mRNA_H-elongata_contig14132.2863.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: D8LRL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL4_ECTSI) HSP 1 Score: 313 bits (803), Expect = 5.880e-101 Identity = 173/291 (59.45%), Postives = 197/291 (67.70%), Query Frame = 1
Query: 34 VAWRSGGTTLVRAVPSAHACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVAL---------DGQLACADVSVLNNGKGNIREVLRVSWVEDRVPPEAA 879
VAW+S TL+R VPSA ACP VPEESDLV G+YEGGLKVWEASLDLV++L+S+ +G D G G A V GR + VLELGCGHG PGIVAL+QG+ VCFSDFN EVI++VT PNVRLNV W LAEYYSGDWSSLSPLL+ ++GGG FDLILTAETLYTTAVADK+L M+ RHLA GQALVASKRFYFGTGGSTQYFR +A +L C+DV+V++ GKGNIREVLRVSW E P E A
Sbjct: 103 VAWKSEDLTLLRVVPSAKACPGVPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSCP--VGLD------------------GGSG-------------GDASVGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNVEAHHWPLAEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVARHLAPGGQALVASKRFYFGTGGSTQYFREVIAARRCSAAAEASRRLVCSDVAVIDTGKGNIREVLRVSWEE---PEEGA 357
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A6H5JBA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA0_9PHAE) HSP 1 Score: 291 bits (746), Expect = 8.810e-93 Identity = 164/292 (56.16%), Postives = 193/292 (66.10%), Query Frame = 1
Query: 40 WRSGGTTLVRA---VPSAHACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVAL---------DGQLACADVSVLNNGKGNIREVLRVSWVEDRVPPEAA 879
WR G T + + + CP VPEESDLV G+YEGGLKVWEASLDLV++L+S+ + +G D G G ++G+ V GR + VLELGCGHG PGIVAL+QG+ VCFSDFN EVI++VT PNVRLNV W LAEYYSGDWSSLSPLL+ ++GGG FDLILTAETLYTTAVADK+L M+ RHLA GQALVASKRFYFGTGGSTQYFR +A +L C+D +V++ GKGNIREVLRVSW E P E A
Sbjct: 72 WRGGLRTSLSSASFLQRTATCPDVPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSSP--MGLD------------------GGSG------------EDGS-VGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNVEAHHWPLAEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVGRHLAPGGQALVASKRFYFGTGGSTQYFREAIAARCNSAAVEASRRLVCSDAAVIDTGKGNIREVLRVSWEE---PEEGA 327
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A835Z957_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z957_9STRA) HSP 1 Score: 171 bits (433), Expect = 1.720e-46 Identity = 110/281 (39.15%), Postives = 139/281 (49.47%), Query Frame = 1
Query: 100 VPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFNSEVIKEVTAPNVRLNVSDRF-----------------------------WGLAEYYSGDWSSLSPLL--DGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSW 849
V EE+DLV GVYEGGLKVWE S+DL++Y++ P++ E + +RV+ELGCGHGLPG+ ALRQG HV F+D+N EV++ T PNVR N + G A +Y GDW L +L DG+E RFDLILTAETLYT +I +I LA G ALVA+KR+YFG GGS +F+ VA +AC V++ G NIREVL VSW
Sbjct: 62 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDR------------------PEVYGPEKMAG-----------------------------KRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEE---RFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 290
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: T0R0A7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R0A7_SAPDV) HSP 1 Score: 167 bits (423), Expect = 1.380e-45 Identity = 101/246 (41.06%), Postives = 134/246 (54.47%), Query Frame = 1
Query: 115 DLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSW 849
DL GVYEGG K+WE S+DL++YL +Q+ AD + RV+ELGCGHGLPGI AL+QG HV FSD+NSEVI+ T PN DR A +YSGDW+++S + E +DL+LTAETLYT V +L MI RHL R G ALVA+K +YFGTGGS +F++ VA +G + V N+ + NIRE+++V++
Sbjct: 77 DLETGVYEGGFKLWECSIDLIEYL-----------------------------------------------QQHQADFP-IGACGLRVMELGCGHGLPGIFALQQGASHVLFSDYNSEVIELATIPNTMRCAGDRLHH-ASFYSGDWANVSEAMAANEDAS-YDLVLTAETLYTEDVTISLLAMIKRHLKRSGVALVAAKTYYFGTGGSVHHFKDLVAREGDMVATTVWNGNDCRSNIREIVQVTY 272
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A7S3HG77_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG77_9STRA) HSP 1 Score: 163 bits (413), Expect = 4.430e-44 Identity = 103/249 (41.37%), Postives = 127/249 (51.00%), Query Frame = 1
Query: 106 EESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSP-LLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVS 846
+E+D++ GVYEGG KVWE S+DL L+ K T P++ R +ELGCGHG PG+ AL+ G V FSD N+EVI VT PN+ LN D AE YSGDW LS +L G+FDLIL+AETLYT A +KIL MILRHL+ G AL+ASKRFYFG GG T V G L V +G NIRE++R++
Sbjct: 76 KETDIIPGVYEGGYKVWECSVDLTAMLLQ--------------KACTLPELSTC-----------------------------------RAIELGCGHGFPGVAALKLGCPRVVFSDLNAEVINAVTWPNIFLNARD-IMNRAECYSGDWDELSSTVLSRGSDDGKFDLILSAETLYTEASCNKILSMILRHLSNTGVALIASKRFYFGVGGGTYTLETLVQACGVLNYHVEQVYQDGASNIREIVRLT 274
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: M4BGT3_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGT3_HYAAE) HSP 1 Score: 162 bits (411), Expect = 1.210e-43 Identity = 102/255 (40.00%), Postives = 139/255 (54.51%), Query Frame = 1
Query: 112 SDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLH-VCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKE----GGGRFDLILTAETLYTTAVADKILGMILRHLAR--DGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWVE 855
+D+ GVYEGG K+WE +LDLV L E R+ GA +S V LELGCGHGLPGI AL+QG V FSD+N EV++ T PNVR NV ++ + AE+Y+G WSS+S ++ E +FDLILTAET+YT AVA ++ I RHL R + +ALVA+K++YFGT GS Q+F V DG V +G+ NIRE++++++V+
Sbjct: 82 TDVQTGVYEGGFKLWECALDLVKLL--------------------------------------------ETQRRQGATMSASV------LELGCGHGLPGIYALQQGAELVTFSDYNKEVLELTTCPNVRQNVDEQVFERAEFYAGAWSSMSQYMETMELKTQDQMQFDLILTAETIYTDAVAVELYQTIKRHLRRAPNARALVAAKKYYFGTNGSVQHFVGLVRADGVFTADTVWQERDGRSNIREIVQLTYVD 286
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A024UPA8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPA8_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.520e-43 Identity = 99/249 (39.76%), Postives = 132/249 (53.01%), Query Frame = 1
Query: 112 SDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQ-ALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWV 852
SD+ GVYEGG K+WE ++DL+ YL A ++PN V RVLELGCGHGLPG+ AL+QG HV FSD+N EVI+ T PN++ N + A +YSGDW +S + FDLILTAET+YT +V+ ++ I RHL R G ALVA+K +YFGTGGS +F++ VA DG + V N+ K N+RE++ VS+
Sbjct: 85 SDIQTGVYEGGFKLWECAVDLIQYL-------------------------------------AANAPNL------------PVHNGWRVLELGCGHGLPGLHALQQGAAHVTFSDYNHEVIELATIPNLQRNANANDLTKATFYSGDWQLMSEDMLAHGTDMEFDLILTAETIYTESVSVELFQTIQRHLKRRGGIALVAAKSYYFGTGGSVHHFKSLVAQDGTMVARTVWESNDAKSNVREIVHVSYA 284
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: G5A449_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A449_PHYSP) HSP 1 Score: 162 bits (410), Expect = 2.030e-43 Identity = 102/262 (38.93%), Postives = 141/262 (53.82%), Query Frame = 1
Query: 88 ACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLH-VCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDG----KEGGGRFDLILTAETLYTTAVADKILGMILRHLAR--DGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWV 852
A ++ SD+ GVYEGG K+WE ++DLV ++ + RQ+GA + V LELGCGHGLPGI AL++G V FSD+N EV++ T+PNVR NVSD+ + AE+Y+G WSS++ + E +FDLILTAET+YT AVA ++ I RHL R +ALVA+K++YFGT GS Q+F V DG L V N + NIRE++++S+
Sbjct: 82 AISSILSTSDVQTGVYEGGFKLWECAVDLVRFVEAQ-------------------------------------------LRQDGAQMPPAV------LELGCGHGLPGIHALQRGAQRVVFSDYNKEVLELTTSPNVRRNVSDQLYSKAEFYAGAWSSMTEYMRDVEHLSEDQMQFDLILTAETIYTEAVAVELYQTIKRHLRRVPHARALVAAKKYYFGTNGSVQHFVGLVQADGVLRAETVWEERNCRSNIREIVQLSYA 294
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A1V9YGQ4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGQ4_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.270e-42 Identity = 97/247 (39.27%), Postives = 127/247 (51.42%), Query Frame = 1
Query: 112 SDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSW 849
SDL GVYEGG K+WE S+DL++YL AH + + R RV+ELGCGHGLPGI AL+QG HV FSD+NSEVI T PN + V+ A +YSGDW +S + +DLILTAETLYT V +L I RHL G ALVA+K +YFGTGGS + ++ +A G + V N+ + NIRE+++V++
Sbjct: 77 SDLETGVYEGGFKLWECSVDLIEYL------------------------------------EAHK------------EAFGIGTRSLRVMELGCGHGLPGIYALQQGAAHVLFSDYNSEVIDLATIPNAQ-RVASAHLNRATFYSGDWGHMSAAMTAANEDTEYDLILTAETLYTEEVTIALLETIKRHLKPSGVALVAAKTYYFGTGGSVHHLKSLIAATGTMVATTVWNGNDCRSNIREIVQVTY 274
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A6A4FT14_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FT14_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.080e-41 Identity = 101/262 (38.55%), Postives = 142/262 (54.20%), Query Frame = 1
Query: 88 ACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLH-VCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDG----KEGGGRFDLILTAETLYTTAVADKILGMILRHLAR--DGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWV 852
A ++ SD+ GVYEGG K+WE ++DLV ++ E++ RQ+GA + V LELGCGHGL GI AL++G V FSD+N EV++ T+PNVR NV D+ +G AE+Y+G WSS++ + E +FDLILTAET+YT AVA ++ I RHL R +ALVA+K++YFGT GS Q+F V DG L V + + NIRE++++S+
Sbjct: 79 AISSILSSSDVQTGVYEGGFKLWEGAVDLVRFV-------------------------ELQ------------------LRQDGAQMPSTV------LELGCGHGLSGIHALQRGAERVVFSDYNKEVLELTTSPNVRRNVDDQLYGKAEFYAGAWSSMTDYMRNVEQLSEEQMQFDLILTAETIYTEAVAVELYQAIKRHLRRAPHARALVAAKKYYFGTNGSVQHFVGLVQADGVLRAETVWEERDCRSNIREIVQLSYA 291 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14132.2863.1 >prot_H-elongata_contig14132.2863.1 ID=prot_H-elongata_contig14132.2863.1|Name=mRNA_H-elongata_contig14132.2863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp MAAGLEAQVAWRSGGTTLVRAVPSAHACPTVPEESDLVHGVYEGGLKVWEback to top mRNA from alignment at H-elongata_contig14132:786..3882+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14132.2863.1 ID=mRNA_H-elongata_contig14132.2863.1|Name=mRNA_H-elongata_contig14132.2863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3097bp|location=Sequence derived from alignment at H-elongata_contig14132:786..3882+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14132:786..3882+ >mRNA_H-elongata_contig14132.2863.1 ID=mRNA_H-elongata_contig14132.2863.1|Name=mRNA_H-elongata_contig14132.2863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig14132:786..3882+ (Himanthalia elongata Himel1 dioecious)back to top |