mRNA_H-elongata_contig141821.2893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141821.2893.1
Unique NamemRNA_H-elongata_contig141821.2893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141821.2893.1 vs. uniprot
Match: A0A7X3RZ23_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3RZ23_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.860e-5
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 3 
Query:  201 DRAALGIVFDTTSGVDESDDGERAVTWINHRDWKTDKPLGSWFGVRTSADGRVEALALRGNRCTG 395
            DR  L I++  T+G DE         W N+ +W +D+PL +W+GVRT++DG V  L L  N   G
Sbjct:  385 DREVLTILYQATNG-DE---------WTNNENWLSDRPLNTWYGVRTNSDGEVVRLELSRNNLQG 439
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BLAST of mRNA_H-elongata_contig141821.2893.1 vs. uniprot
Match: A0A6L7MKX6_9CHLR (Uncharacterized protein n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7MKX6_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 7.970e-5
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = 3 
Query:  201 DRAALGIVFDTTSGVDESDDGERAVTWINHRDWKTDKPLGSWFGVRTSADGRVEALALRGNRCTG 395
            DRA L  +++ T G D          W +  +W +DKP+ +W GV T ADGRV  L L GN   G
Sbjct:  270 DRAVLVALYEETEGTD----------WYDATNWLSDKPMRTWSGVTTDADGRVTGLYLSGNLLNG 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141821.2893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X3RZ23_9BACT7.860e-540.00Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6L7MKX6_9CHLR7.970e-540.00Uncharacterized protein n=2 Tax=Dehalococcoidia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141821contigH-elongata_contig141821:588..1177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141821.2893.1prot_H-elongata_contig141821.2893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141821 588..1016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.4772668-CDS-H-elongata_contig141821:587..7931622929842.4772668-CDS-H-elongata_contig141821:587..793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141821 588..793 -
1691679179.6060002-CDS-H-elongata_contig141821:587..7931691679179.6060002-CDS-H-elongata_contig141821:587..793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141821 588..793 -
1622929842.497251-CDS-H-elongata_contig141821:988..10161622929842.497251-CDS-H-elongata_contig141821:988..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141821 989..1016 -
1691679179.613795-CDS-H-elongata_contig141821:988..10161691679179.613795-CDS-H-elongata_contig141821:988..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141821 989..1016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.5117474-UTR-H-elongata_contig141821:1016..11771622929842.5117474-UTR-H-elongata_contig141821:1016..1177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141821 1017..1177 -
1691679179.6217237-UTR-H-elongata_contig141821:1016..11771691679179.6217237-UTR-H-elongata_contig141821:1016..1177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141821 1017..1177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141821.2893.1

>prot_H-elongata_contig141821.2893.1 ID=prot_H-elongata_contig141821.2893.1|Name=mRNA_H-elongata_contig141821.2893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MVQAIMAENGFLHDRAALGIVFDTTSGVDESDDGERAVTWINHRDWKTDK
PLGSWFGVRTSADGRVEALALRGNRCTG
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mRNA from alignment at H-elongata_contig141821:588..1177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141821.2893.1 ID=mRNA_H-elongata_contig141821.2893.1|Name=mRNA_H-elongata_contig141821.2893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig141821:588..1177- (Himanthalia elongata Himel1 dioecious)
ACGTATCATGCCGGTTTGGGCGGTTTAATGAAAATTGATTAAAAAGGGAA
CAGCCTGAGGGCCACCACTTCCTGCTTCACCGCGCGTGGACCATTGATCA
TACCCCGATCACCGCTAATGGTAGAGTGGCCACAGTTTGGTGTGGCAAAG
TGCTCGACTCAATGGTGCAGGCGATAATGGCAGAAAATGGTGAGACGCCC
TCCAAAAAATATAATCTGACTCCGTTTTGGACTTTGTTAAACGAGGAGAG
AGATCTCACAGCACCGATGGACTAGGTGTAGCATGTCCCTAGATGAGTTT
GCTCGTGAAGCATTAGGCGCGGAAGGTGCATAGTATATACTGACACCGTC
ACGCTATATGTGTTTTTGTCCCTCGCCCTCGCAGGGTTCCTCCACGACCG
TGCCGCGCTCGGAATTGTTTTCGACACGACTTCGGGAGTTGACGAATCAG
ATGACGGAGAGAGAGCGGTGACCTGGATAAATCATAGGGACTGGAAAACG
GACAAACCTCTTGGAAGCTGGTTTGGTGTTAGAACGAGTGCGGATGGTCG
TGTGGAGGCTCTTGCGTTACGGGGAAATCGTTGTACAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig141821:588..1177-

>mRNA_H-elongata_contig141821.2893.1 ID=mRNA_H-elongata_contig141821.2893.1|Name=mRNA_H-elongata_contig141821.2893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig141821:588..1177- (Himanthalia elongata Himel1 dioecious)
ATGGTGCAGGCGATAATGGCAGAAAATGATGGTGCAGGCGATAATGGCAG
AAAATGGGTTCCTCCACGACCGTGCCGCGCTCGGAATTGTTTTCGACACG
ACTTCGGGAGTTGACGAATCAGATGACGGAGAGAGAGCGGTGACCTGGAT
AAATCATAGGGACTGGAAAACGGACAAACCTCTTGGAAGCTGGTTTGGTG
TTAGAACGAGTGCGGATGGTCGTGTGGAGGCTCTTGCGTTACGGGGAAAT
CGTTGTACAGGTGGTTCCTCCACGACCGTGCCGCGCTCGGAATTGTTTTC
GACACGACTTCGGGAGTTGACGAATCAGATGACGGAGAGAGAGCGGTGAC
CTGGATAAATCATAGGGACTGGAAAACGGACAAACCTCTTGGAAGCTGGT
TTGGTGTTAGAACGAGTGCGGATGGTCGTGTGGAGGCTCTTGCGTTACGG
GGAAATCGTTGTACAGGT
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