mRNA_H-elongata_contig141325.2867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141325.2867.1
Unique NamemRNA_H-elongata_contig141325.2867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141325.2867.1 vs. uniprot
Match: D7FZ77_ECTSI (Inosine triphosphate pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ77_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.740e-19
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   10 VAIRLLKWVEGPLMATSEVSPQLMERVGAYLGRLHVELETFYDKSLLRNHVW 165
            +++RLLKWVEGP+M +SEV+P+LME+ GAYLGR+ VEL+ FYDKSLLR H W
Sbjct:  143 LSVRLLKWVEGPMMKSSEVTPELMEKTGAYLGRMQVELDNFYDKSLLRGHTW 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141325.2867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ77_ECTSI6.740e-1969.23Inosine triphosphate pyrophosphatase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141325contigH-elongata_contig141325:1273..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7FZ77
KEGG rclassRC00002
KEGG koko:K01519
KEGG ReactionR00426,R00720,R01855,R02100,R02720,R03531,R08243
KEGG Pathwayko00230,ko00983,ko01100,map00230,map00983,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
EggNOG free text desc.NADH pyrophosphatase activity
EggNOG OGsCOG0127@1,KOG3222@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.5506399-CDS-H-elongata_contig141325:1272..14401622929840.5506399-CDS-H-elongata_contig141325:1272..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141325 1273..1440 -
1691679178.9673328-CDS-H-elongata_contig141325:1272..14401691679178.9673328-CDS-H-elongata_contig141325:1272..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141325 1273..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141325.2867.1prot_H-elongata_contig141325.2867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141325 1273..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141325.2867.1

>prot_H-elongata_contig141325.2867.1 ID=prot_H-elongata_contig141325.2867.1|Name=mRNA_H-elongata_contig141325.2867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
VYRVAIRLLKWVEGPLMATSEVSPQLMERVGAYLGRLHVELETFYDKSLL
RNHVW*
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mRNA from alignment at H-elongata_contig141325:1273..1440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141325.2867.1 ID=mRNA_H-elongata_contig141325.2867.1|Name=mRNA_H-elongata_contig141325.2867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig141325:1273..1440- (Himanthalia elongata Himel1 dioecious)
GTGTACAGGGTCGCGATCCGCCTTCTCAAGTGGGTAGAGGGCCCGCTCAT
GGCGACGAGCGAAGTCTCGCCGCAGCTGATGGAGAGGGTCGGGGCGTACC
TCGGCAGGCTTCATGTGGAGCTAGAAACCTTCTACGACAAGTCGCTCCTC
AGAAACCACGTTTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig141325:1273..1440-

>mRNA_H-elongata_contig141325.2867.1 ID=mRNA_H-elongata_contig141325.2867.1|Name=mRNA_H-elongata_contig141325.2867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig141325:1273..1440- (Himanthalia elongata Himel1 dioecious)
GTGTACAGGGTCGCGATCCGCCTTCTCAAGTGGGTAGAGGGCCCGCTCAT
GGCGACGAGCGAAGTCTCGCCGCAGCTGATGGAGAGGGTCGGGGCGTACC
TCGGCAGGCTTCATGTGGAGCTAGAAACCTTCTACGACAAGTCGCTCCTC
AGAAACCACGTTTGGTAAGTGTACAGGGTCGCGATCCGCCTTCTCAAGTG
GGTAGAGGGCCCGCTCATGGCGACGAGCGAAGTCTCGCCGCAGCTGATGG
AGAGGGTCGGGGCGTACCTCGGCAGGCTTCATGTGGAGCTAGAAACCTTC
TACGACAAGTCGCTCCTCAGAAACCACGTTTGGTAA
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