mRNA_H-elongata_contig141388.2872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141388.2872.1
Unique NamemRNA_H-elongata_contig141388.2872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.820e-28
Identity = 110/231 (47.62%), Postives = 140/231 (60.61%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCG-RQSVALSTTARFVLCSLSAVEFVGNSASEGSLLTWLKSR-------------GGAATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
            LK+SGG A+ GGA+ +  A VTLN+C FDGNIA  G+GGAVWV GG                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX L+CG  ++  L + +    CSL+ V F  N+AS  ++L +                 GG A F++  VNIT+SVFE N+A   GGA++GGTD+ + +DG   + N       A+AAS+ T+ GNT   +N A  SGGGV
Sbjct:  115 LKLSGGRAARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLFCGGSENATLLSASDNASCSLNGVIFAFNNASSETILDYDNMAAPSTQAPLITLYGGGGAAFYHTVVNITDSVFESNYAQLSGGALFGGTDSAMAIDGVTLENNFTPGFAGALAASTATLGGNTLFMNNSAMQSGGGV 345          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.310e-26
Identity = 104/225 (46.22%), Postives = 138/225 (61.33%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVLCSLSAVEFVGNSASEGSLLT----WLKSR----GGAATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
            L++SGG+A+ GGA+ +  A+VTL+ CVF+GN+A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYCG              CSLS   F+ N+AS  + +     W+ +     GGAA FW AEVNI++SVF  N+A   GGAV+GG  T++ ++GC F+ N+   +GAA+AA S T+ G+T L++N AE++G GV
Sbjct:  153 LRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYWVSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACSATLGGSTTLTNNSAEENGAGV 377          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.670e-25
Identity = 110/227 (48.46%), Postives = 136/227 (59.91%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGR--QSVALSTTARFVLCSLSAVEFVGNSASEGSLLT-------WLKSRGGAAT-FWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
            LK+SGG+A+ GGA+ +  A V LN+CVFDGN A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYCG    S  LS  A    CSLS   F  N+AS  ++L        W+   GG     + A V+IT+S F+ N+A   GGA+YGGTD  I +DGC+F+ N    HGAA+AASS T+ G+T L++N+A  +GGGV
Sbjct:  114 LKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGGVNSTLLSAGAT-AFCSLSDATFEFNNASSETILDYDAITEPWVNLYGGGGVAVYRAVVDITDSEFQGNYAQLSGGALYGGTDAAIAIDGCWFENNFTPGHGAAVAASSATLGGSTVLTNNLATQNGGGV 339          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.880e-20
Identity = 102/233 (43.78%), Postives = 129/233 (55.36%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARF-------VLCSLSAVEFVGNSASEGSLLT-------WLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGVS 657
            LK+SGG+A+ GGAV A  A+V LN+CVFDGN A AG                           XXXXXXXXXXXXXXXXXXXXXXXXX  X LYCG    + + T            CSLS   F  N+AS  +++        W+   GG AA F+   V+IT S F  N+A   GGAVYGG+D+ + +DG  F+ N+   +G  +AASS  + G+T L +N A  +G GVS
Sbjct:  127 LKLSGGSAASGGAVYASAASVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSTTMTXXXXXXXXXXATCSLSGAVFGANNASSETIVDYDLIESPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGSDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGVS 359          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-19
Identity = 101/231 (43.72%), Postives = 126/231 (54.55%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVL------CSLSAVEFVGNSASEGSLLT-------WLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
            L++SGG+A+ GGAV A  A+V LNNCVFDGN A AG                           XXXXXXXXXXXXXXXXXXXXXXXXX  X LYCG    +               CSLS   F  N+AS  +++        W+   GG AA F+   V+IT S F  N+A   GGAVYGGTD+ + +DG  F+ N+   +G  +AASS  + G+T L +N A  +G GV
Sbjct:  127 LRLSGGSAASGGAVYASAASVALNNCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSXXXXXXXXXXXXXXTCSLSGAVFGANNASSETIVDYDLIEAPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGTDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGV 357          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.190e-15
Identity = 96/224 (42.86%), Postives = 123/224 (54.91%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVLCSLSAVEFVGNSASEGSLL-------TWLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGG 651
            LK+SGGNA+ GGA+ +  A+VTL+ CVF+GN+A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYC    V  S  +    CSLS   F  N AS G+ +       TW    GG AA F+ A V IT+S+FE N+A   GG ++GG+ + + +DGC    N+   +G                +SNVA+++GGG
Sbjct:  124 LKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSG-GVESSDPS----CSLSDAAFTSNEASTGAEVSLSDTVETWADLYGGGAAAFYLATVEITDSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNTTPGYGXXXXXXXXXXXXXXXXTSNVADETGGG 342          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.080e-12
Identity = 94/227 (41.41%), Postives = 119/227 (52.42%), Query Frame = 1
Query:    4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYC--GRQSVALSTTARFVLCSLSAVEFVGNSASEGS-------LLTWLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
            L++SGG+A+ GGA+ +  A+VTL+ C+F  N+A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYC  G +S A S       CSLS   F  N A+ G+       + TW    GG AA F+ A V ITNS+FE N+A   GG ++GG+ + + +DGC    N                        NVA++SGGGV
Sbjct:  124 LRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPS-------CSLSDATFTSNVATTGAEVSFSDTIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNXXXXXXXXXXXXXXXXXXXXXXXXNVADESGGGV 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRH4_ECTSI7.820e-2847.62Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH0_ECTSI2.310e-2646.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH3_ECTSI3.670e-2548.46Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JB86_9PHAE1.880e-2043.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI3.620e-1943.72Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH2_ECTSI1.190e-1542.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS31_9PHAE2.080e-1241.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141388contigH-elongata_contig141388:566..1225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size660
Cds size651
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.805946-CDS-H-elongata_contig141388:565..12161622929840.805946-CDS-H-elongata_contig141388:565..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141388 566..1216 -
1691679179.0662665-CDS-H-elongata_contig141388:565..12161691679179.0662665-CDS-H-elongata_contig141388:565..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141388 566..1216 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.8197036-UTR-H-elongata_contig141388:1216..12251622929840.8197036-UTR-H-elongata_contig141388:1216..1225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141388 1217..1225 -
1691679179.074215-UTR-H-elongata_contig141388:1216..12251691679179.074215-UTR-H-elongata_contig141388:1216..1225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141388 1217..1225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141388.2872.1prot_H-elongata_contig141388.2872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141388 566..1216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141388.2872.1

>prot_H-elongata_contig141388.2872.1 ID=prot_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITG
GYFFNNSASESGGAVYALDAGLIIQQEVLFENNTAAEGGALYCGRQSVAL
STTARFVLCSLSAVEFVGNSASEGSLLTWLKSRGGAATFWNAEVNITNSV
FERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGN
TELSSNVAEDSGGGVS*
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mRNA from alignment at H-elongata_contig141388:566..1225-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141388.2872.1 ID=mRNA_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig141388:566..1225- (Himanthalia elongata Himel1 dioecious)
ACGCTGAAAATGTCCGGTGGTAATGCATCGATCGGTGGAGCTGTTCTCGC TGACACAGCGAACGTCACCCTCAACAACTGTGTTTTCGACGGCAATATTG CCGAGGCTGGAAACGGGGGGGCGGTGTGGGTGAACGGCGGAAATTTAATA ATTACCGGCGGATATTTTTTTAACAATAGTGCTAGTGAGTCCGGCGGCGC GGTGTACGCCCTCGACGCCGGTCTAATCATTCAACAAGAAGTCCTGTTCG AGAACAATACGGCCGCCGAAGGAGGAGCATTGTATTGCGGAAGGCAGAGT GTGGCGCTCAGTACTACCGCTCGTTTTGTACTGTGCTCCCTCAGTGCCGT AGAGTTCGTGGGGAATAGTGCGTCGGAGGGATCATTGCTAACTTGGCTCA AAAGCAGGGGTGGAGCGGCGACCTTCTGGAACGCCGAGGTGAACATCACA AACTCAGTATTTGAAAGGAACTTCGCGGGGCGCATGGGTGGAGCGGTGTA CGGGGGAACCGATACCGACATAATCGTAGACGGATGTTATTTCCAATATA ACAGCGTGAATGCTCATGGCGCCGCGATTGCGGCCTCGTCCATGACGGTC TTGGGTAACACAGAGCTCTCAAGTAACGTGGCAGAAGACAGCGGTGGAGG GGTGAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig141388:566..1225-

>mRNA_H-elongata_contig141388.2872.1 ID=mRNA_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig141388:566..1225- (Himanthalia elongata Himel1 dioecious)
ATGTCCGGTGGTAATGCATCGATCGGTGGAGCTGTTCTCGCTGACACAGC
GAACGTCACCCTCAACAACTGTGTTTTCGACGGCAATATTGCCGAGGCTG
GAAACGGGGGGGCGGTGTGGGTGAACGGCGGAAATTTAATAATTACCGGC
GGATATTTTTTTAACAATAGTGCTAGTGAGTCCGGCGGCGCGGTGTACGC
CCTCGACGCCGGTCTAATCATTCAACAAGAAGTCCTGTTCGAGAACAATA
CGGCCGCCGAAGGAGGAGCATTGTATTGCGGAAGGCAGAGTGTGGCGCTC
AGTACTACCGCTCGTTTTGTACTGTGCTCCCTCAGTGCCGTAGAGTTCGT
GGGGAATAGTGCGTCGGAGGGATCATTGCTAACTTGGCTCAAAAGCAGGG
GTGGAGCGGCGACCTTCTGGAACGCCGAGGTGAACATCACAAACTCAGTA
TTTGAAAGGAACTTCGCGGGGCGCATGGGTGGAGCGGTGTACGGGGGAAC
CGATACCGACATAATCGTAGACGGATGTTATTTCCAATATAACAGCGTGA
ATGCTCATGGCGCCGCGATTGCGGCCTCGTCCATGACGGTCTTGGGTAAC
ACAGAGCTCTCAAGTAACGTGGCAGAAGACAGCGGTGGAGGGGTGAGTTG
AATGTCCGGTGGTAATGCATCGATCGGTGGAGCTGTTCTCGCTGACACAG
CGAACGTCACCCTCAACAACTGTGTTTTCGACGGCAATATTGCCGAGGCT
GGAAACGGGGGGGCGGTGTGGGTGAACGGCGGAAATTTAATAATTACCGG
CGGATATTTTTTTAACAATAGTGCTAGTGAGTCCGGCGGCGCGGTGTACG
CCCTCGACGCCGGTCTAATCATTCAACAAGAAGTCCTGTTCGAGAACAAT
ACGGCCGCCGAAGGAGGAGCATTGTATTGCGGAAGGCAGAGTGTGGCGCT
CAGTACTACCGCTCGTTTTGTACTGTGCTCCCTCAGTGCCGTAGAGTTCG
TGGGGAATAGTGCGTCGGAGGGATCATTGCTAACTTGGCTCAAAAGCAGG
GGTGGAGCGGCGACCTTCTGGAACGCCGAGGTGAACATCACAAACTCAGT
ATTTGAAAGGAACTTCGCGGGGCGCATGGGTGGAGCGGTGTACGGGGGAA
CCGATACCGACATAATCGTAGACGGATGTTATTTCCAATATAACAGCGTG
AATGCTCATGGCGCCGCGATTGCGGCCTCGTCCATGACGGTCTTGGGTAA
CACAGAGCTCTCAAGTAACGTGGCAGAAGACAGCGGTGGAGGGGTGAGTT
GA
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