mRNA_H-elongata_contig14132.2864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14132.2864.1
Unique NamemRNA_H-elongata_contig14132.2864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14132.2864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14132contigH-elongata_contig14132:6917..7615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size699
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.097874-CDS-H-elongata_contig14132:6916..76151622929840.097874-CDS-H-elongata_contig14132:6916..7615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 6917..7615 +
1691679178.7988248-CDS-H-elongata_contig14132:6916..76151691679178.7988248-CDS-H-elongata_contig14132:6916..7615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14132 6917..7615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14132.2864.1prot_H-elongata_contig14132.2864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14132 6917..7615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14132.2864.1

>prot_H-elongata_contig14132.2864.1 ID=prot_H-elongata_contig14132.2864.1|Name=mRNA_H-elongata_contig14132.2864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
PPTFGTPCAISSAPRLRRAPCRYLTMPPTARSTKNKPSAPSATGPGSSQP
APPGAQAHALVDSAATSPVGHALFRPTSGSGTPRAQGDSPLLPTRSPLQQ
EPPATLPPSLQQRWREGTAADRILISSLNLDSLRRELSDLEASADFHAVE
LETAENEARHATLVITGREADDVVRAAIKLDKETKVRSAANIASLQRTAR
LHNDAITASSAGHARAVISLTTTRTPHSKAPRN
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mRNA from alignment at H-elongata_contig14132:6917..7615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14132.2864.1 ID=mRNA_H-elongata_contig14132.2864.1|Name=mRNA_H-elongata_contig14132.2864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig14132:6917..7615+ (Himanthalia elongata Himel1 dioecious)
CCACCAACGTTCGGCACCCCTTGCGCGATTTCTTCCGCCCCCCGCCTTCG
CCGAGCACCCTGCAGGTATTTAACCATGCCACCCACGGCGCGTTCGACTA
AGAACAAGCCTTCGGCCCCCTCCGCGACGGGACCCGGTTCCTCGCAGCCC
GCTCCCCCAGGAGCCCAAGCGCACGCACTGGTGGACTCAGCGGCCACTTC
GCCCGTGGGCCACGCCCTCTTCCGGCCAACCTCTGGGAGTGGAACGCCCC
GCGCTCAGGGCGACTCCCCTCTCCTGCCGACCCGGAGCCCCCTACAACAG
GAGCCTCCTGCCACGCTTCCGCCGTCCCTCCAACAACGCTGGCGGGAGGG
GACCGCAGCAGATAGGATACTCATCTCCAGCCTCAACCTCGACTCCTTAC
GCCGGGAACTCTCCGACCTGGAAGCGTCAGCCGACTTCCATGCGGTGGAA
CTTGAGACCGCGGAGAATGAGGCCCGCCACGCCACCCTCGTCATCACGGG
GCGGGAAGCGGACGATGTCGTCCGTGCGGCGATAAAGTTGGACAAGGAAA
CCAAGGTAAGGTCGGCAGCCAACATCGCGAGCCTTCAACGCACGGCCCGC
CTCCACAACGACGCCATCACGGCGTCCTCTGCCGGCCACGCCCGCGCCGT
TATCTCCCTTACGACAACGAGGACCCCTCACTCCAAAGCACCGCGGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig14132:6917..7615+

>mRNA_H-elongata_contig14132.2864.1 ID=mRNA_H-elongata_contig14132.2864.1|Name=mRNA_H-elongata_contig14132.2864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig14132:6917..7615+ (Himanthalia elongata Himel1 dioecious)
CCACCAACGTTCGGCACCCCTTGCGCGATTTCTTCCGCCCCCCGCCTTCG
CCGAGCACCCTGCAGGTATTTAACCATGCCACCCACGGCGCGTTCGACTA
AGAACAAGCCTTCGGCCCCCTCCGCGACGGGACCCGGTTCCTCGCAGCCC
GCTCCCCCAGGAGCCCAAGCGCACGCACTGGTGGACTCAGCGGCCACTTC
GCCCGTGGGCCACGCCCTCTTCCGGCCAACCTCTGGGAGTGGAACGCCCC
GCGCTCAGGGCGACTCCCCTCTCCTGCCGACCCGGAGCCCCCTACAACAG
GAGCCTCCTGCCACGCTTCCGCCGTCCCTCCAACAACGCTGGCGGGAGGG
GACCGCAGCAGATAGGATACTCATCTCCAGCCTCAACCTCGACTCCTTAC
GCCGGGAACTCTCCGACCTGGAAGCGTCAGCCGACTTCCATGCGGTGGAA
CTTGAGACCGCGGAGAATGAGGCCCGCCACGCCACCCTCGTCATCACGGG
GCGGGAAGCGGACGATGTCGTCCGTGCGGCGATAAAGTTGGACAAGGAAA
CCAAGGTAAGGTCGGCAGCCAACATCGCGAGCCTTCAACGCACGGCCCGC
CTCCACAACGACGCCATCACGGCGTCCTCTGCCGGCCACGCCCGCGCCGT
TATCTCCCTTACGACAACGAGGACCCCTCACTCCAAAGCACCGCGGAACC
CACCAACGTTCGGCACCCCTTGCGCGATTTCTTCCGCCCCCCGCCTTCGC
CGAGCACCCTGCAGGTATTTAACCATGCCACCCACGGCGCGTTCGACTAA
GAACAAGCCTTCGGCCCCCTCCGCGACGGGACCCGGTTCCTCGCAGCCCG
CTCCCCCAGGAGCCCAAGCGCACGCACTGGTGGACTCAGCGGCCACTTCG
CCCGTGGGCCACGCCCTCTTCCGGCCAACCTCTGGGAGTGGAACGCCCCG
CGCTCAGGGCGACTCCCCTCTCCTGCCGACCCGGAGCCCCCTACAACAGG
AGCCTCCTGCCACGCTTCCGCCGTCCCTCCAACAACGCTGGCGGGAGGGG
ACCGCAGCAGATAGGATACTCATCTCCAGCCTCAACCTCGACTCCTTACG
CCGGGAACTCTCCGACCTGGAAGCGTCAGCCGACTTCCATGCGGTGGAAC
TTGAGACCGCGGAGAATGAGGCCCGCCACGCCACCCTCGTCATCACGGGG
CGGGAAGCGGACGATGTCGTCCGTGCGGCGATAAAGTTGGACAAGGAAAC
CAAGGTAAGGTCGGCAGCCAACATCGCGAGCCTTCAACGCACGGCCCGCC
TCCACAACGACGCCATCACGGCGTCCTCTGCCGGCCACGCCCGCGCCGTT
ATCTCCCTTACGACAACGAGGACCCCTCACTCCAAAGCACCGCGGAAC
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