mRNA_H-elongata_contig141455.2879.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: D7FQI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI2_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 7.240e-22 Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query: 1 VSVANPDRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMAGRRV 183
+++ +PDRF+CP E +RFSLPD R+ + E+DFK G GFIYYQHLRKAGGTGFCEMAGR +
Sbjct: 90 IAMDSPDRFRCPASEADRFSLPDIRDHVREKDFKSGEGFIYYQHLRKAGGTGFCEMAGRNM 150
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: D7G8S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S3_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 5.160e-21 Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 1 VSVANPDRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMAGRRV 183
++V +PDRFQCP E +RFSLPD R+ E+ FK G GFIYYQHLRKAGGTGFCEMAGR +
Sbjct: 94 IAVDSPDRFQCPAIEADRFSLPDIRDHHQEKYFKSGEGFIYYQHLRKAGGTGFCEMAGRNM 154
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: A0A6H5KG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG32_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.440e-19 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 25 FQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMAGRR 180
FQCP E +RFSLPD R+ E+DFK G GFIYYQHLRKAGGTGFCEMAGRR
Sbjct: 80 FQCPATEADRFSLPDIRDHEREKDFKSGEGFIYYQHLRKAGGTGFCEMAGRR 131
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: A0A6H5L1N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N0_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.140e-18 Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 1 VSVANPDRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMAGRRV 183
V+V +PD+F+CP RE +RFS PD R+ E FK GRGFIYYQHLRKAGGT FC+MA R+V
Sbjct: 607 VAVDSPDKFECPDREADRFSSPDIRDHDDEEAFKAGRGFIYYQHLRKAGGTAFCDMASRQV 667
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 3.980e-18 Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 1 VSVANPDRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMAGRRV 183
V+V +PD+F+CP RE +RFSLPD R+ E FK G+GF+YYQHLRKAGGT FC+MA R +
Sbjct: 539 VAVDSPDKFECPDREADRFSLPDIRDHDNEEAFKAGQGFLYYQHLRKAGGTAFCDMASRNM 599
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: W7TRT1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRT1_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.350e-11 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 1 VSVANPDRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMAGRRV 183
V+V P F CP ER + PD R V F+ G GF+++QHLRKAGGTGFC+MA R +
Sbjct: 279 VNVGGPTNFTCPP-PSERLTQPDLRRIEVATQFRGGHGFVFFQHLRKAGGTGFCDMASRNM 338
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: A0A7S1YI37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YI37_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.100e-10 Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 19 DRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEMA 171
D F CP + R SLPD R+++ ++F+ G+GF+Y+QHLRKAGGT FC +A
Sbjct: 26 DIFPCPR--DARISLPDRRDKVKAQNFRNGQGFLYFQHLRKAGGTNFCTLA 74
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: A0A7S2HZR1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HZR1_9EUKA) HSP 1 Score: 55.5 bits (132), Expect = 1.950e-7 Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1
Query: 25 FQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGTGFCEM 168
F+CP + RF+ PD RN FK+G G +YYQHLRKAGG+ FC +
Sbjct: 44 FRCPR--QGRFATPDQRNASRRSRFKQGDGLLYYQHLRKAGGSSFCAL 89
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: A0A7S1CUU6_9STRA (Hypothetical protein n=3 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUU6_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 3.800e-7 Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 19 DRFQCPLREEERFSLPDTRNRMVERDFKEGRG--FIYYQHLRKAGGTGFCEMAGRRV 183
D F CP R ER +LPD R +DF++G+ F+++QHLRKAGGT FC +A + +
Sbjct: 185 DIFPCP-RLGERITLPDARVEQKAKDFRDGKDGTFLFFQHLRKAGGTNFCSLAEKNL 240
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Match: A0A448ZLP9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLP9_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 7.100e-7 Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 25 FQCPLREEERFSLPDTRNRMVERDFKEGRG--FIYYQHLRKAGGTGFCEMA 171
F CP E ER +LPD RN + F+ G F+++QHLRKAGGT FC +A
Sbjct: 154 FPCPGNEGERITLPDQRNHDKAQAFRNGTEPYFLFFQHLRKAGGTNFCTLA 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141455.2879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141455.2879.1 >prot_H-elongata_contig141455.2879.1 ID=prot_H-elongata_contig141455.2879.1|Name=mRNA_H-elongata_contig141455.2879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp VSVANPDRFQCPLREEERFSLPDTRNRMVERDFKEGRGFIYYQHLRKAGGback to top mRNA from alignment at H-elongata_contig141455:954..1136- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141455.2879.1 ID=mRNA_H-elongata_contig141455.2879.1|Name=mRNA_H-elongata_contig141455.2879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig141455:954..1136- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141455:954..1136- >mRNA_H-elongata_contig141455.2879.1 ID=mRNA_H-elongata_contig141455.2879.1|Name=mRNA_H-elongata_contig141455.2879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig141455:954..1136- (Himanthalia elongata Himel1 dioecious)back to top |