mRNA_H-elongata_contig14132.2863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14132.2863.1
Unique NamemRNA_H-elongata_contig14132.2863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: D8LRL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL4_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 5.880e-101
Identity = 173/291 (59.45%), Postives = 197/291 (67.70%), Query Frame = 1
Query:   34 VAWRSGGTTLVRAVPSAHACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVAL---------DGQLACADVSVLNNGKGNIREVLRVSWVEDRVPPEAA 879
            VAW+S   TL+R VPSA ACP VPEESDLV G+YEGGLKVWEASLDLV++L+S+       +G D                   G G               A V    GR + VLELGCGHG PGIVAL+QG+ VCFSDFN EVI++VT PNVRLNV    W LAEYYSGDWSSLSPLL+ ++GGG FDLILTAETLYTTAVADK+L M+ RHLA  GQALVASKRFYFGTGGSTQYFR  +A            +L C+DV+V++ GKGNIREVLRVSW E   P E A
Sbjct:  103 VAWKSEDLTLLRVVPSAKACPGVPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSCP--VGLD------------------GGSG-------------GDASVGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNVEAHHWPLAEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVARHLAPGGQALVASKRFYFGTGGSTQYFREVIAARRCSAAAEASRRLVCSDVAVIDTGKGNIREVLRVSWEE---PEEGA 357          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A6H5JBA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA0_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 8.810e-93
Identity = 164/292 (56.16%), Postives = 193/292 (66.10%), Query Frame = 1
Query:   40 WRSGGTTLVRA---VPSAHACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVAL---------DGQLACADVSVLNNGKGNIREVLRVSWVEDRVPPEAA 879
            WR G  T + +   +     CP VPEESDLV G+YEGGLKVWEASLDLV++L+S+   +   +G D                   G G            ++G+ V    GR + VLELGCGHG PGIVAL+QG+ VCFSDFN EVI++VT PNVRLNV    W LAEYYSGDWSSLSPLL+ ++GGG FDLILTAETLYTTAVADK+L M+ RHLA  GQALVASKRFYFGTGGSTQYFR  +A            +L C+D +V++ GKGNIREVLRVSW E   P E A
Sbjct:   72 WRGGLRTSLSSASFLQRTATCPDVPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSSP--MGLD------------------GGSG------------EDGS-VGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNVEAHHWPLAEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVGRHLAPGGQALVASKRFYFGTGGSTQYFREAIAARCNSAAVEASRRLVCSDAAVIDTGKGNIREVLRVSWEE---PEEGA 327          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A835Z957_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z957_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.720e-46
Identity = 110/281 (39.15%), Postives = 139/281 (49.47%), Query Frame = 1
Query:  100 VPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFNSEVIKEVTAPNVRLNVSDRF-----------------------------WGLAEYYSGDWSSLSPLL--DGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSW 849
            V EE+DLV GVYEGGLKVWE S+DL++Y++                    P++   E +                               +RV+ELGCGHGLPG+ ALRQG HV F+D+N EV++  T PNVR N  +                                G A +Y GDW  L  +L  DG+E   RFDLILTAETLYT     +I  +I   LA  G ALVA+KR+YFG GGS  +F+  VA    +AC    V++ G  NIREVL VSW
Sbjct:   62 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDR------------------PEVYGPEKMAG-----------------------------KRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEE---RFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 290          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: T0R0A7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R0A7_SAPDV)

HSP 1 Score: 167 bits (423), Expect = 1.380e-45
Identity = 101/246 (41.06%), Postives = 134/246 (54.47%), Query Frame = 1
Query:  115 DLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSW 849
            DL  GVYEGG K+WE S+DL++YL                                               +Q+ AD   +     RV+ELGCGHGLPGI AL+QG  HV FSD+NSEVI+  T PN      DR    A +YSGDW+++S  +   E    +DL+LTAETLYT  V   +L MI RHL R G ALVA+K +YFGTGGS  +F++ VA +G +    V   N+ + NIRE+++V++
Sbjct:   77 DLETGVYEGGFKLWECSIDLIEYL-----------------------------------------------QQHQADFP-IGACGLRVMELGCGHGLPGIFALQQGASHVLFSDYNSEVIELATIPNTMRCAGDRLHH-ASFYSGDWANVSEAMAANEDAS-YDLVLTAETLYTEDVTISLLAMIKRHLKRSGVALVAAKTYYFGTGGSVHHFKDLVAREGDMVATTVWNGNDCRSNIREIVQVTY 272          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A7S3HG77_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG77_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.430e-44
Identity = 103/249 (41.37%), Postives = 127/249 (51.00%), Query Frame = 1
Query:  106 EESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSP-LLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVS 846
            +E+D++ GVYEGG KVWE S+DL   L+               K  T P++                                      R +ELGCGHG PG+ AL+ G   V FSD N+EVI  VT PN+ LN  D     AE YSGDW  LS  +L      G+FDLIL+AETLYT A  +KIL MILRHL+  G AL+ASKRFYFG GG T      V   G L      V  +G  NIRE++R++
Sbjct:   76 KETDIIPGVYEGGYKVWECSVDLTAMLLQ--------------KACTLPELSTC-----------------------------------RAIELGCGHGFPGVAALKLGCPRVVFSDLNAEVINAVTWPNIFLNARD-IMNRAECYSGDWDELSSTVLSRGSDDGKFDLILSAETLYTEASCNKILSMILRHLSNTGVALIASKRFYFGVGGGTYTLETLVQACGVLNYHVEQVYQDGASNIREIVRLT 274          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: M4BGT3_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGT3_HYAAE)

HSP 1 Score: 162 bits (411), Expect = 1.210e-43
Identity = 102/255 (40.00%), Postives = 139/255 (54.51%), Query Frame = 1
Query:  112 SDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLH-VCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKE----GGGRFDLILTAETLYTTAVADKILGMILRHLAR--DGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWVE 855
            +D+  GVYEGG K+WE +LDLV  L                                            E  R+ GA +S  V      LELGCGHGLPGI AL+QG   V FSD+N EV++  T PNVR NV ++ +  AE+Y+G WSS+S  ++  E       +FDLILTAET+YT AVA ++   I RHL R  + +ALVA+K++YFGT GS Q+F   V  DG      V    +G+ NIRE++++++V+
Sbjct:   82 TDVQTGVYEGGFKLWECALDLVKLL--------------------------------------------ETQRRQGATMSASV------LELGCGHGLPGIYALQQGAELVTFSDYNKEVLELTTCPNVRQNVDEQVFERAEFYAGAWSSMSQYMETMELKTQDQMQFDLILTAETIYTDAVAVELYQTIKRHLRRAPNARALVAAKKYYFGTNGSVQHFVGLVRADGVFTADTVWQERDGRSNIREIVQLTYVD 286          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A024UPA8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPA8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.520e-43
Identity = 99/249 (39.76%), Postives = 132/249 (53.01%), Query Frame = 1
Query:  112 SDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQ-ALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWV 852
            SD+  GVYEGG K+WE ++DL+ YL                                     A ++PN              V    RVLELGCGHGLPG+ AL+QG  HV FSD+N EVI+  T PN++ N +      A +YSGDW  +S  +        FDLILTAET+YT +V+ ++   I RHL R G  ALVA+K +YFGTGGS  +F++ VA DG +    V   N+ K N+RE++ VS+ 
Sbjct:   85 SDIQTGVYEGGFKLWECAVDLIQYL-------------------------------------AANAPNL------------PVHNGWRVLELGCGHGLPGLHALQQGAAHVTFSDYNHEVIELATIPNLQRNANANDLTKATFYSGDWQLMSEDMLAHGTDMEFDLILTAETIYTESVSVELFQTIQRHLKRRGGIALVAAKSYYFGTGGSVHHFKSLVAQDGTMVARTVWESNDAKSNVREIVHVSYA 284          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: G5A449_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A449_PHYSP)

HSP 1 Score: 162 bits (410), Expect = 2.030e-43
Identity = 102/262 (38.93%), Postives = 141/262 (53.82%), Query Frame = 1
Query:   88 ACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLH-VCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDG----KEGGGRFDLILTAETLYTTAVADKILGMILRHLAR--DGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWV 852
            A  ++   SD+  GVYEGG K+WE ++DLV ++ +                                             RQ+GA +   V      LELGCGHGLPGI AL++G   V FSD+N EV++  T+PNVR NVSD+ +  AE+Y+G WSS++  +       E   +FDLILTAET+YT AVA ++   I RHL R    +ALVA+K++YFGT GS Q+F   V  DG L    V    N + NIRE++++S+ 
Sbjct:   82 AISSILSTSDVQTGVYEGGFKLWECAVDLVRFVEAQ-------------------------------------------LRQDGAQMPPAV------LELGCGHGLPGIHALQRGAQRVVFSDYNKEVLELTTSPNVRRNVSDQLYSKAEFYAGAWSSMTEYMRDVEHLSEDQMQFDLILTAETIYTEAVAVELYQTIKRHLRRVPHARALVAAKKYYFGTNGSVQHFVGLVQADGVLRAETVWEERNCRSNIREIVQLSYA 294          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A1V9YGQ4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGQ4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.270e-42
Identity = 97/247 (39.27%), Postives = 127/247 (51.42%), Query Frame = 1
Query:  112 SDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGL-HVCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLILTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSW 849
            SDL  GVYEGG K+WE S+DL++YL                                     AH             +   +  R  RV+ELGCGHGLPGI AL+QG  HV FSD+NSEVI   T PN +  V+      A +YSGDW  +S  +        +DLILTAETLYT  V   +L  I RHL   G ALVA+K +YFGTGGS  + ++ +A  G +    V   N+ + NIRE+++V++
Sbjct:   77 SDLETGVYEGGFKLWECSVDLIEYL------------------------------------EAHK------------EAFGIGTRSLRVMELGCGHGLPGIYALQQGAAHVLFSDYNSEVIDLATIPNAQ-RVASAHLNRATFYSGDWGHMSAAMTAANEDTEYDLILTAETLYTEEVTIALLETIKRHLKPSGVALVAAKTYYFGTGGSVHHLKSLIAATGTMVATTVWNGNDCRSNIREIVQVTY 274          
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Match: A0A6A4FT14_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FT14_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.080e-41
Identity = 101/262 (38.55%), Postives = 142/262 (54.20%), Query Frame = 1
Query:   88 ACPTVPEESDLVHGVYEGGLKVWEASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDSPNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLH-VCFSDFNSEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDG----KEGGGRFDLILTAETLYTTAVADKILGMILRHLAR--DGQALVASKRFYFGTGGSTQYFRNQVALDGQLACADVSVLNNGKGNIREVLRVSWV 852
            A  ++   SD+  GVYEGG K+WE ++DLV ++                         E++                   RQ+GA +   V      LELGCGHGL GI AL++G   V FSD+N EV++  T+PNVR NV D+ +G AE+Y+G WSS++  +       E   +FDLILTAET+YT AVA ++   I RHL R    +ALVA+K++YFGT GS Q+F   V  DG L    V    + + NIRE++++S+ 
Sbjct:   79 AISSILSSSDVQTGVYEGGFKLWEGAVDLVRFV-------------------------ELQ------------------LRQDGAQMPSTV------LELGCGHGLSGIHALQRGAERVVFSDYNKEVLELTTSPNVRRNVDDQLYGKAEFYAGAWSSMTDYMRNVEQLSEEQMQFDLILTAETIYTEAVAVELYQAIKRHLRRAPHARALVAAKKYYFGTNGSVQHFVGLVQADGVLRAETVWEERDCRSNIREIVQLSYA 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14132.2863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRL4_ECTSI5.880e-10159.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBA0_9PHAE8.810e-9356.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z957_9STRA1.720e-4639.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
T0R0A7_SAPDV1.380e-4541.06Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S3HG77_9STRA4.430e-4441.37Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
M4BGT3_HYAAE1.210e-4340.00Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
A0A024UPA8_9STRA1.520e-4339.76Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
G5A449_PHYSP2.030e-4338.93Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A1V9YGQ4_9STRA1.270e-4239.27Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A4FT14_9STRA1.080e-4138.55Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14132contigH-elongata_contig14132:786..3882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue7.8e-83
Seed eggNOG ortholog2880.D8LRL4
Preferred nameMETTL18
KEGG koko:K14837,ko:K18803
GOsGO:0000027,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006417,GO:0006450,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016740,GO:0016741,GO:0018021,GO:0018064,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031072,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032259,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0036211,GO:0042038,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:1901564,GO:2000112
EggNOG free text desc.peptidase activity, acting on L-amino acid peptides
EggNOG OGsCOG3897@1,KOG2920@2759
EC2.1.1.85
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-12_000250.1
Exons6
Model size1193
Cds size876
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14132.2863.1prot_H-elongata_contig14132.2863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14132 795..3574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.147354-UTR-H-elongata_contig14132:785..7941622929840.147354-UTR-H-elongata_contig14132:785..794Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14132 786..794 +
1691679178.807353-UTR-H-elongata_contig14132:785..7941691679178.807353-UTR-H-elongata_contig14132:785..794Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14132 786..794 +
1622929840.287305-UTR-H-elongata_contig14132:3574..38821622929840.287305-UTR-H-elongata_contig14132:3574..3882Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14132 3575..3882 +
1691679178.8973215-UTR-H-elongata_contig14132:3574..38821691679178.8973215-UTR-H-elongata_contig14132:3574..3882Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14132 3575..3882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.1908324-CDS-H-elongata_contig14132:794..8731622929840.1908324-CDS-H-elongata_contig14132:794..873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 795..873 +
1691679178.8192797-CDS-H-elongata_contig14132:794..8731691679178.8192797-CDS-H-elongata_contig14132:794..873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 795..873 +
1622929840.210731-CDS-H-elongata_contig14132:1087..13831622929840.210731-CDS-H-elongata_contig14132:1087..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 1088..1383 +
1691679178.8352337-CDS-H-elongata_contig14132:1087..13831691679178.8352337-CDS-H-elongata_contig14132:1087..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 1088..1383 +
1622929840.2255194-CDS-H-elongata_contig14132:1839..18851622929840.2255194-CDS-H-elongata_contig14132:1839..1885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 1840..1885 +
1691679178.8494995-CDS-H-elongata_contig14132:1839..18851691679178.8494995-CDS-H-elongata_contig14132:1839..1885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 1840..1885 +
1622929840.2416866-CDS-H-elongata_contig14132:2361..25101622929840.2416866-CDS-H-elongata_contig14132:2361..2510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 2362..2510 +
1691679178.861449-CDS-H-elongata_contig14132:2361..25101691679178.861449-CDS-H-elongata_contig14132:2361..2510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 2362..2510 +
1622929840.258818-CDS-H-elongata_contig14132:2736..28081622929840.258818-CDS-H-elongata_contig14132:2736..2808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 2737..2808 +
1691679178.8746896-CDS-H-elongata_contig14132:2736..28081691679178.8746896-CDS-H-elongata_contig14132:2736..2808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 2737..2808 +
1622929840.270968-CDS-H-elongata_contig14132:3340..35741622929840.270968-CDS-H-elongata_contig14132:3340..3574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 3341..3574 +
1691679178.8851938-CDS-H-elongata_contig14132:3340..35741691679178.8851938-CDS-H-elongata_contig14132:3340..3574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 3341..3574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14132.2863.1

>prot_H-elongata_contig14132.2863.1 ID=prot_H-elongata_contig14132.2863.1|Name=mRNA_H-elongata_contig14132.2863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MAAGLEAQVAWRSGGTTLVRAVPSAHACPTVPEESDLVHGVYEGGLKVWE
ASLDLVDYLVSSGMGNTEHLGKDQDKDVTTPKIEEVESLRSSGHGRAHDS
PNFERTRQNGADVSRVVGRRERVLELGCGHGLPGIVALRQGLHVCFSDFN
SEVIKEVTAPNVRLNVSDRFWGLAEYYSGDWSSLSPLLDGKEGGGRFDLI
LTAETLYTTAVADKILGMILRHLARDGQALVASKRFYFGTGGSTQYFRNQ
VALDGQLACADVSVLNNGKGNIREVLRVSWVEDRVPPEAAR*
back to top

mRNA from alignment at H-elongata_contig14132:786..3882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14132.2863.1 ID=mRNA_H-elongata_contig14132.2863.1|Name=mRNA_H-elongata_contig14132.2863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3097bp|location=Sequence derived from alignment at H-elongata_contig14132:786..3882+ (Himanthalia elongata Himel1 dioecious)
GATGCAAAGATGGCGGCGGGATTAGAAGCGCAGGTTGCATGGCGAAGCGG AGGCACTACTCTTGTTCGTGCGGTTCCCAGTGCCCACGGTGAGCCACCTG CAATCGCCGAAGGCGTTATCATCGTCGCCGAAACAAGAGTTGGTGGCGGG TATGCGACACGGGTATTCGTTTGTCGCAACAGGATGTGCCACATGCGATG CATGTAACATGTATACAACGAGAGCTTCATCATTCGCTGGCCATTCACTC TATCTCGCGATCGCATGACTCTACTGACTCTGATATTTTGCACCTCTTCC AGCGTGTCCCACGGTTCCAGAGGAGAGCGATCTCGTTCACGGCGTTTACG AGGGAGGGCTCAAGGTTTGGGAGGCCAGTCTAGACCTCGTCGACTATCTC GTCAGCTCGGGCATGGGGAATACAGAGCACCTCGGAAAAGATCAAGACAA GGACGTGACGACCCCGAAGATAGAAGAAGTCGAATCGCTTCGCTCCAGTG GCCACGGACGCGCACACGACAGTCCGAATTTTGAACGGACCCGGCAGAAT GGGGCAGATGTATCTCGTGTCGTGGGACGCCGAGAACGGGTGCTCGAGGT GCGAATCAATATCAAGGATCGTTCGAACAGCTATATCTTGTGCTTCCGTT GAGACGGGGAAAAAAAGGCGTCAACTCGATTTTTATTTGTTGGAATCTTG AGCATCATTGCAAGATTGGAAAAGAGCGGGACATGCTTGGTGTTAGTTAT TGAGGGAAAGACCTATAGAATGACGTGCTTCGGAAAACTTCGCAGGTGGG TTCTTCGATAGTTGCCTTTTGCGATGAATGCGCCGTTGTAGGATGATGCT TATCACGGTGAGATGGCGATATAACCGAGCAAATAACCCCGCGTTCGTAC CCTTGGGTGATTGGAGAGTGAAACTCAACTCGCCCTCGGCAGGATGTTAT CGAGGGCGAGCCAACCCATATTCCGGAGCTGACACTATAGCTGTCTTTAC CTCAGCTCCGCCTCCACCGTGGCTGTTGACGTTTGTTTCGTTTACGCATC ACAGCTGGGCTGTGGTCATGGCTTGCCCGGCATTGTGGCTCTCCGTCAAG GTACGGTCCAAGCACACGCACATATGCAGTTGGAACTTTCTATCGTAAGA GTGCTTTGCTCGGTTCACGCAACAAAGCGCGCCTACGCTCACAGTGCCTA TTATTGTGCGCAAGCAAGCCGCAGAGTAGCCTCAGAAGAGAAGGGCACCG TAGACTTTTGGTGCTGCGCTTGATTAACCAACACCGTATCAGTGATCAGC CATTGTGTTGACGCCAACACTCGAGAACGTTTTGCGTGATCAACGTCGAG GGCGAACGCAAAATCTATAGGATGACTCCGCAAGTTTGTGCGTGTAGTCC TCGTGGGTTCGTGTGAGAGATGGGTATATCTGGTGCCCTCTAGGCATAAG AACCGCTCGAAAGACCACAGCGAGAGGGGGGGCTCTCCTGTGGTTTTTAT TTGGTTCTTGATCTCAAGTGATTTTCGTGCTGCTGGTTTGCCCGCCGGCC GACATCTACCTTTACGTCCTCGCAAGGTCTCCACGTGTGCTTTTCGGATT TTAACAGCGAGGTGATCAAAGAAGTAACGGCACCCAACGTGCGGCTTAAT GTGTCAGACCGTTTTTGGGGCCTGGCGGAGTATTACAGCGGAGATTGGAG CTCCTTGTCTCCTTTGCTCGACGGGGTGAGTCCGCGAAATCTACTGGAAT ATATACCAAGCGATTAGGCGATCTCGTTTCTTGCGCTCGCCTCGGGTGGT CATTATCCTTTGCGTTGTTACCCCCCTGCCGTTCTCCCTTCACGCGACTC TGTCTCCCTTACGGCCCCTTTGCGGTGTTAATAAAATGACGTCGCCGGCG TCCTCAGCGAATTTCTTCTTTGGTTAATCTTGTCTGGCTCCTCTGTGGCA GAAAGAGGGAGGCGGCCGATTCGATCTCATTCTCACGGCAGAAACGCTGT ATACGACCGCGGTTGCTGACAAGGTGAAGGAACCAAAAAATGAATCGATG GTCGCAGGGCGGAGGCGCGTGTCGTTGTGCAGAAAAGGCGATTCTTGGTT ACAACTCCTTCTGCGTAGACAACACCCAGGGGTGGAAACTCTCAGGGGTT ACATACCTTTCGCGGTACGGGACCTGTACGGTGGTGCGAGTCGAGGCACT TGTCAATACGTCATACAGTGGATGAATGTAGCGGTGGCGGGGACGGTAAG GATCTCGAGCAAAGCTGAAGAACGCGTGTATTTGTTATCTGTCTTGCGCC GTGAAGTTTTTAAAAAGACCGCAACCCGGAGTCACGTGCAGTCAACTCAT AAAGTCGGTTGATGTCGGCAAACGTTTTGAACCACTGCCAAAATTGTGCT GACATTTTCGTGTCACTTCGCAGCGAGTGATGGCGTCACGATCGTAAAGA ACATTCGTTCCCTCTATTCAGAGCACCTCTTGACCACGCTTGAAACGATC ACAAACTGCGCGCGTTGCTCCGGTGCGCTGACCCCTTCCGCCGCGCCAAC CGCAGATCCTCGGGATGATCCTGCGACACTTAGCTCGCGACGGGCAGGCC TTGGTAGCGTCTAAGCGGTTCTACTTCGGTACCGGTGGTAGCACGCAGTA CTTCCGTAATCAGGTGGCGTTAGACGGGCAGCTGGCGTGCGCCGACGTGT CGGTACTGAACAATGGAAAGGGCAATATAAGGGAGGTGCTCCGGGTGTCG TGGGTAGAGGATAGGGTACCGCCAGAGGCTGCTCGATAGCACAGGCGTGA TTGAAGAAGTGGCCCTCGTTGACCCACCTCTAGGTTATGGAGGATGTCGA AATGAACATCATTTGTCTGCTTGCTGTCTGTGGGGAGGGTTTGTGTTTGC ATTTCTCGTGTGTCTGCCAACAACATATTGCCTCTATACACCTCAAGAAG CAAGAGGAGCGCAACGGCGGGCAGGCACGACTCATCAACTCCTTGCGTTT CTCGCTCTCCCCTCCGCCCGTGTCCGTAAACCATTGCTTCGTACTTATTT TGGGGATCCCAAATGGATGCCTATACCGAAGCAAGCAGCACAGTGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14132:786..3882+

>mRNA_H-elongata_contig14132.2863.1 ID=mRNA_H-elongata_contig14132.2863.1|Name=mRNA_H-elongata_contig14132.2863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig14132:786..3882+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCGGGATTAGAAGCGCAGGTTGCATGGCGAAGCGGAGGCACTAC
TCTTGTTCGTGCGGTTCCCAGTGCCCACGATGGCGGCGGGATTAGAAGCG
CAGGTTGCATGGCGAAGCGGAGGCACTACTCTTGTTCGTGCGGTTCCCAG
TGCCCACGCGTGTCCCACGGTTCCAGAGGAGAGCGATCTCGTTCACGGCG
TTTACGAGGGAGGGCTCAAGGTTTGGGAGGCCAGTCTAGACCTCGTCGAC
TATCTCGTCAGCTCGGGCATGGGGAATACAGAGCACCTCGGAAAAGATCA
AGACAAGGACGTGACGACCCCGAAGATAGAAGAAGTCGAATCGCTTCGCT
CCAGTGGCCACGGACGCGCACACGACAGTCCGAATTTTGAACGGACCCGG
CAGAATGGGGCAGATGTATCTCGTGTCGTGGGACGCCGAGAACGGGTGCT
CGAGCGTGTCCCACGGTTCCAGAGGAGAGCGATCTCGTTCACGGCGTTTA
CGAGGGAGGGCTCAAGGTTTGGGAGGCCAGTCTAGACCTCGTCGACTATC
TCGTCAGCTCGGGCATGGGGAATACAGAGCACCTCGGAAAAGATCAAGAC
AAGGACGTGACGACCCCGAAGATAGAAGAAGTCGAATCGCTTCGCTCCAG
TGGCCACGGACGCGCACACGACAGTCCGAATTTTGAACGGACCCGGCAGA
ATGGGGCAGATGTATCTCGTGTCGTGGGACGCCGAGAACGGGTGCTCGAG
CTGGGCTGTGGTCATGGCTTGCCCGGCATTGTGGCTCTCCGTCAAGCTGG
GCTGTGGTCATGGCTTGCCCGGCATTGTGGCTCTCCGTCAAGGTCTCCAC
GTGTGCTTTTCGGATTTTAACAGCGAGGTGATCAAAGAAGTAACGGCACC
CAACGTGCGGCTTAATGTGTCAGACCGTTTTTGGGGCCTGGCGGAGTATT
ACAGCGGAGATTGGAGCTCCTTGTCTCCTTTGCTCGACGGGGTCTCCACG
TGTGCTTTTCGGATTTTAACAGCGAGGTGATCAAAGAAGTAACGGCACCC
AACGTGCGGCTTAATGTGTCAGACCGTTTTTGGGGCCTGGCGGAGTATTA
CAGCGGAGATTGGAGCTCCTTGTCTCCTTTGCTCGACGGGAAAGAGGGAG
GCGGCCGATTCGATCTCATTCTCACGGCAGAAACGCTGTATACGACCGCG
GTTGCTGACAAGAAAGAGGGAGGCGGCCGATTCGATCTCATTCTCACGGC
AGAAACGCTGTATACGACCGCGGTTGCTGACAAGATCCTCGGGATGATCC
TGCGACACTTAGCTCGCGACGGGCAGGCCTTGGTAGCGTCTAAGCGGTTC
TACTTCGGTACCGGTGGTAGCACGCAGTACTTCCGTAATCAGGTGGCGTT
AGACGGGCAGCTGGCGTGCGCCGACGTGTCGGTACTGAACAATGGAAAGG
GCAATATAAGGGAGGTGCTCCGGGTGTCGTGGGTAGAGGATAGGGTACCG
CCAGAGGCTGCTCGATAGATCCTCGGGATGATCCTGCGACACTTAGCTCG
CGACGGGCAGGCCTTGGTAGCGTCTAAGCGGTTCTACTTCGGTACCGGTG
GTAGCACGCAGTACTTCCGTAATCAGGTGGCGTTAGACGGGCAGCTGGCG
TGCGCCGACGTGTCGGTACTGAACAATGGAAAGGGCAATATAAGGGAGGT
GCTCCGGGTGTCGTGGGTAGAGGATAGGGTACCGCCAGAGGCTGCTCGAT
AG
back to top