mRNA_H-elongata_contig141874.2898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141874.2898.1
Unique NamemRNA_H-elongata_contig141874.2898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.960e-74
Identity = 147/323 (45.51%), Postives = 186/323 (57.59%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNH-----------AGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVET----------------------DNALNTGG---------------LGEIDRSTDGAG--------------QVGSRGCRRRR---LRLSDPEGFLFSNSVISSVFCKLD 774
            VEA T FG+W++PG+ PLP +ETCADMYR AS +     +  ++ISNYARPGF+S+HNRAYWENVPFLAFGNGAAS+VDG RFSRPRGL +YGQWV EL   GW+ AT     A+              AG +++  SREA +R                DAL +D+MLGFRLKEGLDL  + +KYG  A ++VEEG+T+G+R+GWV+RD                          D+ +  GG               +G+  R++ G G              +V S G  R     LRLSDP+GFLFSNSVISSVFC+LD
Sbjct:  272 VEAGTPFGRWFSPGEAPLPEDETCADMYRTASGVLGQAGYDHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGYRFSRPRGLPEYGQWVGELEEEGWDKATGAPRRAACEEVLPGGGGMGDGAGAEESRPSREALER----------------DALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRDTAARGSRGGDAGAGGEKGGRNVGRVDDDFVYDGGRGSSSTLGAGSAAGDVGDHGRTSPGRGFPDDRSGGQEDRRAEVASDGGPRGEWGTLRLSDPDGFLFSNSVISSVFCELD 578          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 8.570e-74
Identity = 146/325 (44.92%), Postives = 180/325 (55.38%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHA-----------GLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDN-----------------------------------------ALNTG---------------GLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLD 774
            VEA T FG+W++PG+ PLP +ETCADMYR AS +     +  ++ISNYARPGF+S+HNRAYWENVPFLAFGNGAAS+VDG RFSRPRGL +YGQWV EL   GW  AT      +               G++++  SREA +R                DAL +D+MLGFRLKEGLDL  + +KYG  A ++VEEG+T+G+R GWV+RD   T +                                         A N G               G G  DR+ + A   G RG     LRLSDP+GFLFSNSVISSVFC+LD
Sbjct:  213 VEAGTPFGRWFSPGEAPLPEDETCADMYRTASRVLGRAGYGHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVGELEEEGWAKATGAPRRTACEEVLPGGGGMGDGGGVEESRPSREALER----------------DALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRDAAATGSHGGDVGAGGEKSGRNVDRVDDDFVYDGGRRSSSSTLGAGSAAGNVGDHGRTSPGRGLPDYRGGGHEDRTAEVASNSGPRG-EWGTLRLSDPDGFLFSNSVISSVFCELD 520          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: K9VZK7_9CYAN (Heme chaperone HemW n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VZK7_9CYAN)

HSP 1 Score: 159 bits (401), Expect = 2.350e-42
Identity = 94/259 (36.29%), Postives = 144/259 (55.60%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDE 777
            +E+ TAFG+ Y PG  PLP +ET A+MYR A  +     +  ++ISNY++PG++ +HNR YWEN P+ AFG GA+SYVDG RF+RPR   +Y +WV +L               + N+   +  ++S                      + L E +MLG R+ EGL L  L  ++G   I+++ +   D  ++GWV  ++++ +  L    LGEI  +     Q  + G    R+RLSDPEGFLFSN++++++F KL E
Sbjct:  217 IESVTAFGRQYQPGDKPLPTDETAANMYRLAQQVLTSKGYQHYEISNYSQPGYQCRHNRVYWENRPYYAFGMGASSYVDGCRFTRPRKTREYYEWVQQL---------------TQNNGTFECPQIS--------------------ENEVLLETLMLGLRMAEGLSLQTLAEQFGEETIQQIWDCLQDYCKQGWV--EILDKNCGLIK--LGEIKYNN----QFPNAG----RIRLSDPEGFLFSNTILATLFSKLGE 428          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: K9WMG2_9CYAN (Heme chaperone HemW n=4 Tax=Oscillatoriales TaxID=1150 RepID=K9WMG2_9CYAN)

HSP 1 Score: 158 bits (400), Expect = 3.990e-42
Identity = 101/258 (39.15%), Postives = 136/258 (52.71%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLD 774
            +E  TAFG+ Y PG  PLP ++T A MYR A  +     +  ++ISNYA PG + +HNR YWEN P+  FG GAASYV GRRF+RPR   DY  WV +LI    +G              L + ELS                      D L E +MLG RL EG++L  L+ K+G + ++ +         +GW+  +VVE D A+       ID+      ++ S G    RLRLSDPEGFLFSN+V++ +F  LD
Sbjct:  232 IEPVTAFGRQYAPGAKPLPTDDTAAQMYRLAQQILTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVQGRRFTRPRTRWDYYAWVQQLIEA--DGV-------------LDEPELS--------------------ETDVLLETLMLGLRLAEGVNLSTLIQKFGDKTLEPIWTALHPYFYKGWI--EVVEEDRAV-------IDQPNPQ--KLPSNG----RLRLSDPEGFLFSNTVLADLFKNLD 439          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A6P0P2T1_9CYAN (Heme chaperone HemW n=14 Tax=Okeania TaxID=1458928 RepID=A0A6P0P2T1_9CYAN)

HSP 1 Score: 158 bits (399), Expect = 5.180e-42
Identity = 97/260 (37.31%), Postives = 141/260 (54.23%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDES 780
            VEA TAFG++Y PG  PLP +ET A MYR A  +     +  ++ISNYA+P ++  HNR YWEN+P+  FG GAASYV G RF+RP    +Y QWV + + R ++      +D S  H G+                ++NN   L+A Q+ L E +MLGFRL +G++L  L  ++G + + ++        + GWV          +N  G+  +  +       G        LRL+DPEGFLFSN+V+S++F KL  S
Sbjct:  207 VEAVTAFGRYYQPGNPPLPTDETAAQMYRMAQQLISISGYEHYEISNYAKPDYQCGHNRVYWENLPYYGFGMGAASYVAGERFTRPPTRKEYYQWV-QSVDRQYK---LSLQDRSFKHQGID---------------TSNN--CLEANQECLLETLMLGFRLADGINLSTLSQRFGQQTVDQILIYLQPYQKLGWV--------ELINPKGIVTLFSNNQKFPVEGY-------LRLTDPEGFLFSNTVLSTLFSKLSNS 430          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A2G4F2W9_9CYAN (Heme chaperone HemW n=2 Tax=Tychonema TaxID=54312 RepID=A0A2G4F2W9_9CYAN)

HSP 1 Score: 157 bits (398), Expect = 6.980e-42
Identity = 97/259 (37.45%), Postives = 142/259 (54.83%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDE 777
            VE  TAFG+++  G+ PLP +ET A MYR A  +     +  ++ISNYARPG++ +HNR YWEN  +  FG GAASYV+G R +RPR   +Y QWV  +                S      DA+L           +   Q  L +  + L E +MLGFRL EGL L  L  K+G + ++K+ +      R+GWV  +VV+ +  +  G +  +   +D A  +   G     LRLSDPEGFLFSN++++++F KL++
Sbjct:  203 VEPVTAFGRYFQAGEQPLPADETAAQMYRLAREILTNSGYEHYEISNYARPGYQCRHNRVYWENRAYYGFGMGAASYVEGVRLTRPRKTQEYYQWVRSI----------------SPINSQPDADL-----------TIIKQDFLMSENEVLLETLMLGFRLAEGLSLSVLADKFGQKTVEKIWQCLQPYWRQGWV--EVVDANGTIPYG-IASLHAISDEAELLPLSG----NLRLSDPEGFLFSNTILATLFDKLED 427          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A3C0N230_9CYAN (Heme chaperone HemW n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0N230_9CYAN)

HSP 1 Score: 155 bits (392), Expect = 4.010e-41
Identity = 98/258 (37.98%), Postives = 132/258 (51.16%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDA-ELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKL 771
            VE  TAFG+ Y PG  PLP +ET A MYR A  +     +  ++ISNYA PG + +HNR YWEN P+  FG GAASYVDGRRF+R R   +Y  WV +LI  G                G+ D  ELS                      D L E++MLG RL EGL L  L+ ++G + ++++        R GWV  ++V TD  +              A Q   +     +LRLSDPEGFLFSN++++ +F +L
Sbjct:  212 VEPVTAFGRQYAPGAKPLPTDETAAQMYRVAQQVLTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVDGRRFTRGRTRREYYTWVQQLIDAG----------------GVMDCPELS--------------------ESDVLLENLMLGLRLAEGLSLSTLILQFGEKTLEQIWTSLQPYYRNGWV--EIVGTDGKVI-------------AVQNDQKLMMTGQLRLSDPEGFLFSNTILADLFSQL 418          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: UPI00177D00C7 (Coproporphyrinogen III oxidase n=1 Tax=Microcoleus sp. FACHB-SPT15 TaxID=2692830 RepID=UPI00177D00C7)

HSP 1 Score: 153 bits (387), Expect = 2.120e-40
Identity = 100/257 (38.91%), Postives = 128/257 (49.81%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKL 771
            +E  TAFG+ Y PG  PLP +ET A MYR A  +     +  ++ISNYA PG   +HNR YWEN P+  FG GAASYV G RF+RPR   +Y  WV +LI  G                G+ D+            P T+         D L E +MLG RL EGL LD L  ++G + +K++        RRGWV          LN  G  E    T      G       +LRLSDPEGFLFSN+V++ +F +L
Sbjct:  213 IEPVTAFGRQYAPGVKPLPTDETAAKMYRLAQHILTSAGYEHYEISNYALPGKACRHNRVYWENRPYYGFGMGAASYVQGYRFTRPRTRREYYAWVQQLIDAG----------------GVLDS------------PETS-------AADILLETLMLGLRLAEGLSLDKLRNQFGEKTLKEIWTSLQPHYRRGWV--------EVLNASG--EAVEDTQAVPTTG-------QLRLSDPEGFLFSNTVLADLFSQL 417          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: B4VWX2_9CYAN (Heme chaperone HemW n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VWX2_9CYAN)

HSP 1 Score: 153 bits (386), Expect = 2.490e-40
Identity = 94/259 (36.29%), Postives = 132/259 (50.97%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDE 777
            +E  TAFG+ Y+PG +PLP +ET A MYR A  +     +  ++ISNYA P  + +HNR YWEN PF  FG GAASY+  RRF+RPR   +Y  WV++ I  G                G+ D+ LSR                     D L E +MLG RL +GL L AL  K+G   I+++       + +GW+   +V  D ++       ID       Q  S      R+RLSDP GFLFSN++++ +F ++ E
Sbjct:  200 IEPVTAFGRQYSPGISPLPTDETTAQMYRLAQQLLTDAGYEHYEISNYALPTHQCRHNRVYWENRPFYGFGMGAASYIQARRFTRPRTRREYYAWVEQFIQAG----------------GVLDSPLSRTT-------------------DILLETVMLGLRLADGLSLSALREKFGETLIERIWRSLQPSVDKGWIT--IVTPDGSV-------IDM------QAVSNRPISGRIRLSDPNGFLFSNTILADIFKEIGE 408          
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A367QS50_9NOSO (Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A367QS50_9NOSO)

HSP 1 Score: 151 bits (381), Expect = 1.060e-39
Identity = 90/257 (35.02%), Postives = 129/257 (50.19%), Query Frame = 1
Query:    1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKL 771
            +E  TAFG++Y PG +PLP +ET   MY+    +     +  ++ISNYA+PG + +HNR YWEN P+  FG GAASYVDG+RF+RPR   +Y +WV +LI  G                G+ D E++                     ++ L E +MLG RL EGL+L  LV K+G + +K++ +       +GWV  ++VE                               RLRL DP+GFLFSN V++ +F  L
Sbjct:  207 IEPGTAFGRYYKPGDSPLPTDETTVKMYQMGQQVLTGAGYKHYEISNYAQPGHQCRHNRVYWENRPYYGFGMGAASYVDGKRFTRPRKTQEYYRWVQDLIANG----------------GVIDWEVT-------------------PPEEILLETLMLGLRLAEGLNLADLVEKFGEQKVKEIHKCLRSHFEKGWV--EIVEG------------------------------RLRLCDPDGFLFSNVVLAELFSHL 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC0_ECTSI3.960e-7445.51Radical S-adenosyl methionine domain-containing pr... [more]
A0A6H5K982_9PHAE8.570e-7444.92Radical SAM core domain-containing protein n=1 Tax... [more]
K9VZK7_9CYAN2.350e-4236.29Heme chaperone HemW n=1 Tax=Crinalium epipsammum P... [more]
K9WMG2_9CYAN3.990e-4239.15Heme chaperone HemW n=4 Tax=Oscillatoriales TaxID=... [more]
A0A6P0P2T1_9CYAN5.180e-4237.31Heme chaperone HemW n=14 Tax=Okeania TaxID=1458928... [more]
A0A2G4F2W9_9CYAN6.980e-4237.45Heme chaperone HemW n=2 Tax=Tychonema TaxID=54312 ... [more]
A0A3C0N230_9CYAN4.010e-4137.98Heme chaperone HemW n=1 Tax=Cyanobacteria bacteriu... [more]
UPI00177D00C72.120e-4038.91Coproporphyrinogen III oxidase n=1 Tax=Microcoleus... [more]
B4VWX2_9CYAN2.490e-4036.29Heme chaperone HemW n=1 Tax=Coleofasciculus chthon... [more]
A0A367QS50_9NOSO1.060e-3935.02Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141874contigH-elongata_contig141874:208..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue6.2e-63
Seed eggNOG ortholog2880.D7FRC0
EggNOG free text desc.coproporphyrinogen oxidase activity
EggNOG OGs2QRH0@2759,COG0635@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size792
Cds size792
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141874.2898.1prot_H-elongata_contig141874.2898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141874 208..1553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.956382-CDS-H-elongata_contig141874:207..3061622929842.956382-CDS-H-elongata_contig141874:207..306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141874 208..306 +
1691679179.8157237-CDS-H-elongata_contig141874:207..3061691679179.8157237-CDS-H-elongata_contig141874:207..306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141874 208..306 +
1622929842.9695354-CDS-H-elongata_contig141874:561..8651622929842.9695354-CDS-H-elongata_contig141874:561..865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141874 562..865 +
1691679179.8265114-CDS-H-elongata_contig141874:561..8651691679179.8265114-CDS-H-elongata_contig141874:561..865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141874 562..865 +
1622929842.981038-CDS-H-elongata_contig141874:1164..15531622929842.981038-CDS-H-elongata_contig141874:1164..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141874 1165..1553 +
1691679179.8360412-CDS-H-elongata_contig141874:1164..15531691679179.8360412-CDS-H-elongata_contig141874:1164..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141874 1165..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141874.2898.1

>prot_H-elongata_contig141874.2898.1 ID=prot_H-elongata_contig141874.2898.1|Name=mRNA_H-elongata_contig141874.2898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYAR
PGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELI
VRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQD
ALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDV
VETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVI
SSVFCKLDESQVR*
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mRNA from alignment at H-elongata_contig141874:208..1553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141874.2898.1 ID=mRNA_H-elongata_contig141874.2898.1|Name=mRNA_H-elongata_contig141874.2898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1346bp|location=Sequence derived from alignment at H-elongata_contig141874:208..1553+ (Himanthalia elongata Himel1 dioecious)
GTCGAAGCAAGAACGGCGTTTGGTAAATGGTATACGCCTGGGAAGACGCC TCTTCCCTATGAGGAAACCTGCGCGGACATGTATCGCAGAGCGAGCAGTG TGATCGGCGCGGCCGGCTACAACCATTACGAGGCGAGATCCCAGCGTCCA GCTTGATGTACAAAACGTAAGCTTCTGGACTGCTGTCTGTTGATGATGTA TTTATACCTTAAGGCAAAAACATACCCCACCGCTCCTTGGTGCGGGGGAC GCTCGTTTAAAGTAGAACTACATTTATATTTTAGCCTTGCCAACAGCCTG ACCCGAAGCGGTAAGGGCACAAACGTCGATCTTTTCATTTTTCTGGCTGG CTAGATGCCGTGCTTTATTTTATTTTATTTTTTTCAGATATCGAACTATG CTCGTCCGGGGTTTGAAAGCAAGCACAATCGCGCCTACTGGGAGAACGTT CCGTTCCTGGCTTTCGGAAACGGAGCAGCCAGCTACGTCGATGGCCGCCG TTTTTCGCGTCCACGCGGCCTGAGCGATTACGGTCAATGGGTGGATGAGC TCATCGTGAGAGGGTGGGAGGGTGCTACGGCATTTGCCGAGGACGCATCA TCGAATCATGCGGGGTTGAAGGATGCGGAGCTCTCTCGTGAAGCTGCAAA GCGGGCGAGTGCGGGAATGGGAGGTTGGAGCTGGGGGGGGGGTAAGAAAG TCGGGGAGCGATGTGAGCTTCCCCGTCAGATATACTTGTGTTCTTTTCTA CTTTAGTACGGCTGACAGAAAGGCTCTAACTAAGCTTGACATCGACGGTA TCCACCGGAAGCTTGCGCCTGGCACGCCTCGCATGAAGAAGGTCATAAAG GAAAGCCCGCCCCCTAAACGTTTCTGTTCATCGACCTTTACTCGATCGAA AACGCCAACCGAAAATTCTCAACCCATTCACCCCACGTCTCCAAAGCCCT CATTCAGTTAACCCGTCAACTAATAACCAACAACACTTGGACGCGCGGCA GGACGCCCTCTACGAGGATATAATGCTCGGCTTTCGCCTCAAGGAAGGCC TCGATCTCGATGCCTTGGTCGCGAAATACGGCAGCAGAGCGATAAAGAAG GTGGAGGAAGGTTCTACCGATGGCATACGTCGCGGCTGGGTATTGCGGGA CGTTGTCGAAACTGATAACGCCTTAAATACCGGTGGACTGGGGGAAATAG ACAGAAGCACCGACGGTGCGGGGCAAGTGGGGTCGAGGGGATGCCGGCGT CGAAGGCTTCGACTTTCCGATCCAGAAGGATTCCTGTTTTCAAACTCCGT GATATCTTCCGTGTTCTGTAAGCTTGACGAGTCACAAGTGAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig141874:208..1553+

>mRNA_H-elongata_contig141874.2898.1 ID=mRNA_H-elongata_contig141874.2898.1|Name=mRNA_H-elongata_contig141874.2898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig141874:208..1553+ (Himanthalia elongata Himel1 dioecious)
GTCGAAGCAAGAACGGCGTTTGGTAAATGGTATACGCCTGGGAAGACGCC
TCTTCCCTATGAGGAAACCTGCGCGGACATGTATCGCAGAGCGAGCAGTG
TCGAAGCAAGAACGGCGTTTGGTAAATGGTATACGCCTGGGAAGACGCCT
CTTCCCTATGAGGAAACCTGCGCGGACATGTATCGCAGAGCGAGCAGTAT
GCCGTGCTTTATTTTATTTTATTTTTTTCAGATATCGAACTATGCTCGTC
CGGGGTTTGAAAGCAAGCACAATCGCGCCTACTGGGAGAACGTTCCGTTC
CTGGCTTTCGGAAACGGAGCAGCCAGCTACGTCGATGGCCGCCGTTTTTC
GCGTCCACGCGGCCTGAGCGATTACGGTCAATGGGTGGATGAGCTCATCG
TGAGAGGGTGGGAGGGTGCTACGGCATTTGCCGAGGACGCATCATCGAAT
CATGCGGGGTTGAAGGATGCGGAGCTCTCTCGTGAAGCTGCAAAGCGGGC
GAATGCCGTGCTTTATTTTATTTTATTTTTTTCAGATATCGAACTATGCT
CGTCCGGGGTTTGAAAGCAAGCACAATCGCGCCTACTGGGAGAACGTTCC
GTTCCTGGCTTTCGGAAACGGAGCAGCCAGCTACGTCGATGGCCGCCGTT
TTTCGCGTCCACGCGGCCTGAGCGATTACGGTCAATGGGTGGATGAGCTC
ATCGTGAGAGGGTGGGAGGGTGCTACGGCATTTGCCGAGGACGCATCATC
GAATCATGCGGGGTTGAAGGATGCGGAGCTCTCTCGTGAAGCTGCAAAGC
GGGCGATTAACCCGTCAACTAATAACCAACAACACTTGGACGCGCGGCAG
GACGCCCTCTACGAGGATATAATGCTCGGCTTTCGCCTCAAGGAAGGCCT
CGATCTCGATGCCTTGGTCGCGAAATACGGCAGCAGAGCGATAAAGAAGG
TGGAGGAAGGTTCTACCGATGGCATACGTCGCGGCTGGGTATTGCGGGAC
GTTGTCGAAACTGATAACGCCTTAAATACCGGTGGACTGGGGGAAATAGA
CAGAAGCACCGACGGTGCGGGGCAAGTGGGGTCGAGGGGATGCCGGCGTC
GAAGGCTTCGACTTTCCGATCCAGAAGGATTCCTGTTTTCAAACTCCGTG
ATATCTTCCGTGTTCTGTAAGCTTGACGAGTCACAAGTGAGATAGTTAAC
CCGTCAACTAATAACCAACAACACTTGGACGCGCGGCAGGACGCCCTCTA
CGAGGATATAATGCTCGGCTTTCGCCTCAAGGAAGGCCTCGATCTCGATG
CCTTGGTCGCGAAATACGGCAGCAGAGCGATAAAGAAGGTGGAGGAAGGT
TCTACCGATGGCATACGTCGCGGCTGGGTATTGCGGGACGTTGTCGAAAC
TGATAACGCCTTAAATACCGGTGGACTGGGGGAAATAGACAGAAGCACCG
ACGGTGCGGGGCAAGTGGGGTCGAGGGGATGCCGGCGTCGAAGGCTTCGA
CTTTCCGATCCAGAAGGATTCCTGTTTTCAAACTCCGTGATATCTTCCGT
GTTCTGTAAGCTTGACGAGTCACAAGTGAGATAG
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