mRNA_H-elongata_contig141326.2868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141326.2868.1
Unique NamemRNA_H-elongata_contig141326.2868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141326.2868.1 vs. uniprot
Match: A0A6H5K121_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K121_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-11
Identity = 45/108 (41.67%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:    1 RTGPRRWSLLTPTVLWSVVILAMTPSFYGFGLVPPSGWSSLVTPPVPGNCAASFGRGSGGGAVAAAEPISGGGFQRWKWRGSPLGAASWLKKRVRDGKQMIVAQVCTV 324
            R GPRRW+LLTPTVLWSVVILAM PSFYGF  V                                              +GSP  AASWLK+RVRDGK+ +  QV ++
Sbjct:   11 RGGPRRWTLLTPTVLWSVVILAMMPSFYGF--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVKGSPFAAASWLKERVRDGKRRVQMQVMSM 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141326.2868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K121_9PHAE5.030e-1141.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141326contigH-elongata_contig141326:1014..1337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.59752-CDS-H-elongata_contig141326:1013..13371622929840.59752-CDS-H-elongata_contig141326:1013..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141326 1014..1337 +
1691679178.9793897-CDS-H-elongata_contig141326:1013..13371691679178.9793897-CDS-H-elongata_contig141326:1013..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141326 1014..1337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141326.2868.1prot_H-elongata_contig141326.2868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141326 1014..1337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141326.2868.1

>prot_H-elongata_contig141326.2868.1 ID=prot_H-elongata_contig141326.2868.1|Name=mRNA_H-elongata_contig141326.2868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
RTGPRRWSLLTPTVLWSVVILAMTPSFYGFGLVPPSGWSSLVTPPVPGNC
AASFGRGSGGGAVAAAEPISGGGFQRWKWRGSPLGAASWLKKRVRDGKQM
IVAQVCTV
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mRNA from alignment at H-elongata_contig141326:1014..1337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141326.2868.1 ID=mRNA_H-elongata_contig141326.2868.1|Name=mRNA_H-elongata_contig141326.2868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig141326:1014..1337+ (Himanthalia elongata Himel1 dioecious)
CGCACTGGTCCGCGACGCTGGTCGCTTTTGACGCCGACCGTGCTTTGGTC
GGTGGTTATCCTTGCGATGACACCGAGCTTTTACGGCTTTGGTCTCGTTC
CCCCCTCGGGATGGTCTAGCCTGGTCACGCCGCCGGTCCCGGGTAACTGC
GCCGCTAGCTTTGGGCGCGGGAGTGGGGGTGGAGCCGTCGCTGCGGCCGA
GCCTATATCCGGAGGAGGTTTCCAGAGGTGGAAGTGGCGCGGTTCACCCC
TGGGAGCGGCGTCTTGGCTGAAGAAGCGAGTGCGGGACGGAAAGCAAATG
ATCGTGGCGCAGGTCTGTACCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig141326:1014..1337+

>mRNA_H-elongata_contig141326.2868.1 ID=mRNA_H-elongata_contig141326.2868.1|Name=mRNA_H-elongata_contig141326.2868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig141326:1014..1337+ (Himanthalia elongata Himel1 dioecious)
CGCACTGGTCCGCGACGCTGGTCGCTTTTGACGCCGACCGTGCTTTGGTC
GGTGGTTATCCTTGCGATGACACCGAGCTTTTACGGCTTTGGTCTCGTTC
CCCCCTCGGGATGGTCTAGCCTGGTCACGCCGCCGGTCCCGGGTAACTGC
GCCGCTAGCTTTGGGCGCGGGAGTGGGGGTGGAGCCGTCGCTGCGGCCGA
GCCTATATCCGGAGGAGGTTTCCAGAGGTGGAAGTGGCGCGGTTCACCCC
TGGGAGCGGCGTCTTGGCTGAAGAAGCGAGTGCGGGACGGAAAGCAAATG
ATCGTGGCGCAGGTCTGTACCGTACGCACTGGTCCGCGACGCTGGTCGCT
TTTGACGCCGACCGTGCTTTGGTCGGTGGTTATCCTTGCGATGACACCGA
GCTTTTACGGCTTTGGTCTCGTTCCCCCCTCGGGATGGTCTAGCCTGGTC
ACGCCGCCGGTCCCGGGTAACTGCGCCGCTAGCTTTGGGCGCGGGAGTGG
GGGTGGAGCCGTCGCTGCGGCCGAGCCTATATCCGGAGGAGGTTTCCAGA
GGTGGAAGTGGCGCGGTTCACCCCTGGGAGCGGCGTCTTGGCTGAAGAAG
CGAGTGCGGGACGGAAAGCAAATGATCGTGGCGCAGGTCTGTACCGTA
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