mRNA_H-elongata_contig141321.2865.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141321.2865.1
Unique NamemRNA_H-elongata_contig141321.2865.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.890e-46
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    1 QASTYIKMCEVDKEGTKVYIGPLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKIVE 270
            + ST IKM E DKEG KVY+ PL+WWRVRC DFPHLANLARR+LAIPATQ ESERLFSCAGNIVTKNRN L+PTT+ELLVLLRHSWKIVE
Sbjct:  202 KVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 291          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 9.830e-30
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query:   91 TDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKIVE 270
            TDFPHLANLARR+LAIPATQ +SERLFSCAGNIVTKNRN L+PTT+ELLVLLRHSWKIVE
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 211          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: U9U296_RHIID (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9U296_RHIID)

HSP 1 Score: 79.0 bits (193), Expect = 2.700e-16
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   64 PLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKIV 267
            PL WW+   T FP L+ LAR+ LAIPAT T SERLFS AGN++T  R +L+P  +E LV  + +W++V
Sbjct:  116 PLTWWKTNKTRFPVLSKLARKYLAIPATSTPSERLFSEAGNVMTIKRTQLAPNMLENLVFCKKNWRLV 183          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: U9TMC6_RHIID (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9TMC6_RHIID)

HSP 1 Score: 75.5 bits (184), Expect = 2.800e-16
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   67 LNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSW 258
            L WWR+  T FP L+ LAR+ LAIPAT T SERLFS AGN++T  R +L+P  +E LV  + +W
Sbjct:    1 LTWWRINKTRFPVLSKLARKYLAIPATSTPSERLFSEAGNVMTIKRTQLAPNMLENLVFCKKNW 64          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: UPI0011C102C8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C102C8)

HSP 1 Score: 80.1 bits (196), Expect = 4.480e-16
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 QASTYIKMCEVDKEGTKVYIGPLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHS 255
            +  +Y++  EVD E       PL WWR+  T+FP LANLA++ + IPAT   SER FS  GNIVT +R+ L P T++ LV L ++
Sbjct:  205 EIKSYLQSVEVDAEAN-----PLEWWRLHQTNFPRLANLAKKYICIPATSAPSERAFSTGGNIVTCHRSALKPETVDKLVFLANN 284          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: UPI001C151A4B (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C151A4B)

HSP 1 Score: 79.7 bits (195), Expect = 1.060e-15
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   64 PLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKI 264
            PL WWR+  T FP L+ LAR+ LAIPAT T SERLFS AGN++T  R +L+P  +E LV  + +W++
Sbjct:  264 PLTWWRINKTRFPVLSKLARKYLAIPATSTPSERLFSEAGNVMTIKRTQLAPNILENLVFCKKNWRL 330          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: UPI001C15BA5C (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C15BA5C)

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   64 PLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKIV 267
            PL WW+     FP L+ LAR+ LAIPAT T SERLFS AGN+VT  R +L P T+E LV  + +W++V
Sbjct:  272 PLLWWKTNKAQFPILSKLARKYLAIPATSTPSERLFSEAGNVVTIKRTQLLPNTLENLVFCKKNWRLV 339          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 72.8 bits (177), Expect = 8.030e-15
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   64 PLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKI 264
            PL WW+     FP LA+LA+  L +PAT T SERLFS AGNIV+K R  LSP  I++L    +S  +
Sbjct:   33 PLQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTFFHYSTAV 99          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 8.920e-15
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 QASTYIKMCEVDKEGT---KVYIGPLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKIVE 270
            +A+  I++ ++ K  T   KV+  PL+ WR +  ++P LA LARR+LAIP++Q +SER+FS AG  VT  R++L    +ELLV LR+ W +V+
Sbjct:  459 KAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVD 551          
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Match: A0A015N0K8_RHIIW (Dimer_Tnp_hAT domain-containing protein n=5 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015N0K8_RHIIW)

HSP 1 Score: 75.1 bits (183), Expect = 1.420e-14
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   64 PLNWWRVRCTDFPHLANLARRMLAIPATQTESERLFSCAGNIVTKNRNKLSPTTIELLVLLRHSWKIV 267
            PL WW+   T F  L+ LAR+ LAIPAT T SERLFS AGN++T  R +L+P  +E LV  + +W++V
Sbjct:  146 PLTWWKTNKTRFLVLSKLARKYLAIPATSTPSERLFSEAGNVMTIKRTQLAPNMLENLVFCKKNWRLV 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141321.2865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.890e-4683.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE9.830e-3090.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
U9U296_RHIID2.700e-1652.94Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rh... [more]
U9TMC6_RHIID2.800e-1654.69Uncharacterized protein (Fragment) n=2 Tax=Rhizoph... [more]
UPI0011C102C84.480e-1645.88zinc finger BED domain-containing protein 1-like n... [more]
UPI001C151A4B1.060e-1553.73Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
UPI001C15BA5C2.200e-1554.41Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
A0A1A7ZCN3_NOTFU8.030e-1550.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
D8LCS5_ECTSI8.920e-1544.09Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A015N0K8_RHIIW1.420e-1451.47Dimer_Tnp_hAT domain-containing protein n=5 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141321contigH-elongata_contig141321:1156..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue8.3e-14
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.3554578-UTR-H-elongata_contig141321:1155..11761622929840.3554578-UTR-H-elongata_contig141321:1155..1176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141321 1156..1176 +
1691679178.9062583-UTR-H-elongata_contig141321:1155..11761691679178.9062583-UTR-H-elongata_contig141321:1155..1176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141321 1156..1176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.372393-CDS-H-elongata_contig141321:1176..14251622929840.372393-CDS-H-elongata_contig141321:1176..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141321 1177..1425 +
1691679178.9172935-CDS-H-elongata_contig141321:1176..14251691679178.9172935-CDS-H-elongata_contig141321:1176..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141321 1177..1425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141321.2865.1prot_H-elongata_contig141321.2865.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141321 1177..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141321.2865.1

>prot_H-elongata_contig141321.2865.1 ID=prot_H-elongata_contig141321.2865.1|Name=mRNA_H-elongata_contig141321.2865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MCEVDKEGTKVYIGPLNWWRVRCTDFPHLANLARRMLAIPATQTESERLF
SCAGNIVTKNRNKLSPTTIELLVLLRHSWKIVE
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mRNA from alignment at H-elongata_contig141321:1156..1425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141321.2865.1 ID=mRNA_H-elongata_contig141321.2865.1|Name=mRNA_H-elongata_contig141321.2865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig141321:1156..1425+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTCCACATATATCAAGATGTGCGAGGTCGACAAGGAAGGCACAAA GGTGTACATTGGCCCCTTGAACTGGTGGCGGGTACGGTGCACAGACTTCC CGCACTTGGCCAACCTCGCTCGCCGTATGCTGGCCATCCCCGCCACTCAG ACAGAGTCCGAGCGTCTGTTCTCCTGCGCTGGAAACATCGTCACGAAGAA TCGCAACAAATTGTCCCCCACCACCATCGAGCTGCTTGTCCTCCTGCGCC ACTCGTGGAAGATAGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig141321:1156..1425+

>mRNA_H-elongata_contig141321.2865.1 ID=mRNA_H-elongata_contig141321.2865.1|Name=mRNA_H-elongata_contig141321.2865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig141321:1156..1425+ (Himanthalia elongata Himel1 dioecious)
ATGTGCGAGGTCGACAAGGAAGGCACAAAGGTGTACATTGGCCCCTTGAA
CTGGTGGCGGGTACGGTGCACAGACTTCCCGCACTTGGCCAACCTCGCTC
GCCGTATGCTGGCCATCCCCGCCACTCAGACAGAGTCCGAGCGTCTGTTC
TCCTGCGCTGGAAACATCGTCACGAAGAATCGCAACAAATTGTCCCCCAC
CACCATCGAGCTGCTTGTCCTCCTGCGCCACTCGTGGAAGATAGTGGAGA
TGTGCGAGGTCGACAAGGAAGGCACAAAGGTGTACATTGGCCCCTTGAAC
TGGTGGCGGGTACGGTGCACAGACTTCCCGCACTTGGCCAACCTCGCTCG
CCGTATGCTGGCCATCCCCGCCACTCAGACAGAGTCCGAGCGTCTGTTCT
CCTGCGCTGGAAACATCGTCACGAAGAATCGCAACAAATTGTCCCCCACC
ACCATCGAGCTGCTTGTCCTCCTGCGCCACTCGTGGAAGATAGTGGAG
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