-UTR-H-elongata_contig1420:1953..1956Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1420 1954..1956 -
1691679180.2293239-UTR-H-elongata_contig1420:1953..19561691679180.2293239-UTR-H-elongata_contig1420:1953..1956Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1420 1954..1956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.6968267-CDS-H-elongata_contig1420:1545..19531622929843.6968267-CDS-H-elongata_contig1420:1545..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1420 1546..1953 -
1691679180.2218797-CDS-H-elongata_contig1420:1545..19531691679180.2218797-CDS-H-elongata_contig1420:1545..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1420 1546..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1420.2906.1

>prot_H-elongata_contig1420.2906.1 ID=prot_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGF
RQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVE
EEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*
back to top

mRNA from alignment at H-elongata_contig1420:463..1956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1420.2906.1 ID=mRNA_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1494bp|location=Sequence derived from alignment at H-elongata_contig1420:463..1956- (Himanthalia elongata Himel1 dioecious)
GAGATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCC AAACGGAGAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCG ACAAGCATGGAAGAATCGAGAAGTATAAATGCCGCCTCGTGGCGCAGGGT TTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACTCC TGCGCAGGCCAGCATTAGGATGGTACTCACCATGATCGCGGCTCTCGGCT GGAAGGCGCCGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGACGTG GAGGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGAATCCAGGAA GCAAGACGGCCTACTAAGGAAGGCAATGTACGGACTCGTTCACGCCGGGC TGCTGTGGTAAAAATAGTTCGGGATCGAGTTCGAGGCAAAGGGTTTTTAG ATATCTCAAGCCGACCCATGTGTGTTCCGGCGGATTCTCCACGGAACAGT GGTAGTCATCATCGTAATCTACGACGACGACCTGCTGGTTGCTAGTGCGA CGAAACGTGACGAGGAGCAAGCGGTGAGTGACCTGTGTTCCTGTTTCCCC ATCAAGGATCTCGGGGAGGCTTCATATTACTTGGGATGCCACATCACACG GGGCCGGAACGCCGGGACACTGAAGTTCGACCAGCATCAGTACATACAGC CTGTGGCGGAACGTTTTGGCGTGACGAAGACCAGCACCATCTCGTCTGCG GCAGGAAGAAAAGCCCTTTCGAAACAGACTGCCCGCAAACGGACTCAGAG TTTGAAGAAATGCGGCAGATTCCCTACCGAGAAATCGTTGGGGCCCTAAT GTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGCACACCAAC TGGGGAAATTTAACGACAACCCGGGACCGACAGACTGGAGGGCAGCCCAG AAAGCGCTGCAATATGTTTGGCGCACTCGGGACCTCGGGATCACCTACGG AGGGGAACGGGGGGGGGGGGGGGGGGCACGACGCGCAGGGAAGAAGGAAA CCGCCACCGCCCGCGCACACCCNNNNNNNNNNTTATTCTTTTGGGCCGCG CGCCCCCCCAGGAGCCGCCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG AGTTATCAGCGTGGATAGACGCAGACTACGGCACCTGCCCGGACACGCGC CGCTCAGTGTCGGAAGGGGCGGTGATGATGGCTGGCGGGGCCATCAGTTG GTTCTCACGAGTGCAAAAGGTAACGGCGGCAGCGTCGTCCAAATCGGAAT ACGTCGCACTGGCTGAGATGGTAAACGAGTTGCGACAGGTCAAGGAGTTC ATGACCCCCCCAAACGACGTCGCCATCAAGATACACGAGGACAACGAAGG CGCAATCAAGATGGCGAAAAACCGCTTCGGCAGTCGACGAATGAGGCACG TGGACATCAAGCATCACATTGTCCGCGACGCGGTCGATGGAGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1420:463..1956-

>mRNA_H-elongata_contig1420.2906.1 ID=mRNA_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig1420:463..1956- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAA
CGGAGAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGACA
AGCATGGAAGAATCGAGAAGTATAAATGCCGCCTCGTGGCGCAGGGTTTC
AGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACTCCTGC
GCAGGCCAGCATTAGGATGGTACTCACCATGATCGCGGCTCTCGGCTGGA
AGGCGCCGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGACGTGGAG
GAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGAATCCAGGAAGCA
AGACGGCCTACTAAGGAAGGCAATGTACGGACTCGTTCACGCCGGGCTGC
TGTGGTAAATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAG
CGCCCAAACGGAGAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAA
AATCGACAAGCATGGAAGAATCGAGAAGTATAAATGCCGCCTCGTGGCGC
AGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCG
ACTCCTGCGCAGGCCAGCATTAGGATGGTACTCACCATGATCGCGGCTCT
CGGCTGGAAGGCGCCGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCG
ACGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGAATCC
AGGAAGCAAGACGGCCTACTAAGGAAGGCAATGTACGGACTCGTTCACGC
CGGGCTGCTGTGGTAA
back to top