prot_H-elongata_contig14125.2858.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14125.2858.1
Unique Nameprot_H-elongata_contig14125.2858.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length796
Homology
BLAST of mRNA_H-elongata_contig14125.2858.1 vs. uniprot
Match: A0A6H5KMQ0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.200e-39
Identity = 258/725 (35.59%), Postives = 316/725 (43.59%), Query Frame = 0
Query:    1 MTEQLVTLEENVRGAKALLEASRKREAAAVWELSRSKAVEARRVGQVQALLAS------ARC-GNEDCDTRAVD---------------SGDCAPGAGSV-----GCSANCALSE-------------------------------LAALEEAITERVRESAALKIVNATLTKEVNMAAECHEQEAVIALNLLKQERQRVAEETSARMLLEDELFDRRRELAETRAERDEARTNLGVVAAACREAEAKSRELQEHRRVLAREVRALRAEQRRLSDALSCATTAXXXXXXXXXXXXXXASSGN--------------RDRLSSTMSWAASDTARESDTRGS-------------------------------GMVCKDNGVSELVQEDFIPGVQDRPDDS-DLTADEESGSGKADAPDRYQASAHAERETHETTSGI-LGDAVVQRWVRPSSLDAPSWPSR----GVEEPTSAESCATSPEVGS---PSLWVRSEKSNRHHVSPWLPSPPSRNN----------PTDTDVVVSVAQES---SWQKTPENGLAGTAL--------------TSDADIEDNGQQMG---------------LPAECDAGESALTQPTDLGINNSSQDRSDLTVTRVWPLSSS--ALPGES---RFNQVVHSLSVGLREGRKARRTPLLGSLDDDSDAGDPDA---------------DDGGVTDGTD---GDSRHEAT 548
            +++QLVT EE +  + ALL ASR RE+AAV ELSR  A E RRV QV+ALLA+      A C G +  D    D               S  C  G+ S      GC+++ +L E                               LAALEE I ER +E A+LK+ N  L ++  +A +   ++   AL L  QER+R   E S R  LE EL   R ELA+ RA R+EAR NLGVVAAACREAEAKSRELQEHRRVLAREV+A RAEQRRLS ALS ATTAXXXXXXXXXXXXXX                   RDR SS    AA D   E   RG                                G + ++ G ++      +    + PD S  + +  + GSG+  APD  +A       T ET S I +       WVRPSSLD     SR      E    +ES ATSPE GS   P      E      VS                     PT  D   S  ++    +  K+P    AG  +               +D  ++D G + G               LP     G+  L    + G                   + +  A  GES   R NQ+V SLS GLRE RKARR PLLG LDDD ++   D                DDGGVTDGT    GDSRH+ T
Sbjct:  171 LSDQLVTHEEAIHESLALLRASRGRESAAVSELSRRDAEEERRVEQVRALLAASTSSPPAHCDGGDMTDNILADPPGWARSGRERPRSCSSSCTGGSDSESSRVRGCTSSSSLPERARSEASAVARGMGTGVGGRGSSVAATSLSGLAALEEVIAERAQEVASLKMANEALREKEALADDRRRRDVAEALRLRDQERERAEGEASLRSDLEAELQRLREELADCRAGREEARVNLGVVAAACREAEAKSRELQEHRRVLAREVKASRAEQRRLSAALSFATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRSSS----AAEDLREEFAGRGEVEEGTGCVGGEIGHDFERPPGGNALTLPSPEGQLGEEQGAAQAA----VEMAAETPDGSGSVQSGGDGGSGRV-APDSPEA-------TEETLSDIAMAQTAPVVWVRPSSLDIAGVNSRRQGQSQESTGGSESGATSPEEGSLVFPGATDACEGVGDGGVSXXXXXXXXXXXXXXXXXXXGPPTVGDEGPSRRRDEGRFAASKSPSPPAAGGGVGFGEEGDEELEEETCADGGVKDAGGKKGEQGEEGARDRSSPSPLPPSTCGGKHPLGTGVETGGXXXXXXXXXXXXXXXXXXAEALAAAFGESSSLRLNQMVASLSAGLRETRKARRKPLLGQLDDDDESDGCDGGGLNAGPSPISPDEDDDGGVTDGTGTDGGDSRHDPT 879          
BLAST of mRNA_H-elongata_contig14125.2858.1 vs. uniprot
Match: D8LCD8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.990e-15
Identity = 104/280 (37.14%), Postives = 125/280 (44.64%), Query Frame = 0
Query:    1 MTEQLVTLEENVRGAKALLEASRKREAAAVWELSRSKAVEARRVGQVQALLAS------------------------ARCGNE----DCDTRAVDSGDC-----------------------------APGAGSVGCS-ANCALSELAALEEAITERVRESAALKIVNATLTKEVNMAAECHEQEAVIALNLLKQERQRVAEETSARMLLEDELFDRRRELAETRAERDEARTNLGVVAAACREAEAKSRELQEHRRVLAREVRALRAEQRRLSDALSCA 222
            +++QLVT EE +  + ALL ASR RE+AAV ELSR  A EARRVGQV+ALLA+                        AR G E       +   D GD                                G G  G S A  +LSELAALEE I ER +E A+LK+ N  L ++  +A +   ++   AL L  QER+R   E S R  LE EL                                     LQEHRRVLAREV+A R EQRRLS ALSCA
Sbjct:  171 LSDQLVTHEEAIHESLALLRASRGRESAAVSELSRRDAEEARRVGQVRALLAASTSSPPASCDGGDIADNLADPPGWARSGRERPRSSSSSSCTDGGDSESSCLRGCVSWSSLQERARAEASAVVGGMGTGVGGRGSSVAATSLSELAALEEVIAERAQEVASLKVDNEALREKEALADDRRRRDVAEALRLRDQERERAEGEASLRSDLEAELQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQEHRRVLAREVKASRVEQRRLSAALSCA 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14125.2858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMQ0_9PHAE4.200e-3935.59PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCD8_ECTSI7.990e-1537.14N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..155
NoneNo IPR availableCOILSCoilCoilcoord: 184..211
NoneNo IPR availableCOILSCoilCoilcoord: 5..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14125contigH-elongata_contig14125:2320..6070 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14125.2858.1mRNA_H-elongata_contig14125.2858.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14125 2152..6596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14125.2858.1 ID=prot_H-elongata_contig14125.2858.1|Name=mRNA_H-elongata_contig14125.2858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=796bp
MTEQLVTLEENVRGAKALLEASRKREAAAVWELSRSKAVEARRVGQVQAL
LASARCGNEDCDTRAVDSGDCAPGAGSVGCSANCALSELAALEEAITERV
RESAALKIVNATLTKEVNMAAECHEQEAVIALNLLKQERQRVAEETSARM
LLEDELFDRRRELAETRAERDEARTNLGVVAAACREAEAKSRELQEHRRV
LAREVRALRAEQRRLSDALSCATTAASAAAATAAATATAASSGNRDRLSS
TMSWAASDTARESDTRGSGMVCKDNGVSELVQEDFIPGVQDRPDDSDLTA
DEESGSGKADAPDRYQASAHAERETHETTSGILGDAVVQRWVRPSSLDAP
SWPSRGVEEPTSAESCATSPEVGSPSLWVRSEKSNRHHVSPWLPSPPSRN
NPTDTDVVVSVAQESSWQKTPENGLAGTALTSDADIEDNGQQMGLPAECD
AGESALTQPTDLGINNSSQDRSDLTVTRVWPLSSSALPGESRFNQVVHSL
SVGLREGRKARRTPLLGSLDDDSDAGDPDADDGGVTDGTDGDSRHEATRV
DDRESAWIGRHTVGRRGSVLMANDGGSLRVAEELRVGDARISHIDADRCD
EDVVPLDGGDEEGRQRVRQKGSCSDAEKANRDTKQPRPTDAGDRFAGASV
NSATVDSVTMMAVTTISTLEVEQPGSGVEPSCSQASAGSSGWRSSLEAVA
DVAVEAASKATESSADWFRKVSLHSAEERPPWQEGAGQTSSQLHDGFGRG
VIEAVPEESGTLATAAAAAAAARRWEAKLKGSFVSMTSGVRWGMG*
back to top