mRNA_H-elongata_contig14191.2900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14191.2900.1
Unique NamemRNA_H-elongata_contig14191.2900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14191.2900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14191contigH-elongata_contig14191:5186..6055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size428
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14191.2900.1prot_H-elongata_contig14191.2900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14191 5389..6055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.1900928-UTR-H-elongata_contig14191:5185..53881622929843.1900928-UTR-H-elongata_contig14191:5185..5388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14191 5186..5388 +
1691679179.9573367-UTR-H-elongata_contig14191:5185..53881691679179.9573367-UTR-H-elongata_contig14191:5185..5388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14191 5186..5388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.205194-CDS-H-elongata_contig14191:5388..55261622929843.205194-CDS-H-elongata_contig14191:5388..5526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14191 5389..5526 +
1691679179.968154-CDS-H-elongata_contig14191:5388..55261691679179.968154-CDS-H-elongata_contig14191:5388..5526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14191 5389..5526 +
1622929843.2210977-CDS-H-elongata_contig14191:5968..60551622929843.2210977-CDS-H-elongata_contig14191:5968..6055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14191 5969..6055 +
1691679179.981877-CDS-H-elongata_contig14191:5968..60551691679179.981877-CDS-H-elongata_contig14191:5968..6055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14191 5969..6055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14191.2900.1

>prot_H-elongata_contig14191.2900.1 ID=prot_H-elongata_contig14191.2900.1|Name=mRNA_H-elongata_contig14191.2900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MLPKSVVLGGGHMKNALCNRLALQDGRAGSQVRSSPVVESLDVLADLCKG
VDIVYLLTALDLPAMPNHISLRIFR
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mRNA from alignment at H-elongata_contig14191:5186..6055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14191.2900.1 ID=mRNA_H-elongata_contig14191.2900.1|Name=mRNA_H-elongata_contig14191.2900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at H-elongata_contig14191:5186..6055+ (Himanthalia elongata Himel1 dioecious)
CTTTGACGTAGAACTTGAAGGTTGCCGTTTTCGCCCACGTATTCAGCCAG
GCGGTTGTGCAGTGGGTGGGGGTGGGTAGTAAATTGGGCTCTCGTAAGGA
GGATCCCCTCGTGTTCATATATTTGCCAATCGATTTTCCTTTTTCTTCGG
CATCCGATCATTTTGAACCATTTTGCTCTGAGGGAAACACAAACTTCAGA
GTAATGTTGCCGAAGAGCGTGGTGCTGGGCGGTGGTCACATGAAGAATGC
TTTGTGCAACCGACTCGCCCTCCAAGATGGACGAGCGGGTTCGCAAGTGA
GGTCTTCCCCTGTTGTGGAAAGCTTGGACGTACTGGCTGATGTGAGTCGT
TTGAAGGCAACCGGGGAAAGAACGCCCGCTTGTTTAGCCTCCTCAACTCT
TCTTCGCCATTATTATTTTCAAAACATATGAACTCATTCCAACCCTCCGA
ATATCCACGCCTTCATAGCACCGTGAGATATGTAGTCCAGGGACCAACTA
TCGTCAGGTTCGAATGTGGACATTACTATACCTTTGAGCACAAAGTCGTC
ACATTTGATGATTCGTGACAATCAATTTCCATGACACCAGACACCACATC
GCCCTTGTTGATACAGCTGAGAGGGTTGTCACTGTCACCAGCGAATATGC
CCACCGAGCTCTATGCAAACCAGTCTTTGCTGAAAGCCCACCGAGGGCAT
CAAATGTGTAGGTATGGTATACTGTATATGAGGTTCATATCGACTACGTG
ACGCCCTCGACTGCGTTTTTAAATGGATGGCAGCTCTGCAAGGGCGTGGA
CATCGTCTACCTCCTGACAGCGCTCGATCTTCCTGCCATGCCGAACCACA
TCAGTTTGCGCATCTTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig14191:5186..6055+

>mRNA_H-elongata_contig14191.2900.1 ID=mRNA_H-elongata_contig14191.2900.1|Name=mRNA_H-elongata_contig14191.2900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig14191:5186..6055+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCCGAAGAGCGTGGTGCTGGGCGGTGGTCACATGAAGAATGCTTT
GTGCAACCGACTCGCCCTCCAAGATGGACGAGCGGGTTCGCAAGTGAGGT
CTTCCCCTGTTGTGGAAAGCTTGGACGTACTGGCTGATATGTTGCCGAAG
AGCGTGGTGCTGGGCGGTGGTCACATGAAGAATGCTTTGTGCAACCGACT
CGCCCTCCAAGATGGACGAGCGGGTTCGCAAGTGAGGTCTTCCCCTGTTG
TGGAAAGCTTGGACGTACTGGCTGATCTCTGCAAGGGCGTGGACATCGTC
TACCTCCTGACAGCGCTCGATCTTCCTGCCATGCCGAACCACATCAGTTT
GCGCATCTTCAGGCTCTGCAAGGGCGTGGACATCGTCTACCTCCTGACAG
CGCTCGATCTTCCTGCCATGCCGAACCACATCAGTTTGCGCATCTTCAGG
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