mRNA_H-elongata_contig14126.2859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14126.2859.1
Unique NamemRNA_H-elongata_contig14126.2859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14126.2859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14126contigH-elongata_contig14126:5528..6302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size415
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14126.2859.1prot_H-elongata_contig14126.2859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14126 5571..5970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.8520284-UTR-H-elongata_contig14126:5527..55701622929839.8520284-UTR-H-elongata_contig14126:5527..5570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14126 5528..5570 -
1691679178.708328-UTR-H-elongata_contig14126:5527..55701691679178.708328-UTR-H-elongata_contig14126:5527..5570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14126 5528..5570 -
1622929839.8933692-UTR-H-elongata_contig14126:5970..59891622929839.8933692-UTR-H-elongata_contig14126:5970..5989Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14126 5971..5989 -
1691679178.736483-UTR-H-elongata_contig14126:5970..59891691679178.736483-UTR-H-elongata_contig14126:5970..5989Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14126 5971..5989 -
1622929839.907387-UTR-H-elongata_contig14126:6162..63021622929839.907387-UTR-H-elongata_contig14126:6162..6302Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14126 6163..6302 -
1691679178.749735-UTR-H-elongata_contig14126:6162..63021691679178.749735-UTR-H-elongata_contig14126:6162..6302Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14126 6163..6302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.8665817-CDS-H-elongata_contig14126:5570..56961622929839.8665817-CDS-H-elongata_contig14126:5570..5696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14126 5571..5696 -
1691679178.7169127-CDS-H-elongata_contig14126:5570..56961691679178.7169127-CDS-H-elongata_contig14126:5570..5696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14126 5571..5696 -
1622929839.879791-CDS-H-elongata_contig14126:5883..59701622929839.879791-CDS-H-elongata_contig14126:5883..5970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14126 5884..5970 -
1691679178.727672-CDS-H-elongata_contig14126:5883..59701691679178.727672-CDS-H-elongata_contig14126:5883..5970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14126 5884..5970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14126.2859.1

>prot_H-elongata_contig14126.2859.1 ID=prot_H-elongata_contig14126.2859.1|Name=mRNA_H-elongata_contig14126.2859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MEMLERRRQEEKAWRITGALRNLLSDGVELSQSPPMRGVTQGYNGDVSLS
LKQELFSSLDYIAATVSSTR*
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mRNA from alignment at H-elongata_contig14126:5528..6302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14126.2859.1 ID=mRNA_H-elongata_contig14126.2859.1|Name=mRNA_H-elongata_contig14126.2859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=775bp|location=Sequence derived from alignment at H-elongata_contig14126:5528..6302- (Himanthalia elongata Himel1 dioecious)
AAGCACGATGTCCGTGGCGGTACTTACCCGCGCGAGAGAGAAGACGCGAT
TCAGTGCTTGGAAACGCACCGTGATGCATGCGAAAGACGATGGGAGGAAG
TAGAGGAGACTTTCTCTCGCCTGGTGACGCACAACAAAAGGTGGGGTTAC
GCGCTATACCTCGAGTCTCCAAGACCTTATCTTTCCCCACCCCTCGATCT
CCCGCAACCCTGAACGCCCTTGGCTTTTATTTTCTTTATCGAAGCGATGC
GCGACAAACAACATACCTTATACCTTCGATTTTCATGTGCGCTCTTGCCT
CGACCCCGCAAAGTCTGGCGCAAAAGCTTCGGATGGAAATGCTAGAGCGG
CGGCGGCAAGAAGAAAAAGCGTGGCGTATTACCGGCGCGCTTCGTAACCT
CTTGTCCGACGGCGTTGAAGCCGAGCCCGCGGCCTCTGTCGGCGATGACG
GTGTTGTTCCAGGCGATGACGGGGTTGTTTCGTCCTCGATAACATGGCCG
AGCGATTTTAAAAGCCCAGATCCTTGGAGTGACCTTGTCTCGAACAAGGA
AGCCGTCTCTAGGAAACACGTCCCGGATACGAGAGAACGGGATTATGACC
ATCGAGTTGAGCCAATCCCCTCCGATGCGAGGGGTGACACAGGGCTACAA
CGGTGATGTCAGCCTAAGTCTTAAACAAGAGTTATTTTCGTCTTTAGATT
ATATTGCGGCGACCGTGTCATCAACGCGATAGCATCGGACGAGGATGTCA
CAGCAGAGAGTCATGAGTGGTGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig14126:5528..6302-

>mRNA_H-elongata_contig14126.2859.1 ID=mRNA_H-elongata_contig14126.2859.1|Name=mRNA_H-elongata_contig14126.2859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig14126:5528..6302- (Himanthalia elongata Himel1 dioecious)
ATGGAAATGCTAGAGCGGCGGCGGCAAGAAGAAAAAGCGTGGCGTATTAC
CGGCGCGCTTCGTAACCTCTTGTCCGACGGCGTTGAAATGGAAATGCTAG
AGCGGCGGCGGCAAGAAGAAAAAGCGTGGCGTATTACCGGCGCGCTTCGT
AACCTCTTGTCCGACGGCGTTGAATTGAGCCAATCCCCTCCGATGCGAGG
GGTGACACAGGGCTACAACGGTGATGTCAGCCTAAGTCTTAAACAAGAGT
TATTTTCGTCTTTAGATTATATTGCGGCGACCGTGTCATCAACGCGATAG
TTGAGCCAATCCCCTCCGATGCGAGGGGTGACACAGGGCTACAACGGTGA
TGTCAGCCTAAGTCTTAAACAAGAGTTATTTTCGTCTTTAGATTATATTG
CGGCGACCGTGTCATCAACGCGATAG
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