mRNA_H-elongata_contig103485.289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103485.289.1
Unique NamemRNA_H-elongata_contig103485.289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103485.289.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.830e-27
Identity = 50/114 (43.86%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:    1 PVEWNIQDEICDHFALHCTQSMVLLNEEDV-DKADALECAAVADVLVVSEGGFSVASSFLSPHVKILTDKWAPDEMEMKISLDPASTVAGISQSEHKLIQKTLWEYSECSALAS 339
            P+ W++  E CD   LHC+Q +VLLNE    + + +LEC A +D+ + SE  FS A + LS HVK+LTD+W  DE EM ++L+PA+T+AG+  S+ +L++  + +Y ECSA ++
Sbjct:  160 PLYWDVAGETCDDLGLHCSQHVVLLNERTAPESSQSLECIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSASSA 273
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BLAST of mRNA_H-elongata_contig103485.289.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.150e-26
Identity = 49/114 (42.98%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:    1 PVEWNIQDEICDHFALHCTQSMVLLNEEDV-DKADALECAAVADVLVVSEGGFSVASSFLSPHVKILTDKWAPDEMEMKISLDPASTVAGISQSEHKLIQKTLWEYSECSALAS 339
            P+ W++  E CD   LHCTQ +VLLNE    + + +L+C A +D+ + SE  FS A + LS HVK+LTD+W  DE EM ++L+PA+T+AG+  S+ +L++  + +Y ECS+ ++
Sbjct:  265 PLYWDVAGETCDDLGLHCTQHVVLLNERTAPESSQSLDCIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSSSST 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103485.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHD0_ECTSI1.830e-2743.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Y9_9PHAE2.150e-2642.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103485contigH-elongata_contig103485:762..2027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size353
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103485.289.1prot_H-elongata_contig103485.289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103485 762..2027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.8748271-CDS-H-elongata_contig103485:761..9181622929569.8748271-CDS-H-elongata_contig103485:761..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103485 762..918 -
1691679074.6229424-CDS-H-elongata_contig103485:761..9181691679074.6229424-CDS-H-elongata_contig103485:761..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103485 762..918 -
1622929569.8907094-CDS-H-elongata_contig103485:1454..15881622929569.8907094-CDS-H-elongata_contig103485:1454..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103485 1455..1588 -
1691679074.6303859-CDS-H-elongata_contig103485:1454..15881691679074.6303859-CDS-H-elongata_contig103485:1454..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103485 1455..1588 -
1622929569.9019966-CDS-H-elongata_contig103485:1967..20271622929569.9019966-CDS-H-elongata_contig103485:1967..2027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103485 1968..2027 -
1691679074.6380637-CDS-H-elongata_contig103485:1967..20271691679074.6380637-CDS-H-elongata_contig103485:1967..2027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103485 1968..2027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103485.289.1

>prot_H-elongata_contig103485.289.1 ID=prot_H-elongata_contig103485.289.1|Name=mRNA_H-elongata_contig103485.289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
PVEWNIQDEICDHFALHCTQSMVLLNEEDVDKADALECAAVADVLVVSEG
GFSVASSFLSPHVKILTDKWAPDEMEMKISLDPASTVAGISQSEHKLIQK
TLWEYSECSALASRRP*
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mRNA from alignment at H-elongata_contig103485:762..2027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103485.289.1 ID=mRNA_H-elongata_contig103485.289.1|Name=mRNA_H-elongata_contig103485.289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-elongata_contig103485:762..2027- (Himanthalia elongata Himel1 dioecious)
CCTGTCGAATGGAACATTCAGGACGAGATCTGCGACCATTTTGCGCTTCA
CTGCACTCAGGTGACCAGCCAACACTAAAAACGAATTATTTTCACAGTCA
CGCTTTTTTCTTAAATATATAGTTACTTCTTATATGCTCATTCCTACAGT
TTGTTCTTTTTTTACTTGTACTAAAAGTACTAAGTAAGGTAAAAATTATT
GAGATGGGAACAATAGGCTGGCTCACATGCAATATTGATACTTACAAAGC
GGCTATATTTTCTCTAATATTGAGCAATAGGGCACACAGTGTGGTACAAA
CTTGGGGACGTTGTCGACAGAGCAGCAATCACTTGAGCTAACTAACATCG
ATCAACAATCCTCTTTTATTTCGAATAACCCGTTGTTACACCCACTCGAC
GTCAACACCGGTGATCGGTCACGGCAACAACAACAACAGTCGATGGTGCT
CCTAAACGAGGAGGATGTCGACAAGGCTGATGCTCTCGAGTGCGCGGCAG
TGGCGGATGTGTTGGTGGTTAGCGAGGGCGGCTTTTCGGTGGCGTCCAGC
TTCCTGTCGCCTCATGTCAAGATGAGAAACTTATAATGAGAGAATCATTG
CTACTGTTGTATTTTTGTGTTTTTATTTTTAAAACTTTGAACTCATTCCA
ACCCTCCGAAAAATCACACCTTCTTAGCCGATGAGATAATCCTGTTGGAA
CAGAATTTCAAGTTTTATATTGAATTTAGTGTAGAAAAAACATATCGAGT
TCCATAGTCATGGTTATAGCTAGTAATAACAACGTACTAGTTATAGTAAG
ATTACTTTATTTCGTAGTTACTACCGGTACTGTACTAATAATAGTAATGA
TAATTAATTTGGTACATGAGCATGCAAATGGGGCTTCGGGGGGTTAGTAT
ACGGAGCCTTGTCAGCGTTTATATTTTTATTTATGGCTTATTAGTATGTA
CACATTCGAACCTGACGATGGTTGGTCCCCTGGATTGCACGCGCTAAGAA
GGTGTGGATATTCGGGAAGTTGGGATGAATTCAAGTGGTTTTTAATAATA
ATAACCACACATGTTTATTTATCTTATCCCCGGTGCCCATGACCCTCTCA
AACCCAGATCCTGACGGACAAGTGGGCTCCTGACGAGATGGAGATGAAGA
TCTCGCTCGACCCGGCCTCCACGGTCGCCGGAATATCGCAGTCCGAGCAC
AAATTGATCCAGAAGACTCTCTGGGAGTACAGCGAGTGCTCCGCTCTGGC
TTCTCGGAGGCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig103485:762..2027-

>mRNA_H-elongata_contig103485.289.1 ID=mRNA_H-elongata_contig103485.289.1|Name=mRNA_H-elongata_contig103485.289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig103485:762..2027- (Himanthalia elongata Himel1 dioecious)
CCTGTCGAATGGAACATTCAGGACGAGATCTGCGACCATTTTGCGCTTCA
CTGCACTCAGCCTGTCGAATGGAACATTCAGGACGAGATCTGCGACCATT
TTGCGCTTCACTGCACTCAGTCGATGGTGCTCCTAAACGAGGAGGATGTC
GACAAGGCTGATGCTCTCGAGTGCGCGGCAGTGGCGGATGTGTTGGTGGT
TAGCGAGGGCGGCTTTTCGGTGGCGTCCAGCTTCCTGTCGCCTCATGTCA
AGATTCGATGGTGCTCCTAAACGAGGAGGATGTCGACAAGGCTGATGCTC
TCGAGTGCGCGGCAGTGGCGGATGTGTTGGTGGTTAGCGAGGGCGGCTTT
TCGGTGGCGTCCAGCTTCCTGTCGCCTCATGTCAAGATCCTGACGGACAA
GTGGGCTCCTGACGAGATGGAGATGAAGATCTCGCTCGACCCGGCCTCCA
CGGTCGCCGGAATATCGCAGTCCGAGCACAAATTGATCCAGAAGACTCTC
TGGGAGTACAGCGAGTGCTCCGCTCTGGCTTCTCGGAGGCCTTGACCTGA
CGGACAAGTGGGCTCCTGACGAGATGGAGATGAAGATCTCGCTCGACCCG
GCCTCCACGGTCGCCGGAATATCGCAGTCCGAGCACAAATTGATCCAGAA
GACTCTCTGGGAGTACAGCGAGTGCTCCGCTCTGGCTTCTCGGAGGCCTT
GA
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