mRNA_H-elongata_contig141242.2857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141242.2857.1
Unique NamemRNA_H-elongata_contig141242.2857.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141242.2857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141242contigH-elongata_contig141242:81..706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size613
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141242.2857.1prot_H-elongata_contig141242.2857.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141242 317..692 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.6782906-UTR-H-elongata_contig141242:80..3161622929839.6782906-UTR-H-elongata_contig141242:80..316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141242 81..316 -
1691679178.6240554-UTR-H-elongata_contig141242:80..3161691679178.6240554-UTR-H-elongata_contig141242:80..316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141242 81..316 -
1622929839.7130637-UTR-H-elongata_contig141242:692..7061622929839.7130637-UTR-H-elongata_contig141242:692..706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141242 693..706 -
1691679178.6464462-UTR-H-elongata_contig141242:692..7061691679178.6464462-UTR-H-elongata_contig141242:692..706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141242 693..706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.6882675-CDS-H-elongata_contig141242:316..3831622929839.6882675-CDS-H-elongata_contig141242:316..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141242 317..383 -
1691679178.6314826-CDS-H-elongata_contig141242:316..3831691679178.6314826-CDS-H-elongata_contig141242:316..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141242 317..383 -
1622929839.6986558-CDS-H-elongata_contig141242:396..6921622929839.6986558-CDS-H-elongata_contig141242:396..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141242 397..692 -
1691679178.639127-CDS-H-elongata_contig141242:396..6921691679178.639127-CDS-H-elongata_contig141242:396..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141242 397..692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141242.2857.1

>prot_H-elongata_contig141242.2857.1 ID=prot_H-elongata_contig141242.2857.1|Name=mRNA_H-elongata_contig141242.2857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MATPRLGGEGGPWRRQGGDGLLVVSGGRRDGVVSEACCVLEGRYVGRRPC
RGFFSKLDRRTDGIIRLPPLGGQGSLAGLVFFRLEFHGPTVSGCLQVGEE
PRLRLDRKVLSAAVPSRQRC*
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mRNA from alignment at H-elongata_contig141242:81..706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141242.2857.1 ID=mRNA_H-elongata_contig141242.2857.1|Name=mRNA_H-elongata_contig141242.2857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=626bp|location=Sequence derived from alignment at H-elongata_contig141242:81..706- (Himanthalia elongata Himel1 dioecious)
GTGGCTCGTGAGCGATGGCCACTCCACGACTTGGTGGAGAGGGAGGTCCT
TGGCGCCGTCAGGGAGGTGATGGCTTGCTCGTGGTCAGCGGTGGACGCCG
CGATGGCGTAGTTTCTGAGGCGTGCTGTGTGTTAGAGGGACGCTATGTGG
GCCGCCGACCTTGCCGCGGTTTCTTTAGCAAGCTGGATCGCCGCACGGAC
GGCATCATCCGCCTTCCGCCCCTTGGTGGCCAGGGTAGCTTGGCGGGCCT
CGTATTCTTCCGTCTCGAGTTCCACGGCCCGACGGTCAGCGGATGCCTCC
AGGTCGGAGAGTTCTTGGCGGAGGGAGCCGAGGTTGAGGCTTGATAGGAA
AGTCCTGTCGGCGGCGGTCCCCTCCCGCCAGCGTTGTTGAAGGGACGGCT
GGAGCAAAGCAGGAGGCTCCTGCTGCAGGAGGCTCTGGACCGGGAAGGTA
GGACAGCCGCCCTGGAGGCGTGTCGCGCAACCCCTGGAGGCTGCCCGAAG
GAGGGCTGATCACACAGGAGAGGTAGCCGCCGAGTCGACCGCCGGTGGAG
CTGTAGATATCCCGGGCTGGGAGGGTCCGGCTCCAGTCAAGGCTGGGACC
GAGGGCTTGGCGCTCTTGGCGGAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig141242:81..706-

>mRNA_H-elongata_contig141242.2857.1 ID=mRNA_H-elongata_contig141242.2857.1|Name=mRNA_H-elongata_contig141242.2857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig141242:81..706- (Himanthalia elongata Himel1 dioecious)
ATGGCCACTCCACGACTTGGTGGAGAGGGAGGTCCTTGGCGCCGTCAGGG
AGGTGATGGCTTGCTCGTGGTCAGCGGTGGACGCCGCGATGGCGTAGTTT
CTGAGGCGTGCTGTGTGTTAGAGGGACGCTATGTGGGCCGCCGACCTTGC
CGCGGTTTCTTTAGCAAGCTGGATCGCCGCACGGACGGCATCATCCGCCT
TCCGCCCCTTGGTGGCCAGGGTAGCTTGGCGGGCCTCGTATTCTTCCGTC
TCGAGTTCCACGGCCCGACGGTCAGCGGATGCCTCCAGGTCGGAGAATGG
CCACTCCACGACTTGGTGGAGAGGGAGGTCCTTGGCGCCGTCAGGGAGGT
GATGGCTTGCTCGTGGTCAGCGGTGGACGCCGCGATGGCGTAGTTTCTGA
GGCGTGCTGTGTGTTAGAGGGACGCTATGTGGGCCGCCGACCTTGCCGCG
GTTTCTTTAGCAAGCTGGATCGCCGCACGGACGGCATCATCCGCCTTCCG
CCCCTTGGTGGCCAGGGTAGCTTGGCGGGCCTCGTATTCTTCCGTCTCGA
GTTCCACGGCCCGACGGTCAGCGGATGCCTCCAGGTCGGAGAGGAGCCGA
GGTTGAGGCTTGATAGGAAAGTCCTGTCGGCGGCGGTCCCCTCCCGCCAG
CGTTGTTGAGGAGCCGAGGTTGAGGCTTGATAGGAAAGTCCTGTCGGCGG
CGGTCCCCTCCCGCCAGCGTTGTTGA
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