mRNA_H-elongata_contig141780.2890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141780.2890.1
Unique NamemRNA_H-elongata_contig141780.2890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A6H5KN62_9PHAE (Glycine cleavage system P protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN62_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.980e-44
Identity = 81/89 (91.01%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GAVAAAP+GSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKL+GHYN++YRGR+GLSAHEFI+DLRPFK T GIVEEDVAKRLQ
Sbjct:  439 GAVAAAPFGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLDGHYNIVYRGRDGLSAHEFILDLRPFKHT-GIVEEDVAKRLQ 526
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BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: D7FRW0_ECTSI (Glycine cleavage system P protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW0_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.510e-43
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GA+AAAP+GSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKL GHYNV+YRGR+GLSAHEFI+DLRPFK T GIVEEDVAKRLQ
Sbjct:  785 GAIAAAPFGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLAGHYNVVYRGRDGLSAHEFILDLRPFKHT-GIVEEDVAKRLQ 872
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BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A835ZE30_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE30_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.900e-40
Identity = 75/89 (84.27%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GAV+AAP+GSAAILPISWMYIKMLGEPGL+K+T+ AILNANYMAA+LEG Y++LYRGR GLSAHEFIVDLRPFK  AG+VEEDVAKRLQ
Sbjct:  783 GAVSAAPFGSAAILPISWMYIKMLGEPGLRKATEYAILNANYMAARLEGAYDILYRGRSGLSAHEFIVDLRPFKE-AGVVEEDVAKRLQ 870
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BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A835ZCN8_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN8_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.170e-39
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GAV+AAP+GSAAILPISWMYIKMLGEPGL+K+T+ AILNANYMAA+L+G +N+LYRGR GLSAHEFIVDLRPFK   GIVEEDVAKRLQ
Sbjct:  794 GAVSAAPFGSAAILPISWMYIKMLGEPGLRKATEYAILNANYMAARLDGKFNILYRGRSGLSAHEFIVDLRPFKDF-GIVEEDVAKRLQ 881
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BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A7R9WUH1_9STRA (Glycine dehydrogenase (aminomethyl-transferring) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WUH1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.110e-35
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GAVA AP+GSAAILPISWMYIKMLGEPGLK +T  AILNANYMAA+L G Y+VL+ G  G  AHEFI+DLRP K + G+ EEDVAKRLQ
Sbjct:  100 GAVAGAPFGSAAILPISWMYIKMLGEPGLKWATGQAILNANYMAARLNGAYDVLFVGTNGQCAHEFILDLRPLKASTGVTEEDVAKRLQ 188
[Close]
BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A7S2C4K9_9STRA (Glycine cleavage system P protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4K9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 6.580e-35
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GA+AAAP+GSAAILPISWMYIKMLGE GL KSTQ+AILNANYM+ +LE H+ +L+RG+ G+ AHEFI+DLRPFK   GIVEED+AKRLQ
Sbjct:  780 GAIAAAPFGSAAILPISWMYIKMLGEAGLTKSTQVAILNANYMSKRLEEHFPILFRGKTGMCAHEFIMDLRPFKEH-GIVEEDIAKRLQ 867
[Close]
BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A3B4VQV0_SERDU (Glycine dehydrogenase (decarboxylating), mitochondrial-like n=4 Tax=Seriola TaxID=8160 RepID=A0A3B4VQV0_SERDU)

HSP 1 Score: 128 bits (321), Expect = 1.300e-34
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            G ++AAP+GS+AILPISW YIKM+G  GL  +T++AILNANYMA +LEGHY VLYRGR+G  AHEFI+D+RPFK TA I   DVAKRLQ
Sbjct:   56 GTISAAPWGSSAILPISWAYIKMMGAKGLLHATEVAILNANYMAKRLEGHYKVLYRGRKGFVAHEFILDVRPFKKTANIEAVDVAKRLQ 144
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BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A7S3HWW2_9SPIT (Glycine dehydrogenase (aminomethyl-transferring) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HWW2_9SPIT)

HSP 1 Score: 128 bits (322), Expect = 3.410e-34
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRL 264
            G VAAAP+GSA+ILPISWMY  M+G  GLKK+TQ+AILNANYMAA+L GHY VL+ G+ G+ AHEFI+DLR FK +AGI E DVAKRL
Sbjct:  118 GPVAAAPWGSASILPISWMYCAMMGAAGLKKATQVAILNANYMAARLSGHYKVLFTGKTGMCAHEFILDLREFKASAGISEADVAKRL 205
[Close]
BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A7S2NSV3_9STRA (Glycine cleavage system P protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSV3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.210e-34
Identity = 66/89 (74.16%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GAV+AAP+GSAAILPISWMYIKM G  GLKK+T+ AILNANYMAA+L+G Y+VL+RG  G  AHEFI+DLRP K   GI EEDVAKRLQ
Sbjct:  665 GAVSAAPFGSAAILPISWMYIKMNGHEGLKKATEHAILNANYMAARLDGAYDVLFRGTNGQCAHEFIIDLRPLKAATGITEEDVAKRLQ 753
[Close]
BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Match: A0A7S1ESX9_9RHOD (Glycine cleavage system P protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESX9_9RHOD)

HSP 1 Score: 131 bits (329), Expect = 4.320e-34
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGHYNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ 267
            GAV+AAPYGSA+ILPISWMYIKM+G  GLK +T+ AILNANYMA +LE  Y VLYRG+ G SAHEFI+D+RP K  +GI E DVAKRLQ
Sbjct:  294 GAVSAAPYGSASILPISWMYIKMMGSDGLKNATEYAILNANYMAKRLENAYPVLYRGKNGRSAHEFIIDIRPMKAASGISESDVAKRLQ 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141780.2890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN62_9PHAE1.980e-4491.01Glycine cleavage system P protein n=1 Tax=Ectocarp... [more]
D7FRW0_ECTSI1.510e-4391.01Glycine cleavage system P protein n=1 Tax=Ectocarp... [more]
A0A835ZE30_9STRA4.900e-4084.27Glycine cleavage system P protein n=1 Tax=Tribonem... [more]
A0A835ZCN8_9STRA3.170e-3983.15Glycine cleavage system P protein n=1 Tax=Tribonem... [more]
A0A7R9WUH1_9STRA2.110e-3574.16Glycine dehydrogenase (aminomethyl-transferring) n... [more]
A0A7S2C4K9_9STRA6.580e-3575.28Glycine cleavage system P protein n=1 Tax=Dictyoch... [more]
A0A3B4VQV0_SERDU1.300e-3469.66Glycine dehydrogenase (decarboxylating), mitochond... [more]
A0A7S3HWW2_9SPIT3.410e-3471.59Glycine dehydrogenase (aminomethyl-transferring) n... [more]
A0A7S2NSV3_9STRA4.210e-3474.16Glycine cleavage system P protein n=2 Tax=Leptocyl... [more]
A0A7S1ESX9_9RHOD4.320e-3471.91Glycine cleavage system P protein n=1 Tax=Timspurc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141780contigH-elongata_contig141780:853..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.6e-37
Seed eggNOG ortholog2880.D7FRW0
Preferred nameGLDC
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
GOsGO:0001101,GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0005960,GO:0006082,GO:0006091,GO:0006520,GO:0006544,GO:0006546,GO:0006730,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014075,GO:0016020,GO:0016054,GO:0016491,GO:0016594,GO:0016597,GO:0016638,GO:0016639,GO:0016642,GO:0017144,GO:0019464,GO:0019752,GO:0019842,GO:0019899,GO:0022900,GO:0030170,GO:0031406,GO:0031974,GO:0032991,GO:0033993,GO:0034097,GO:0036094,GO:0036255,GO:0042133,GO:0042135,GO:0042165,GO:0042221,GO:0042737,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046983,GO:0047960,GO:0048037,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070013,GO:0070279,GO:0070280,GO:0070542,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1902494,GO:1903442,GO:1990204,GO:1990823,GO:1990830
EggNOG free text desc.glycine dehydrogenase (decarboxylating) activity
EggNOG OGsCOG1003@1,KOG2040@2759
EC1.4.4.2
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s12_g3759_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.2953715-CDS-H-elongata_contig141780:852..9541622929842.2953715-CDS-H-elongata_contig141780:852..954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141780 853..954 +
1691679179.5387628-CDS-H-elongata_contig141780:852..9541691679179.5387628-CDS-H-elongata_contig141780:852..954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141780 853..954 +
1622929842.3111138-CDS-H-elongata_contig141780:1440..16051622929842.3111138-CDS-H-elongata_contig141780:1440..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141780 1441..1605 +
1691679179.552331-CDS-H-elongata_contig141780:1440..16051691679179.552331-CDS-H-elongata_contig141780:1440..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141780 1441..1605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141780.2890.1prot_H-elongata_contig141780.2890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141780 853..1605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141780.2890.1

>prot_H-elongata_contig141780.2890.1 ID=prot_H-elongata_contig141780.2890.1|Name=mRNA_H-elongata_contig141780.2890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GAVAAAPYGSAAILPISWMYIKMLGEPGLKKSTQLAILNANYMAAKLEGH
YNVLYRGREGLSAHEFIVDLRPFKPTAGIVEEDVAKRLQ
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mRNA from alignment at H-elongata_contig141780:853..1605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141780.2890.1 ID=mRNA_H-elongata_contig141780.2890.1|Name=mRNA_H-elongata_contig141780.2890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig141780:853..1605+ (Himanthalia elongata Himel1 dioecious)
GGCGCCGTCGCCGCCGCGCCGTATGGCAGTGCCGCCATCCTCCCGATCTC
GTGGATGTACATCAAGATGCTCGGGGAGCCAGGCCTCAAGAAGTCTACCC
AGGTGAGTGCCGAGAGCGAACGGGTAGGGTGGGGACGGGGGGTGAAGGGA
AGGGAAAATGCCGCCTTCCTTTTTTGTTTTGTTCTTGTTGGTGGTGTGTT
TCACCTCATACTTACGGTTCGTATTCTCATTTCTTTTCCCATGTGGGCAT
GTAGGTAATATTAATAGTAAAATAAATAAATAAATAAATAAAAATTAATT
ACGTTCCTAATTTTTGTCGAAATGAGAAAACGAAAATCCCCGGAGCGCTT
TCCTATCTATGTTTCCACACTTTTGGTTATATCATGATGTATTACGATGT
ATAACGATGAATCGCCGCCCAAGCTTTCACTCGTCCTCGAGGGCAAGAAT
TGAATTTCTGGAGCCCTCCGCCCCCCCCCGTCGCATCGCATGCTCTTGAA
CCTCTCTTGTTTGTTGTTGCTTATTTTAAGTTGTTTTTCTTTTTTTCCTC
CTTTTGCACGGCTGTCGACATTTCTTAACGCCTTACAGTTAGCTATTCTT
AACGCCAACTACATGGCGGCCAAGCTGGAGGGGCACTACAACGTACTCTA
CAGGGGGCGCGAGGGTCTGAGCGCGCACGAGTTCATCGTGGACCTCCGCC
CCTTCAAACCCACGGCGGGTATCGTCGAGGAGGACGTCGCCAAGCGCCTC
CAG
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Coding sequence (CDS) from alignment at H-elongata_contig141780:853..1605+

>mRNA_H-elongata_contig141780.2890.1 ID=mRNA_H-elongata_contig141780.2890.1|Name=mRNA_H-elongata_contig141780.2890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig141780:853..1605+ (Himanthalia elongata Himel1 dioecious)
GGCGCCGTCGCCGCCGCGCCGTATGGCAGTGCCGCCATCCTCCCGATCTC
GTGGATGTACATCAAGATGCTCGGGGAGCCAGGCCTCAAGAAGTCTACCC
AGGGCGCCGTCGCCGCCGCGCCGTATGGCAGTGCCGCCATCCTCCCGATC
TCGTGGATGTACATCAAGATGCTCGGGGAGCCAGGCCTCAAGAAGTCTAC
CCAGTTAGCTATTCTTAACGCCAACTACATGGCGGCCAAGCTGGAGGGGC
ACTACAACGTACTCTACAGGGGGCGCGAGGGTCTGAGCGCGCACGAGTTC
ATCGTGGACCTCCGCCCCTTCAAACCCACGGCGGGTATCGTCGAGGAGGA
CGTCGCCAAGCGCCTCCAGTTAGCTATTCTTAACGCCAACTACATGGCGG
CCAAGCTGGAGGGGCACTACAACGTACTCTACAGGGGGCGCGAGGGTCTG
AGCGCGCACGAGTTCATCGTGGACCTCCGCCCCTTCAAACCCACGGCGGG
TATCGTCGAGGAGGACGTCGCCAAGCGCCTCCAG
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