mRNA_H-elongata_contig141681.2886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141681.2886.1
Unique NamemRNA_H-elongata_contig141681.2886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141681.2886.1 vs. uniprot
Match: D8LFT1_ECTSI (Cation efflux family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.820e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   28 DRTSSRLAIFGLLNLSYVVLQLTGAMAFGSLALLSDGFHNLSDV 159
            D+ S RLAIFGLLNL YVVLQL GAMAFGSLAL+SDGFHNLSDV
Sbjct:   75 DKMSGRLAIFGLLNLGYVVLQLAGAMAFGSLALMSDGFHNLSDV 118
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BLAST of mRNA_H-elongata_contig141681.2886.1 vs. uniprot
Match: F4PLY9_CAVFA (Putative zinc transporter n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLY9_CAVFA)

HSP 1 Score: 48.1 bits (113), Expect = 5.870e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   28 DRTSSRLAIFGLLNLSYVVLQLTGAMAFGSLALLSDGFHNLSDV 159
            D+ +  L I G+L + YV+ +L  A+  GSLALLSDGFHNL+D 
Sbjct:  456 DKKTLSLLIIGVLTVLYVIAELGSALYTGSLALLSDGFHNLTDA 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141681.2886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFT1_ECTSI3.820e-1586.36Cation efflux family protein n=1 Tax=Ectocarpus si... [more]
F4PLY9_CAVFA5.870e-552.27Putative zinc transporter n=1 Tax=Cavenderia fasci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141681contigH-elongata_contig141681:918..1079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.6e-12
Seed eggNOG ortholog2880.D8LFT1
Preferred nameZRC1
KEGG koko:K14688,ko:K14692
KEGG TC2.A.4.2,2.A.4.4.3,2.A.4.4.5
KEGG Pathwayko04978,map04978
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006873,GO:0006875,GO:0006877,GO:0006882,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009966,GO:0009967,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010646,GO:0010647,GO:0012505,GO:0015075,GO:0015087,GO:0015318,GO:0016020,GO:0016021,GO:0016323,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022857,GO:0022890,GO:0023051,GO:0023056,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0032879,GO:0034220,GO:0040026,GO:0040028,GO:0042175,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046578,GO:0046579,GO:0046686,GO:0046873,GO:0046915,GO:0046916,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051056,GO:0051057,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051716,GO:0055065,GO:0055068,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061062,GO:0061063,GO:0061088,GO:0061687,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071294,GO:0071577,GO:0071585,GO:0071944,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097237,GO:0097501,GO:0098588,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098805,GO:0098827,GO:0098849,GO:0098852,GO:1902531,GO:1902533,GO:1990170,GO:1990748,GO:2000026
EggNOG free text desc.regulation of zinc ion transport
EggNOG OGsCOG1230@1,KOG1483@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.1154892-CDS-H-elongata_contig141681:917..10791622929842.1154892-CDS-H-elongata_contig141681:917..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141681 918..1079 +
1691679179.492285-CDS-H-elongata_contig141681:917..10791691679179.492285-CDS-H-elongata_contig141681:917..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141681 918..1079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141681.2886.1prot_H-elongata_contig141681.2886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141681 918..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141681.2886.1

>prot_H-elongata_contig141681.2886.1 ID=prot_H-elongata_contig141681.2886.1|Name=mRNA_H-elongata_contig141681.2886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
GVIDTAVVIDRTSSRLAIFGLLNLSYVVLQLTGAMAFGSLALLSDGFHNL
SDV*
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mRNA from alignment at H-elongata_contig141681:918..1079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141681.2886.1 ID=mRNA_H-elongata_contig141681.2886.1|Name=mRNA_H-elongata_contig141681.2886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig141681:918..1079+ (Himanthalia elongata Himel1 dioecious)
GGGGTGATTGACACCGCTGTTGTAATAGACAGGACCTCTTCGCGCTTGGC
GATCTTCGGCCTCTTGAATCTTTCCTATGTCGTTCTTCAGCTCACTGGGG
CCATGGCGTTTGGGTCGCTCGCTCTTCTGTCCGACGGCTTCCACAACCTT
TCGGACGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig141681:918..1079+

>mRNA_H-elongata_contig141681.2886.1 ID=mRNA_H-elongata_contig141681.2886.1|Name=mRNA_H-elongata_contig141681.2886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig141681:918..1079+ (Himanthalia elongata Himel1 dioecious)
GGGGTGATTGACACCGCTGTTGTAATAGACAGGACCTCTTCGCGCTTGGC
GATCTTCGGCCTCTTGAATCTTTCCTATGTCGTTCTTCAGCTCACTGGGG
CCATGGCGTTTGGGTCGCTCGCTCTTCTGTCCGACGGCTTCCACAACCTT
TCGGACGTGTGAGGGGTGATTGACACCGCTGTTGTAATAGACAGGACCTC
TTCGCGCTTGGCGATCTTCGGCCTCTTGAATCTTTCCTATGTCGTTCTTC
AGCTCACTGGGGCCATGGCGTTTGGGTCGCTCGCTCTTCTGTCCGACGGC
TTCCACAACCTTTCGGACGTGTGA
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