mRNA_H-elongata_contig142.2904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142.2904.1
Unique NamemRNA_H-elongata_contig142.2904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A6H5KBN7_9PHAE (GH16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN7_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 5.760e-117
Identity = 213/458 (46.51%), Postives = 279/458 (60.92%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITKDAENSA-------TASLYFGGKDS---GCVSSDVWPYQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTKDMWFSGLPDAIYPAPFDKTFHIEIGLAVGGWRQ--SVDSCGA---------AVDTSAMPEEMLVDYVRISQGPSGSWWTPPE------GISTFAYD----RNPRSMSALHLFVLDIIALAACVFGPFMAITGLS----------------RFRFNTWLMGVEIGAFKAANIFYIVSGSFMMAFIAGILFGIISGYLAVKHQAMARWNTVGALSVPTLFMLIDIGMISEIGSRYACWAIFGVLTASVTYAMLAFPAEHHTSVFRVASAATGSCVLKLGLGRLMGTPGEIFKLFDDPVGDRCHESRICQTLGWVSLAMFIVGL 1233
            R+ T  SA+F+HGRVE+ AKV+  G    SG WL+PS+   +    CARV + EI     ++A       TASL FGG +    GC SS  WP + G C+L     V  SD FHVYALEW+E EFRW++DG  YC K  WF+  P   +PAPF+K FH+E+G+AVGG      VDS            A+ + ++P EMLVDYVRI+QGP+G W  P E      G+   A D     +PR++      +++++A++ACV GP+MA+TGLS                R R NT LMG+EIGAFKAAN  Y++SGS++MAF+  + FG++ GYLA+ H+AMARWNTVG L+VP LF+                          VT+A+L FP+EHH   F VA+AATGSCVLKLGLGRL+G  GEIFK+ DDP+GD CH SR+CQ+L +V  AMF +GL
Sbjct:  216 RIGTARSANFVHGRVEISAKVSSRGS---SGFWLMPSDAGTVGHTPCARVAIAEIRAREYHAADSSGPDITASLGFGGYEEDRWGCTSSSSWPDKGGGCSLPAEHGVDWSDGFHVYALEWEEREFRWYVDGRQYCKKSAWFAKHPGD-FPAPFNKAFHLEMGVAVGGGDDVGDVDSAEEEDPSSASTRALHSPSVPPEMLVDYVRIAQGPNGQWVPPLESIAADGGLQPVALDGVTSSSPRALDV----IINVLAVSACVLGPYMAMTGLSKSSSYHPPACSRRFLSRPRTNTILMGMEIGAFKAANASYLISGSYVMAFVGAVTFGMLVGYLALHHRAMARWNTVGGLAVPALFV--------------------------VTFAVLVFPSEHHAKGFVVATAATGSCVLKLGLGRLLGESGEIFKILDDPLGDWCHVSRVCQSLIYVMGAMFFIGL 639
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: D8LGG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG8_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.200e-93
Identity = 158/278 (56.83%), Postives = 200/278 (71.94%), Query Frame = 1 
Query:  451 IGLAVGGWRQSVDSCGA-----------AVDTSAMPEEMLVDYVRISQGPSGSWWTPPE------GISTFAYDRNPRSMSALHLFVLDIIALAACVFGPFMAITGLSRFRFNTWLMGVEIGAFKAANIFYIVSGSFMMAFIAGILFGIISGYLAVKHQAMARWNTVGALSVPTLFMLIDIGMISEIGSRYACWAIFGVLTASVTYAMLAFPAEHHTSVFRVASAATGSCVLKLGLGRLMGTPGEIFKLFDDPVGDRCHESRICQTLGWVSLAMFIVGL 1233
            +G+AVGG     D   A           A+ + ++P EMLVDYVRI+QGP G W  P E      G+   A D   RS   +   +++++A++ACV GP+MA+TGLSR R NT LMG+EIGAFKAAN  Y++SGS++MAF+  + FG++ GYLA+ H+AMARWNTV  L+VP LF+LIDIGMIS+IGSRY CWAIF VLT  VT+A+L FP+EHH   F VA+AATGSCVLKLGLGRL+G  GEIFK+ DDP+GD CH SRICQ+L +V  AMF +GL
Sbjct:    1 MGVAVGGGGDVGDGDSAEEEDPSSASTRALHSPSVPTEMLVDYVRITQGPDGQWVPPLESIAADGGLQPVALDGVTRSSPRMLDVIINLLAVSACVLGPYMAMTGLSRPRTNTILMGMEIGAFKAANASYLISGSYVMAFVGAVTFGMLVGYLALHHRAMARWNTVAGLAVPALFVLIDIGMISDIGSRYVCWAIFFVLT--VTFAVLVFPSEHHAKGFVVATAATGSCVLKLGLGRLLGESGEIFKILDDPLGDWCHVSRICQSLIYVMGAMFFIGL 276
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A359HQY4_9CHLR (Glycosyl hydrolase family 16 n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A359HQY4_9CHLR)

HSP 1 Score: 125 bits (313), Expect = 2.200e-29
Identity = 68/188 (36.17%), Postives = 99/188 (52.66%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITKDAENSATASLYFGGKDSGCVSSDVWPYQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTKDMWFSGLPDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            RL+T   A F +GR+EVRAK+     G W  IW+LP+            ++++E+          +L++G            PY+       L  +     DFHV+++EW+ENE RW++DG  Y   + WF+   ++ YPAPFDK F+I + +AVGG W       GA  DTS  P+ MLVDYVR+ Q
Sbjct:  113 RLNTLTLAQFTYGRIEVRAKLPTT-QGIWPAIWMLPAIGSSPVNGE---IDIMELIGKEPFRVYGTLHYGN-----------PYENQGSWFDLPESATFDQDFHVFSIEWEENEIRWYVDGQMYYKANQWFTSQANSPYPAPFDKPFYILLNVAVGGVW------AGAPDDTSVFPQTMLVDYVRVYQ 279
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BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A850A7L2_9BACT (Glycoside hydrolase family 16 protein n=1 Tax=Calditrichaceae bacterium TaxID=2614252 RepID=A0A850A7L2_9BACT)

HSP 1 Score: 124 bits (312), Expect = 2.980e-29
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITKDAENSATASLYFGGKDSGCVSSDVWPYQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTKDMWFSGLPDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            R+ T    D+ +GR +++AK+  G  G W  IW+LPS+      A+   ++++E+          +L++GG+         WP      T       + S+DFH++ LEWD  EFRW++DG HY T++ W +    A YPAPFD+ FH+ + +AVGG W  + DS      T+  P+ M+VDYVR+ Q
Sbjct:  108 RMRTKYKGDWKYGRFDIKAKLPYG-QGLWPAIWMLPSDWDYGGWAASGEIDIMELLGQEPEKVYGTLHYGGE---------WPGNVHTGTSYTLPGGSFSEDFHLFTLEWDSTEFRWYVDGKHYQTQNEWHTTA--AGYPAPFDRRFHLLLNVAVGGNWPGNPDS------TTVFPQTMMVDYVRVYQ 277
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A7C1GXR7_9BACT (Glycoside hydrolase family 16 protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1GXR7_9BACT)

HSP 1 Score: 124 bits (312), Expect = 3.260e-29
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITKDAENSATASLYFGGKDSGCVSSDVWP---YQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTKDMWFSGLPDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            RL T    D+ +GR ++RAK+  G  G W  IW+LPSE +    A+   ++++EI     N    +L++GG+         WP   Y     +LS  +    +DDFH++ +EWD  +FRW++DG+ Y +++ W +    A YPAPFD+ FH+ + +AVGG W    D+      T+  P++M+VDYVR+ Q
Sbjct:  112 RLRTLRKGDWKYGRFDIRAKLPYGK-GIWPAIWMLPSEWKYGGWAASGEIDIMEILGHEPNKVHGTLHYGGQ---------WPNNVYSGKSYSLSQGS---FADDFHLFTIEWDTTQFRWYVDGIFYQSQNKWHTS--SAPYPAPFDQYFHLLLNVAVGGNWPGDPDN------TTVFPQKMIVDYVRVFQ 281
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: UPI001652A58A (glycoside hydrolase family 16 protein n=1 Tax=Saccharophagus sp. K07 TaxID=2283636 RepID=UPI001652A58A)

HSP 1 Score: 128 bits (321), Expect = 7.850e-29
Identity = 77/194 (39.69%), Postives = 106/194 (54.64%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITK---DAENSATASLYFGGKDSGCVSSDVWP---YQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTKDM--WFSGLPDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRI 555
            RL +    D+ +GR E+RAK+  G  G W  IW+LP++      AS   ++++E        E     +L+FG         D WP   Y   E  L   TN A  DDFHVYA+EW+E E RW++DG H+ T+    W+S        APFD+ FH+ + LAVGG W  +V+  G  +D SA P+EMLVDYVR+
Sbjct:  155 RLRSKDKGDWRYGRFEIRAKLPWG-QGTWPAIWMLPTDQIYGGWASSGEIDIMEAVNLKVGGERRIHGTLHFG---------DNWPNNVYSGEEYVLPGGTNPA--DDFHVYAVEWEEGEIRWYVDGDHFATQTQTGWYSAKALNKLSAPFDQRFHLILNLAVGGDWAGNVNDTG--IDESAFPQEMLVDYVRV 334
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A1C9W7N5_9GAMM (Glucan endo-1,3-beta-glucosidase A1 n=1 Tax=Microbulbifer aggregans TaxID=1769779 RepID=A0A1C9W7N5_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 1.500e-28
Identity = 73/193 (37.82%), Postives = 108/193 (55.96%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITK---DAENSATASLYFGGKDSGCVSSDVWPYQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTK--DMWFSGLPDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            RL + G  D+ +GR E+RAK+ RG  G W  IW+LP++ +    AS   ++++E        E+    +L++GG     V S   PY+       L      +DDFH YALEW++ E RW++DG HY T+  + W+S        APFD+ FH+ + LAVGG W   V+  G  +D +A P++M VDYVR+ Q
Sbjct:  132 RLRSAGKGDWQYGRFEIRAKLPRG-QGTWPAIWMLPTDWEYGKWASSGEIDIMEAVNLHVGGEDRVHGTLHYGGPAPENVYSGE-PYR-------LPDGANPADDFHQYALEWEQGEIRWYVDGEHYATQTSEGWYSTAEPDDPHAPFDRRFHLLLNLAVGGNWAGKVNDTG--IDETAFPQQMEVDYVRVYQ 313
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A2E0SBX8_9BACT (Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2E0SBX8_9BACT)

HSP 1 Score: 122 bits (305), Expect = 2.360e-28
Identity = 65/187 (34.76%), Postives = 99/187 (52.94%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITKDAENSATASLYFGGKDSGCVSSDVWPYQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTKDMWFSGLPDAIYPAPFDKTFHIEIGLAVGGWRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            RL T    D+ +GR E+RAKV  G  G W  IW+LP++++    A    ++++E+     N    +L+FG         D WP         +  +   S+DFH++ALEW+  E RW++DG HY TK  W S    A +PAPFD+ FH+ + L++GG        G   D +  P++  +DYVR+ Q
Sbjct:   97 RLRTKHRGDWKYGRFEIRAKVPEGK-GMWPAIWMLPTDEKYGSWALSGEIDIMELDGAKPNHVLGTLHFG---------DQWPGNRQSSGEYVLKDGKFSEDFHIFALEWERGEMRWYVDGEHYQTKTKWDSKA--APFPAPFDQRFHLLLNLSIGG-----RLVGTPDDKTVFPQKFEIDYVRVFQ 266
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A6G8DEP5_9GAMM (Family 16 glycosylhydrolase n=2 Tax=Microbulbifer TaxID=48073 RepID=A0A6G8DEP5_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 2.390e-28
Identity = 73/195 (37.44%), Postives = 108/195 (55.38%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITK---DAENSATASLYFGGKDSGCVSSDVWPYQ--AGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCT--KDMWFSGLPDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            RL T G  D+ +GR E+RAK+ +G  G W   W+LPSE +         ++++E        E+    +L++G         D WP    +GE    +   +  +DDFH YA+EW+E E RW++DG HY T  KD W++        APFD++FH+ + LAVGG W  SV+  G  +D SA P+E ++DYVR+ Q
Sbjct:  142 RLRTKGMGDWKYGRFEMRAKLPQG-QGSWPAFWMLPSEWKYGSWPLSGEIDILEAVNLKVGGEDRIHGTLHYG---------DAWPGNKYSGEA-YQIPGGLNPADDFHTYAVEWEEGEIRWYVDGDHYATQTKDGWYTSAALDNANAPFDESFHLILNLAVGGNWPASVNDTG--IDESAFPQEFVIDYVRVYQ 323
[Close]
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Match: A0A1G9DEW2_9GAMM (Glycosyl hydrolases family 16 n=1 Tax=Microbulbifer yueqingensis TaxID=658219 RepID=A0A1G9DEW2_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 3.260e-28
Identity = 75/194 (38.66%), Postives = 109/194 (56.19%), Query Frame = 1 
Query:    1 RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARVNVVEITK---DAENSATASLYFGGKDSGCVSSDVWPYQAGECTLSLATNVALSDDFHVYALEWDENEFRWFLDGMHYCTK--DMWFSGL-PDAIYPAPFDKTFHIEIGLAVGG-WRQSVDSCGAAVDTSAMPEEMLVDYVRISQ 561
            RL + G  D+ +GR E+RAK+ RG  G W  +W+LP++      AS   ++++E        E+    +L++GG     V S   PY+       L      +D FH YALEW+E E RW++DG HY T+  D W+S   PD+ + APFD+ FH+ + LAVGG W    +  G  +D SA P++M VDYVR+ Q
Sbjct:  139 RLRSAGKGDWKYGRFEIRAKLPRG-QGSWPAVWMLPTDWDYGRWASSGEIDIMEAVNLHVGGEDRVHGTLHYGGPSPENVHSGE-PYR-------LPDGANPADGFHEYALEWEEGEIRWYVDGDHYATQTSDGWYSTAEPDSPH-APFDRRFHLLLNLAVGGNWAGKENDTG--IDESAFPQQMEVDYVRVYQ 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142.2904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBN7_9PHAE5.760e-11746.51GH16 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LGG8_ECTSI1.200e-9356.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A359HQY4_9CHLR2.200e-2936.17Glycosyl hydrolase family 16 n=2 Tax=Chloroflexi b... [more]
A0A850A7L2_9BACT2.980e-2935.11Glycoside hydrolase family 16 protein n=1 Tax=Cald... [more]
A0A7C1GXR7_9BACT3.260e-2935.60Glycoside hydrolase family 16 protein n=1 Tax=bact... [more]
UPI001652A58A7.850e-2939.69glycoside hydrolase family 16 protein n=1 Tax=Sacc... [more]
A0A1C9W7N5_9GAMM1.500e-2837.82Glucan endo-1,3-beta-glucosidase A1 n=1 Tax=Microb... [more]
A0A2E0SBX8_9BACT2.360e-2834.76Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Rhodopi... [more]
A0A6G8DEP5_9GAMM2.390e-2837.44Family 16 glycosylhydrolase n=2 Tax=Microbulbifer ... [more]
A0A1G9DEW2_9GAMM3.260e-2838.66Glycosyl hydrolases family 16 n=1 Tax=Microbulbife... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142contigH-elongata_contig142:959..5146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score124.8
Seed ortholog evalue9.4e-26
Seed eggNOG ortholog672.VV93_v1c31410
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs1NFHX@1224,1RRPK@1236,1XVGN@135623,COG2273@1,COG2273@2
COG Functional cat.G
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglycosyl hydrolase, family 16
Ec32 orthologEc-16_003980.1
Exons9
Model size1233
Cds size1233
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.384872-CDS-H-elongata_contig142:958..10101622929843.384872-CDS-H-elongata_contig142:958..1010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 959..1010 -
1691679180.0289626-CDS-H-elongata_contig142:958..10101691679180.0289626-CDS-H-elongata_contig142:958..1010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 959..1010 -
1622929843.3956392-CDS-H-elongata_contig142:1297..14731622929843.3956392-CDS-H-elongata_contig142:1297..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 1298..1473 -
1691679180.0397089-CDS-H-elongata_contig142:1297..14731691679180.0397089-CDS-H-elongata_contig142:1297..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 1298..1473 -
1622929843.4074562-CDS-H-elongata_contig142:2035..21131622929843.4074562-CDS-H-elongata_contig142:2035..2113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 2036..2113 -
1691679180.0484421-CDS-H-elongata_contig142:2035..21131691679180.0484421-CDS-H-elongata_contig142:2035..2113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 2036..2113 -
1622929843.418463-CDS-H-elongata_contig142:2407..25241622929843.418463-CDS-H-elongata_contig142:2407..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 2408..2524 -
1691679180.068083-CDS-H-elongata_contig142:2407..25241691679180.068083-CDS-H-elongata_contig142:2407..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 2408..2524 -
1622929843.4300487-CDS-H-elongata_contig142:2743..28341622929843.4300487-CDS-H-elongata_contig142:2743..2834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 2744..2834 -
1691679180.0856683-CDS-H-elongata_contig142:2743..28341691679180.0856683-CDS-H-elongata_contig142:2743..2834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 2744..2834 -
1622929843.4436078-CDS-H-elongata_contig142:3531..36891622929843.4436078-CDS-H-elongata_contig142:3531..3689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 3532..3689 -
1691679180.0956767-CDS-H-elongata_contig142:3531..36891691679180.0956767-CDS-H-elongata_contig142:3531..3689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 3532..3689 -
1622929843.4572227-CDS-H-elongata_contig142:4117..43281622929843.4572227-CDS-H-elongata_contig142:4117..4328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 4118..4328 -
1691679180.1054692-CDS-H-elongata_contig142:4117..43281691679180.1054692-CDS-H-elongata_contig142:4117..4328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 4118..4328 -
1622929843.4705465-CDS-H-elongata_contig142:4478..46661622929843.4705465-CDS-H-elongata_contig142:4478..4666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 4479..4666 -
1691679180.1159477-CDS-H-elongata_contig142:4478..46661691679180.1159477-CDS-H-elongata_contig142:4478..4666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 4479..4666 -
1622929843.4818604-CDS-H-elongata_contig142:4984..51461622929843.4818604-CDS-H-elongata_contig142:4984..5146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 4985..5146 -
1691679180.1356122-CDS-H-elongata_contig142:4984..51461691679180.1356122-CDS-H-elongata_contig142:4984..5146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 4985..5146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142.2904.1prot_H-elongata_contig142.2904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142 959..5146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142.2904.1

>prot_H-elongata_contig142.2904.1 ID=prot_H-elongata_contig142.2904.1|Name=mRNA_H-elongata_contig142.2904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=411bp
RLSTFGSADFLHGRVEVRAKVARGGWGGWSGIWLLPSEDQGLPQASCARV
NVVEITKDAENSATASLYFGGKDSGCVSSDVWPYQAGECTLSLATNVALS
DDFHVYALEWDENEFRWFLDGMHYCTKDMWFSGLPDAIYPAPFDKTFHIE
IGLAVGGWRQSVDSCGAAVDTSAMPEEMLVDYVRISQGPSGSWWTPPEGI
STFAYDRNPRSMSALHLFVLDIIALAACVFGPFMAITGLSRFRFNTWLMG
VEIGAFKAANIFYIVSGSFMMAFIAGILFGIISGYLAVKHQAMARWNTVG
ALSVPTLFMLIDIGMISEIGSRYACWAIFGVLTASVTYAMLAFPAEHHTS
VFRVASAATGSCVLKLGLGRLMGTPGEIFKLFDDPVGDRCHESRICQTLG
WVSLAMFIVGL
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mRNA from alignment at H-elongata_contig142:959..5146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142.2904.1 ID=mRNA_H-elongata_contig142.2904.1|Name=mRNA_H-elongata_contig142.2904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4188bp|location=Sequence derived from alignment at H-elongata_contig142:959..5146- (Himanthalia elongata Himel1 dioecious)
AGACTAAGCACCTTCGGCTCGGCAGACTTCTTGCATGGACGCGTGGAAGT
GCGCGCGAAGGTCGCCCGAGGAGGTTGGGGGGGCTGGTCTGGCATTTGGC
TGTTGCCGTCAGAGGACCAAGGCTTGCCTCAAGCGTCCTGCGCTCGAGTT
AATGTTGTGGAGGTAAAACGATAAATTGGAGCTTTATGACCACCGGCTGT
TTTTTCGGCAGCCAATGTTTATTGACATGTACTGAGCGCCACCGTAAGTT
TTGAACTATACTGAAGTGTGTGTCGGACTTTGGGCGCAATGGTGCAGTGG
GAAAATACGCAAGACACCACCAGAGGGGGGGGTCAACCAGTGGAATACAC
ACTGAGAGTCGGAGTTGCGTTGTTCGTCCACCAAGTGAGCATAAATAGAA
CCCTTAGGCCAATATTGTAAATTTTACAGTAAGGGCTGCTCCACCACCGC
AAACTCCTTCCTGGATTTCCTCCCTCGCAGATTACCAAAGATGCCGAGAA
CTCAGCAACTGCCTCCTTATATTTTGGGGGGAAAGACTCTGGATGTGTGA
GCTCGGACGTTTGGCCCTACCAGGCCGGTGAATGTACACTATCTCTTGCG
ACGAACGTTGCTTTGAGCGATGACTTCCACGTCTACGCCTTGGAGTGGGA
TGAAAACGAATTCAGATGGTGAGCTTGTTACCTAAAGCAGCCGAATGCAT
GTCCTCCATATGCTTGATGCATCGATAAGCCGACACGTCATTTTTTTTAT
GAAGATAGGAAGGGTAAGCCCTAACAATTTTATTTTACATTTTGGCTTCG
ATTGGACGAACGATGCAGGTTCTTGGACGGGATGCATTATTGCACAAAGG
ATATGTGGTTTTCGGGCCTCCCTGACGCGATCTACCCGGCCCCGTTCGAC
AAAACGTTCCACATAGAGATTGGGCTAGCGGTGGGGGGTTGGAGGCAGAG
CGTGGATTCGTGCGGTGCAGCTGTGGACACGAGTGCTATGCCCGAAGAAA
TGCTTGTCGACTACGTAAGGATAAGTCAGGTGCACGAGTAAGACGAGACT
GTCGTATTTAGTGGCTGCGTTCAAGCACTTGATCATGAACATCTTATTGG
TGGCTAGCACAGAATGGTGGCGATTAAAATGAACGCTTCCCGCGAGCGGC
TGGCCAACACCAAATATTTTACGCTCGTTTGAAGTCATTCGACCTATCGG
TATTTGCGCGAAGATATTTGGACGAGTACATATCTACGACATTTTTACCA
CATCTCCCTCGGTACAGATCAAGGATACAGTCTTTGAAATATGGTAACCA
CCACATCGCGCACTAGATAAATTAAATGAAAAAAATGACAAGCCGAATAT
TCCTTTGTAGTGCTGCCTAGTTGAGCTCCTGTGCGAGACATTCTTCCGCC
ATGCGCTTCTTCTTCCTCGCCTAACTGGGATATATTTTTCTCTTTCTTGA
ATGACAGGGCCCGTCGGGATCGTGGTGGACACCTCCTGAAGGCATCTCCA
CATTTGCGTACGACCGAAATCCGAGGTCAATGTCAGCATTGCACCTCTTT
GTGCTGGACATAATCGCTCTGGCGGCGTGCGTGTTTGGACCTTTCATGGC
AATTACGGGATTGAGGTGAGCTAAGCATTTCGCATCTTCGCGAAGACGCT
TGTACTGATAATACTGCAGCACAAGCTAATTCATATTGTTACTTGATGGA
TTTGGTCACGAACGGAGGCTCATCTTGCAGCAGGTTTATGCAAACTTTGC
GTGAACCTGCGTCTTCATATTATTTTCCATCCGAGCAGTCGTTCGAACAG
GAAGTGTTCCATGGTCACTGACACCTTGCCGGTATCTGATTACATCCATT
TATCAGTTTCAGTGCAAGTATACAAGTTTGTAGATTGATAATAGGCCTGA
TCCGCATAATGTGCAAACAACATGATGATGTTCAAACCCCCCGCATGCGG
CTCGGGATTAAGCTGAGTTGAGAGAACATAATATATAATCATTTATGAAA
TAGACCTCAGTTAGCAGGATAACATTTACGAGGAGGAATGAGAACGGATC
GAACCAATGCACATGTATTATTCTCTAGAATGCTAAGACCCTGAAGGCTA
CTTCCAAAACCACCCTATATGAACCATGGTAATAGCTGATAGATGATGTA
GTGGATACTATATCGTAATAATATACCCTCTACGCTCGTGAGAATCGTGG
TGTAGTACGATCCAGGGTTAAACCTGCGTAAACGTTGTTAAGTTGGTTCA
TTGAGGACGATGGCCACGCGCTCGACGACTTTGTCTTCTTGATATATTAC
GTCATTCTGCAGCCGCTTTCGCTTCAACACGTGGCTAATGGGAGTAGAGA
TCGGCGCCTTCAAGGCTGCCAATATATTCTACATTGTCTCGGGGAGTTTC
ATGGTGAGGAAATTGGTTACTTATGATCACGCTTAGATTCACGACAAATA
CTGTTTTCGACCTGATGAACGTGTATTTGGAGAGTCTCGTGGCACACACC
TTAACAAATGGTAAGAAACAAACATACACAACCGCCTCCCCACACACCCG
ACCCCTGCCTCTGCATAATTTCGCCTCGTCTCTCCGCTATTTTTTCGTGA
TCTATTCCGCCTTCTTCTGCAGATGGCCTTCATCGCTGGCATCTTGTTTG
GCATCATTTCTGGATATCTGGCCGTCAAACATCAAGCAATGGCCCGCTGG
AATACGGTGGGGGCGTTGTCGGTGCCTACACTTTTCATGGTACGCGTTTC
AAATATAAGTAGTTGCACTTGTTTACATCCCTCGATATCGTGGTTTGCTG
TTTTGGGGGTCATGTACAGGACCCATGTCACTGCATCTTAGCAATACAAC
TTACGTGGTGGTGGTCCTCTATAAGCAAATCCAATGCGTTGCTAGACATA
GCTGGATTATAATGTCGCCGCTTTACGTTAAGCTCTAAGCAAGACTCTCA
AGTATAAAAGCGCCCATCGCCGCGAACGACTTTGCACTGTTTGGTCATCT
CCCTTCCTGCTGCTACGCTCCACGCGTAACCAGCTGATAGACATCGGCAT
GATATCGGAAATCGGATCCCGGTACGCCTGCTGGGCCATCTTCGGCGTCC
TCACGGCAAGTGTTGAACTGTCTATTATTGTCGCCGTGTCGTGCGGTGGC
AGCAGCCCCAACGTAACCTCGACAAAGTGCACGACATCTGGCGCATTGCG
GTTACGTACTGTAGTTGCGAAGTTAATGTTAGCGTTACTCCTTTTTCAAA
ACAACGCTCGACTACAGTAGGGTAAGCTTCACGGCAACTCTCTCTCATTC
TTCATCGTAACCGGCGCTACGGACGGCAACTCCCTTGCCTACATAAAAAA
ACTATGAAAAAAATAATCGTACATTACGCAGCGTGAGCTTGGAGGATTCG
TGCCAAAGAAGAATTGGTGATTAAGCGAACTCGAATGCCTATCCCACGAA
GCACAATTTTTACTGACAGAAGAAAGATGACAATGCGCTATTAACGACCG
GTTCCCCTAAGCGTGCGACTACACGCCTCACTGGGATCTTCAAAAATACT
GCTTGAGACCCTTACCGCTGTCGCTCGCACAACAAAACCATGCGCTTTCG
TACGTGACCGTAAAACTACAAGTTTACTGATTTTTAAAAGCCGCACACGT
TCTTCCTGTGCTTCCCATGGTAGGTGACGTACGCAATGTTAGCTTTCCCA
GCGGAGCACCACACGAGCGTCTTCAGAGTAGCGTCAGCTGCAACGGGCAG
CTGTGTGTTAAAGCTTGGTCTCGGGCGGCTGATGGGCACGCCTGGAGAGA
TCTTCAAGCTTTTCGATGATCCCGTTGGGGATCGATGCCACGAGTCGAGG
TTAGAGCACTTCCGTTGTAAGATGCTGTGGGAATCAGTAGCGTAGCATCC
CAATAAATGCAAGTGATGTATGCCACGAGGAACGCGAGTGGTTAAATATA
TATTCGTGTAGACATGTTAAGACTCACGTGTTCGAGAGCTCAAATTTTGA
TCACAGCGGTGACAGCTCAATTAGCGCGAGGGTAAATTCTCTGTGCCTTC
TCCGGTGGCTCATTTTCTTATTATTAGCTTCCTACCCATTGTATCATAAA
CCGGGCACGTGCTGGCATGCCCCATCCCTCGTCCAGAATATGCCAAACGC
TTGGCTGGGTGTCGTTGGCAATGTTCATCGTCGGCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig142:959..5146-

>mRNA_H-elongata_contig142.2904.1 ID=mRNA_H-elongata_contig142.2904.1|Name=mRNA_H-elongata_contig142.2904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2466bp|location=Sequence derived from alignment at H-elongata_contig142:959..5146- (Himanthalia elongata Himel1 dioecious)
AGACTAAGCACCTTCGGCTCGGCAGACTTCTTGCATGGACGCGTGGAAGT
GCGCGCGAAGGTCGCCCGAGGAGGTTGGGGGGGCTGGTCTGGCATTTGGC
TGTTGCCGTCAGAGGACCAAGGCTTGCCTCAAGCGTCCTGCGCTCGAGTT
AATGTTGTGGAGAGACTAAGCACCTTCGGCTCGGCAGACTTCTTGCATGG
ACGCGTGGAAGTGCGCGCGAAGGTCGCCCGAGGAGGTTGGGGGGGCTGGT
CTGGCATTTGGCTGTTGCCGTCAGAGGACCAAGGCTTGCCTCAAGCGTCC
TGCGCTCGAGTTAATGTTGTGGAGATTACCAAAGATGCCGAGAACTCAGC
AACTGCCTCCTTATATTTTGGGGGGAAAGACTCTGGATGTGTGAGCTCGG
ACGTTTGGCCCTACCAGGCCGGTGAATGTACACTATCTCTTGCGACGAAC
GTTGCTTTGAGCGATGACTTCCACGTCTACGCCTTGGAGTGGGATGAAAA
CGAATTCAGATGATTACCAAAGATGCCGAGAACTCAGCAACTGCCTCCTT
ATATTTTGGGGGGAAAGACTCTGGATGTGTGAGCTCGGACGTTTGGCCCT
ACCAGGCCGGTGAATGTACACTATCTCTTGCGACGAACGTTGCTTTGAGC
GATGACTTCCACGTCTACGCCTTGGAGTGGGATGAAAACGAATTCAGATG
GTTCTTGGACGGGATGCATTATTGCACAAAGGATATGTGGTTTTCGGGCC
TCCCTGACGCGATCTACCCGGCCCCGTTCGACAAAACGTTCCACATAGAG
ATTGGGCTAGCGGTGGGGGGTTGGAGGCAGAGCGTGGATTCGTGCGGTGC
AGCTGTGGACACGAGTGCTATGCCCGAAGAAATGCTTGTCGACTACGTAA
GGATAAGTCAGGTTCTTGGACGGGATGCATTATTGCACAAAGGATATGTG
GTTTTCGGGCCTCCCTGACGCGATCTACCCGGCCCCGTTCGACAAAACGT
TCCACATAGAGATTGGGCTAGCGGTGGGGGGTTGGAGGCAGAGCGTGGAT
TCGTGCGGTGCAGCTGTGGACACGAGTGCTATGCCCGAAGAAATGCTTGT
CGACTACGTAAGGATAAGTCAGGGCCCGTCGGGATCGTGGTGGACACCTC
CTGAAGGCATCTCCACATTTGCGTACGACCGAAATCCGAGGTCAATGTCA
GCATTGCACCTCTTTGTGCTGGACATAATCGCTCTGGCGGCGTGCGTGTT
TGGACCTTTCATGGCAATTACGGGATTGAGGGCCCGTCGGGATCGTGGTG
GACACCTCCTGAAGGCATCTCCACATTTGCGTACGACCGAAATCCGAGGT
CAATGTCAGCATTGCACCTCTTTGTGCTGGACATAATCGCTCTGGCGGCG
TGCGTGTTTGGACCTTTCATGGCAATTACGGGATTGAGCCGCTTTCGCTT
CAACACGTGGCTAATGGGAGTAGAGATCGGCGCCTTCAAGGCTGCCAATA
TATTCTACATTGTCTCGGGGAGTTTCATGCCGCTTTCGCTTCAACACGTG
GCTAATGGGAGTAGAGATCGGCGCCTTCAAGGCTGCCAATATATTCTACA
TTGTCTCGGGGAGTTTCATGATGGCCTTCATCGCTGGCATCTTGTTTGGC
ATCATTTCTGGATATCTGGCCGTCAAACATCAAGCAATGGCCCGCTGGAA
TACGGTGGGGGCGTTGTCGGTGCCTACACTTTTCATGATGGCCTTCATCG
CTGGCATCTTGTTTGGCATCATTTCTGGATATCTGGCCGTCAAACATCAA
GCAATGGCCCGCTGGAATACGGTGGGGGCGTTGTCGGTGCCTACACTTTT
CATGCTGATAGACATCGGCATGATATCGGAAATCGGATCCCGGTACGCCT
GCTGGGCCATCTTCGGCGTCCTCACGGCAAGTCTGATAGACATCGGCATG
ATATCGGAAATCGGATCCCGGTACGCCTGCTGGGCCATCTTCGGCGTCCT
CACGGCAAGTGTGACGTACGCAATGTTAGCTTTCCCAGCGGAGCACCACA
CGAGCGTCTTCAGAGTAGCGTCAGCTGCAACGGGCAGCTGTGTGTTAAAG
CTTGGTCTCGGGCGGCTGATGGGCACGCCTGGAGAGATCTTCAAGCTTTT
CGATGATCCCGTTGGGGATCGATGCCACGAGTCGAGGTGACGTACGCAAT
GTTAGCTTTCCCAGCGGAGCACCACACGAGCGTCTTCAGAGTAGCGTCAG
CTGCAACGGGCAGCTGTGTGTTAAAGCTTGGTCTCGGGCGGCTGATGGGC
ACGCCTGGAGAGATCTTCAAGCTTTTCGATGATCCCGTTGGGGATCGATG
CCACGAGTCGAGAATATGCCAAACGCTTGGCTGGGTGTCGTTGGCAATGT
TCATCGTCGGCCTAAATATGCCAAACGCTTGGCTGGGTGTCGTTGGCAAT
GTTCATCGTCGGCCTA
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